Wall clock time and date at job start Sat Mar 6 2021 20:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09003 * 109.46733 * 217.06312 * 3 2 1 5 5 C 1.52994 * 109.46970 * 337.05970 * 3 2 1 6 6 C 1.53003 * 109.46859 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46988 * 299.99946 * 6 5 3 8 8 H 1.08995 * 109.47133 * 299.99958 * 7 6 5 9 9 N 1.46508 * 109.46854 * 179.97438 * 7 6 5 10 10 C 1.34778 * 119.99366 * 155.00212 * 9 7 6 11 11 O 1.21284 * 120.00274 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99463 * 180.02562 * 10 9 7 13 13 O 1.42905 * 109.47121 * 179.97438 * 12 10 9 14 14 C 1.35985 * 116.99970 * 179.97438 * 13 12 10 15 15 C 1.38673 * 119.99652 * 180.02562 * 14 13 12 16 16 C 1.50700 * 120.00120 * 359.97438 * 15 14 13 17 17 O 1.42898 * 109.47027 * 285.02207 * 16 15 14 18 18 Si 1.86303 * 109.47039 * 165.02465 * 16 15 14 19 19 C 1.38155 * 120.00077 * 180.02562 * 15 14 13 20 20 C 1.38678 * 119.99899 * 359.97438 * 19 15 14 21 21 O 1.35984 * 120.00359 * 179.97438 * 20 19 15 22 22 C 1.42901 * 117.00091 * 180.02562 * 21 20 19 23 23 C 1.38723 * 119.99749 * 0.02702 * 20 19 15 24 24 C 1.38105 * 120.00359 * 359.94915 * 23 20 19 25 25 C 1.52997 * 109.47062 * 60.00010 * 7 6 5 26 26 C 1.52992 * 109.47183 * 300.00200 * 25 7 6 27 27 H 4.18745 * 15.03863 * 359.97438 * 4 2 1 28 28 H 1.08995 * 109.47327 * 60.00340 * 5 3 2 29 29 H 1.08996 * 109.47537 * 299.99900 * 5 3 2 30 30 H 1.09007 * 109.46826 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.47161 * 60.00667 * 6 5 3 32 32 H 0.96999 * 120.00153 * 335.00598 * 9 7 6 33 33 H 1.08994 * 109.48075 * 59.99809 * 12 10 9 34 34 H 1.09005 * 109.47126 * 299.99696 * 12 10 9 35 35 H 1.08996 * 109.47233 * 45.02404 * 16 15 14 36 36 H 0.96697 * 113.99673 * 60.00154 * 17 16 15 37 37 H 1.48498 * 110.00222 * 178.68263 * 18 16 15 38 38 H 1.48505 * 109.99880 * 299.99887 * 18 16 15 39 39 H 1.07995 * 120.00197 * 179.72201 * 19 15 14 40 40 H 1.09000 * 109.47318 * 59.99885 * 22 21 20 41 41 H 1.08996 * 109.46751 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.46870 * 300.00289 * 22 21 20 43 43 H 1.08005 * 119.99936 * 179.97438 * 23 20 19 44 44 H 1.08004 * 120.00698 * 180.02562 * 24 23 20 45 45 H 1.09006 * 109.46750 * 60.00233 * 25 7 6 46 46 H 1.09000 * 109.47061 * 179.97438 * 25 7 6 47 47 H 1.09006 * 109.47304 * 299.99693 * 26 25 7 48 48 H 1.09010 * 109.47291 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0090 0.8209 0.6194 5 6 3.1566 -1.3275 0.5622 6 6 4.6866 -1.3265 0.5628 7 6 5.1970 -1.1487 -0.8686 8 1 4.8345 -1.9689 -1.4881 9 7 6.6621 -1.1472 -0.8679 10 6 7.3368 -1.5060 -1.9781 11 8 6.7311 -1.8306 -2.9775 12 6 8.8437 -1.5050 -1.9773 13 8 9.3211 -1.9199 -3.2587 14 6 10.6693 -1.9734 -3.4276 15 6 11.2002 -2.3675 -4.6466 16 6 10.2831 -2.7370 -5.7839 17 8 9.7177 -4.0265 -5.5401 18 14 11.2510 -2.7740 -7.3753 19 6 12.5700 -2.4224 -4.8181 20 6 13.4140 -2.0829 -3.7715 21 8 14.7623 -2.1374 -3.9400 22 6 15.5714 -1.7745 -2.8194 23 6 12.8828 -1.6887 -2.5521 24 6 11.5136 -1.6334 -2.3808 25 6 4.6864 0.1794 -1.4308 26 6 3.1565 0.1785 -1.4313 27 1 -1.0500 -0.0005 -0.0010 28 1 2.7937 -2.1477 -0.0571 29 1 2.7934 -1.4540 1.5821 30 1 5.0504 -2.2730 0.9630 31 1 5.0492 -0.5064 1.1825 32 1 7.1465 -0.8880 -0.0685 33 1 9.2072 -2.1933 -1.2143 34 1 9.2063 -0.4998 -1.7622 35 1 9.4847 -1.9990 -5.8613 36 1 9.1989 -4.0810 -4.7259 37 1 10.3647 -3.1681 -8.4998 38 1 11.8441 -1.4386 -7.6402 39 1 12.9835 -2.7336 -5.7660 40 1 15.3537 -2.4393 -1.9836 41 1 16.6241 -1.8610 -3.0883 42 1 15.3535 -0.7460 -2.5319 43 1 13.5402 -1.4247 -1.7368 44 1 11.1000 -1.3261 -1.4315 45 1 5.0491 0.9997 -0.8112 46 1 5.0504 0.3063 -2.4503 47 1 2.7938 -0.6417 -2.0509 48 1 2.7926 1.1250 -1.8314 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_4974302.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:17:42 Heat of formation + Delta-G solvation = -65.054918 kcal Electronic energy + Delta-G solvation = -29812.206140 eV Core-core repulsion = 25607.838433 eV Total energy + Delta-G solvation = -4204.367708 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.84772 -41.14625 -40.07498 -39.30016 -38.10564 -36.93835 -35.92384 -33.64589 -32.81476 -31.87696 -31.28990 -30.41973 -28.81196 -27.91589 -26.59702 -24.45271 -23.81153 -23.37524 -22.40960 -21.61459 -21.13400 -19.53855 -19.07754 -18.80641 -18.53837 -18.05111 -17.50369 -17.37015 -17.23282 -16.60970 -16.20228 -16.01938 -15.75412 -15.62114 -15.48665 -15.42482 -15.21061 -15.03004 -14.52400 -14.20352 -14.13867 -14.04897 -13.91724 -13.53406 -13.43250 -13.28036 -13.04053 -12.80160 -12.51494 -12.34668 -12.29741 -12.19153 -12.03341 -11.96335 -11.65987 -11.44275 -11.31284 -11.23915 -11.04854 -10.95861 -10.90572 -10.17404 -10.09748 -8.82115 -4.94499 0.06474 0.33402 1.32692 1.43510 1.45221 1.57274 1.83606 1.87056 1.90641 2.35187 2.54251 2.57466 3.34548 3.48971 3.55028 3.62950 3.70437 3.74616 3.85112 3.94975 4.04177 4.07839 4.09465 4.12724 4.13865 4.20433 4.20868 4.27825 4.35036 4.38802 4.43681 4.45363 4.46012 4.65114 4.70536 4.71972 4.80258 4.96888 4.98504 5.02265 5.08127 5.10230 5.12437 5.19253 5.20847 5.26428 5.32611 5.41097 5.44877 6.13426 6.42113 6.47691 6.50944 6.66993 7.13258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.211 4.211 3 C 0.021 3.979 4 H 0.108 0.892 5 C -0.105 4.105 6 C -0.114 4.114 7 C 0.146 3.854 8 H 0.062 0.938 9 N -0.705 5.705 10 C 0.512 3.488 11 O -0.571 6.571 12 C 0.037 3.963 13 O -0.317 6.317 14 C 0.089 3.911 15 C -0.119 4.119 16 C -0.081 4.081 17 O -0.545 6.545 18 Si 0.811 3.189 19 C -0.119 4.119 20 C 0.090 3.910 21 O -0.333 6.333 22 C 0.017 3.983 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.122 4.122 26 C -0.105 4.105 27 H 0.237 0.763 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.422 0.578 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.061 0.939 36 H 0.372 0.628 37 H -0.295 1.295 38 H -0.264 1.264 39 H 0.152 0.848 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 2.867 10.618 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.211 4.211 3 C 0.003 3.997 4 H 0.126 0.874 5 C -0.143 4.143 6 C -0.152 4.152 7 C 0.042 3.958 8 H 0.081 0.919 9 N -0.359 5.359 10 C 0.298 3.702 11 O -0.449 6.449 12 C -0.040 4.040 13 O -0.231 6.231 14 C 0.045 3.955 15 C -0.120 4.120 16 C -0.189 4.189 17 O -0.351 6.351 18 Si 0.712 3.288 19 C -0.137 4.137 20 C 0.045 3.955 21 O -0.247 6.247 22 C -0.077 4.077 23 C -0.180 4.180 24 C -0.177 4.177 25 C -0.161 4.161 26 C -0.143 4.143 27 H 0.253 0.747 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.260 0.740 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.078 0.922 36 H 0.220 0.780 37 H -0.222 1.222 38 H -0.190 1.190 39 H 0.169 0.831 40 H 0.086 0.914 41 H 0.133 0.867 42 H 0.085 0.915 43 H 0.179 0.821 44 H 0.185 0.815 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.602 2.725 8.279 9.856 hybrid contribution -1.612 0.917 1.348 2.292 sum 2.990 3.642 9.626 10.718 Atomic orbital electron populations 1.25694 0.97018 1.00342 1.00115 1.23639 0.95316 1.01006 1.01092 1.18453 0.83539 1.00118 0.97560 0.87375 1.21479 0.95197 0.95632 1.02027 1.21756 0.94782 1.04603 0.94059 1.20990 0.78789 0.97671 0.98383 0.91931 1.45732 1.07089 1.68398 1.14649 1.20551 0.89800 0.76479 0.83334 1.90777 1.71016 1.48495 1.34626 1.22732 0.90954 1.04593 0.85754 1.86089 1.19035 1.83620 1.34339 1.18802 0.82190 1.00023 0.94531 1.19447 0.93695 1.04213 0.94672 1.25511 0.98844 0.87235 1.07284 1.86659 1.71261 1.29764 1.47433 0.92232 0.83407 0.82989 0.70137 1.20181 0.90421 1.03650 0.99433 1.18979 0.83529 0.98689 0.94277 1.86088 1.13933 1.83890 1.40832 1.23356 0.95373 1.00847 0.88144 1.21425 0.96073 1.03311 0.97156 1.21375 0.93237 1.03789 0.99330 1.21855 0.94867 0.98138 1.01241 1.21455 0.95091 1.02239 0.95535 0.74679 0.92431 0.89962 0.89661 0.88435 0.73995 0.85552 0.85959 0.92150 0.78010 1.22240 1.18954 0.83093 0.91381 0.86748 0.91544 0.82075 0.81451 0.89336 0.93422 0.92859 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.54 19.25 74.32 1.43 0.89 16 2 C -0.21 -0.70 12.56 31.13 0.39 -0.31 16 3 C 0.02 -0.03 2.56 -12.60 -0.03 -0.07 16 4 H 0.11 -0.51 8.14 -2.39 -0.02 -0.53 16 5 C -0.11 0.42 5.16 30.59 0.16 0.58 16 6 C -0.11 0.90 5.39 30.60 0.16 1.07 16 7 C 0.15 -0.40 2.45 44.99 0.11 -0.29 16 8 H 0.06 0.24 7.58 -2.39 -0.02 0.22 16 9 N -0.70 4.12 5.08 -442.52 -2.25 1.88 16 10 C 0.51 0.67 7.87 87.66 0.69 1.36 16 11 O -0.57 -7.60 16.16 16.00 0.26 -7.34 16 12 C 0.04 -0.17 5.22 71.23 0.37 0.20 16 13 O -0.32 -1.41 8.56 -74.34 -0.64 -2.04 16 14 C 0.09 0.30 6.62 22.49 0.15 0.45 16 15 C -0.12 -0.73 5.27 -19.78 -0.10 -0.83 16 16 C -0.08 -0.69 2.33 71.24 0.17 -0.53 16 17 O -0.54 -5.61 12.65 -148.98 -1.89 -7.49 16 18 Si 0.81 4.60 30.17 68.60 2.07 6.67 16 19 C -0.12 -0.53 8.59 22.36 0.19 -0.34 16 20 C 0.09 0.23 6.69 22.49 0.15 0.38 16 21 O -0.33 -0.67 10.50 -93.37 -0.98 -1.65 16 22 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 23 C -0.16 0.35 9.03 22.35 0.20 0.55 16 24 C -0.16 0.43 9.03 22.35 0.20 0.63 16 25 C -0.12 0.18 5.49 30.59 0.17 0.34 16 26 C -0.10 -0.02 5.16 30.59 0.16 0.14 16 27 H 0.24 -0.84 7.80 -4.42 -0.03 -0.88 16 28 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H 0.08 -0.76 8.14 -2.38 -0.02 -0.78 16 31 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16 32 H 0.42 -5.92 8.60 -92.71 -0.80 -6.71 16 33 H 0.13 -1.43 7.66 -2.39 -0.02 -1.45 16 34 H 0.12 -1.31 7.66 -2.38 -0.02 -1.33 16 35 H 0.06 0.67 7.82 -2.39 -0.02 0.66 16 36 H 0.37 2.91 8.59 -74.06 -0.64 2.27 16 37 H -0.29 -3.56 7.11 99.48 0.71 -2.85 16 38 H -0.26 -1.99 7.11 99.48 0.71 -1.28 16 39 H 0.15 0.26 5.13 -2.91 -0.01 0.25 16 40 H 0.07 -0.57 7.66 -2.39 -0.02 -0.59 16 41 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H 0.07 -0.55 7.66 -2.39 -0.02 -0.57 16 43 H 0.16 -1.29 6.29 -2.91 -0.02 -1.31 16 44 H 0.17 -1.76 6.29 -2.91 -0.02 -1.78 16 45 H 0.09 -0.48 8.14 -2.38 -0.02 -0.50 16 46 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.05 0.19 8.14 -2.38 -0.02 0.17 16 48 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 Total: 0.00 -26.08 396.01 1.85 -24.23 By element: Atomic # 1 Polarization: -19.07 SS G_CDS: -0.41 Total: -19.48 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 5.68 Total: 5.23 kcal Atomic # 7 Polarization: 4.12 SS G_CDS: -2.25 Total: 1.88 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -3.24 Total: -18.53 kcal Atomic # 14 Polarization: 4.60 SS G_CDS: 2.07 Total: 6.67 kcal Total: -26.08 1.85 -24.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_4974302.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.824 kcal (2) G-P(sol) polarization free energy of solvation -26.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds