Wall clock time and date at job start Sat Mar 6 2021 20:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47409 * 300.44671 * 3 2 1 5 5 C 1.53006 * 109.46868 * 60.44602 * 3 2 1 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47592 * 300.00035 * 6 5 3 8 8 H 1.09000 * 109.47140 * 300.00346 * 7 6 5 9 9 N 1.46500 * 109.47204 * 180.02562 * 7 6 5 10 10 C 1.34773 * 119.99955 * 85.00142 * 9 7 6 11 11 O 1.21282 * 120.00161 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00155 * 180.02562 * 10 9 7 13 13 O 1.42892 * 109.47632 * 179.97438 * 12 10 9 14 14 C 1.35895 * 117.00327 * 179.97438 * 13 12 10 15 15 C 1.38755 * 120.02780 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.97275 * 359.96337 * 15 14 13 17 17 O 1.42900 * 109.47138 * 284.99359 * 16 15 14 18 18 Si 1.86302 * 109.47241 * 164.99719 * 16 15 14 19 19 C 1.38201 * 120.05401 * 179.97438 * 15 14 13 20 20 C 1.38155 * 120.10755 * 359.97438 * 19 15 14 21 21 C 1.38789 * 120.05777 * 0.02562 * 20 19 15 22 22 O 1.35900 * 120.02934 * 180.02562 * 21 20 19 23 23 C 1.42893 * 116.99696 * 359.97438 * 22 21 20 24 24 C 1.38619 * 119.94494 * 359.74521 * 21 20 19 25 25 C 1.52996 * 109.47165 * 60.00300 * 7 6 5 26 26 C 1.52997 * 109.47101 * 180.44486 * 3 2 1 27 27 H 4.18748 * 15.03933 * 359.97438 * 4 2 1 28 28 H 1.08993 * 109.46955 * 300.00020 * 5 3 2 29 29 H 1.09000 * 109.47050 * 59.99849 * 5 3 2 30 30 H 1.09000 * 109.47160 * 60.00369 * 6 5 3 31 31 H 1.09002 * 109.46719 * 180.02562 * 6 5 3 32 32 H 0.97001 * 119.99882 * 265.00024 * 9 7 6 33 33 H 1.09006 * 109.47112 * 300.00094 * 12 10 9 34 34 H 1.08999 * 109.47140 * 59.99539 * 12 10 9 35 35 H 1.08996 * 109.47316 * 44.99702 * 16 15 14 36 36 H 0.96700 * 114.00494 * 179.97438 * 17 16 15 37 37 H 1.48500 * 109.99942 * 59.99691 * 18 16 15 38 38 H 1.48496 * 110.00348 * 181.31746 * 18 16 15 39 39 H 1.07999 * 119.94246 * 180.02562 * 19 15 14 40 40 H 1.07999 * 119.97061 * 180.02562 * 20 19 15 41 41 H 1.09004 * 109.47155 * 299.99684 * 23 22 21 42 42 H 1.08997 * 109.47635 * 60.00281 * 23 22 21 43 43 H 1.09005 * 109.46948 * 180.02562 * 23 22 21 44 44 H 1.07996 * 120.05511 * 180.25126 * 24 21 20 45 45 H 1.08992 * 109.47534 * 180.02562 * 25 7 6 46 46 H 1.08996 * 109.47134 * 59.99508 * 25 7 6 47 47 H 1.09000 * 109.47140 * 300.00349 * 26 3 2 48 48 H 1.09001 * 109.47230 * 59.99493 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.5199 0.8859 5 6 3.1563 -0.7107 -1.2549 6 6 4.6863 -0.7094 -1.2552 7 6 5.1952 0.7334 -1.2442 8 1 4.8312 1.2538 -2.1302 9 7 6.6602 0.7346 -1.2451 10 6 7.3334 0.6424 -2.4090 11 8 6.7265 0.5581 -3.4556 12 6 8.8404 0.6430 -2.4099 13 8 9.3161 0.5360 -3.7530 14 6 10.6632 0.5229 -3.9313 15 6 11.1935 0.4205 -5.2095 16 6 10.2749 0.3231 -6.4001 17 8 9.7102 -0.9882 -6.4600 18 14 11.2406 0.6550 -7.9584 19 6 12.5634 0.4077 -5.3915 20 6 13.4082 0.4972 -4.3019 21 6 12.8827 0.5997 -3.0215 22 8 13.7141 0.6882 -1.9501 23 6 15.1181 0.6692 -2.2154 24 6 11.5090 0.6176 -2.8367 25 6 4.6849 1.4447 0.0106 26 6 3.1553 1.4433 0.0112 27 1 -1.0501 0.0001 0.0007 28 1 2.7934 -1.7384 -1.2628 29 1 2.7927 -0.1901 -2.1408 30 1 5.0502 -1.2297 -0.3692 31 1 5.0498 -1.2157 -2.1494 32 1 7.1456 0.8016 -0.4080 33 1 9.2037 1.5711 -1.9683 34 1 9.2044 -0.2033 -1.8274 35 1 9.4763 1.0586 -6.3040 36 1 9.1067 -1.1231 -7.2034 37 1 12.3326 -0.3412 -8.1010 38 1 10.3396 0.5932 -9.1372 39 1 12.9742 0.3284 -6.3871 40 1 14.4784 0.4873 -4.4467 41 1 15.3811 -0.2638 -2.7139 42 1 15.3780 1.5103 -2.8580 43 1 15.6663 0.7460 -1.2764 44 1 11.0981 0.7014 -1.8414 45 1 5.0471 2.4727 0.0182 46 1 5.0488 0.9243 0.8965 47 1 2.7917 1.9639 -0.8747 48 1 2.7917 1.9501 0.9051 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_4974312.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:17:45 Heat of formation + Delta-G solvation = -60.069915 kcal Electronic energy + Delta-G solvation = -29857.387115 eV Core-core repulsion = 25653.235574 eV Total energy + Delta-G solvation = -4204.151542 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.84327 -41.13928 -40.07110 -39.29932 -38.23174 -37.09956 -35.91807 -33.63854 -32.40449 -31.87056 -31.56674 -30.58342 -28.82214 -28.31572 -26.07408 -24.45049 -23.80007 -23.35115 -22.37755 -21.60734 -21.12410 -19.88980 -19.06531 -18.56977 -18.52059 -17.85967 -17.46578 -17.41597 -16.98047 -16.86803 -16.64653 -16.12771 -15.75926 -15.61608 -15.58846 -15.29953 -15.21173 -15.12957 -14.70770 -14.10411 -14.03050 -13.94565 -13.78793 -13.56905 -13.37517 -13.27046 -13.20210 -12.79262 -12.50823 -12.42195 -12.32604 -12.18119 -11.99831 -11.94704 -11.75501 -11.65118 -11.60674 -11.05923 -10.95419 -10.90538 -10.41122 -10.17122 -9.70566 -9.10784 -4.94771 0.18779 0.29982 1.30099 1.42227 1.44229 1.58427 1.84837 1.88263 1.90771 2.24394 2.52523 2.57307 3.35556 3.46915 3.53786 3.64406 3.71245 3.72123 3.87943 3.95897 4.03456 4.05465 4.06854 4.13905 4.18968 4.21218 4.30287 4.35025 4.37823 4.40108 4.43034 4.44670 4.46397 4.61075 4.66251 4.72682 4.79534 4.98754 5.00300 5.03341 5.09108 5.11108 5.20112 5.22326 5.27315 5.29353 5.33292 5.43422 5.46835 6.12034 6.35236 6.45386 6.59210 6.68120 7.12241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.210 4.210 3 C 0.021 3.979 4 H 0.108 0.892 5 C -0.104 4.104 6 C -0.123 4.123 7 C 0.146 3.854 8 H 0.064 0.936 9 N -0.705 5.705 10 C 0.515 3.485 11 O -0.568 6.568 12 C 0.033 3.967 13 O -0.303 6.303 14 C 0.176 3.824 15 C -0.161 4.161 16 C -0.081 4.081 17 O -0.557 6.557 18 Si 0.779 3.221 19 C -0.042 4.042 20 C -0.238 4.238 21 C 0.165 3.835 22 O -0.328 6.328 23 C 0.015 3.985 24 C -0.251 4.251 25 C -0.115 4.115 26 C -0.105 4.105 27 H 0.237 0.763 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.421 0.579 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.387 0.613 37 H -0.280 1.280 38 H -0.291 1.291 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.118 0.882 44 H 0.157 0.843 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.058 0.942 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 3.611 5.866 8.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.210 4.210 3 C 0.003 3.997 4 H 0.126 0.874 5 C -0.142 4.142 6 C -0.162 4.162 7 C 0.042 3.958 8 H 0.082 0.918 9 N -0.359 5.359 10 C 0.301 3.699 11 O -0.446 6.446 12 C -0.044 4.044 13 O -0.215 6.215 14 C 0.130 3.870 15 C -0.162 4.162 16 C -0.188 4.188 17 O -0.366 6.366 18 Si 0.682 3.318 19 C -0.060 4.060 20 C -0.257 4.257 21 C 0.119 3.881 22 O -0.241 6.241 23 C -0.079 4.079 24 C -0.270 4.270 25 C -0.152 4.152 26 C -0.143 4.143 27 H 0.254 0.746 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.259 0.741 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.237 0.763 37 H -0.207 1.207 38 H -0.218 1.218 39 H 0.168 0.832 40 H 0.176 0.824 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.136 0.864 44 H 0.175 0.825 45 H 0.104 0.896 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.643 3.189 4.971 7.512 hybrid contribution -1.135 -1.052 -0.013 1.548 sum 3.508 2.137 4.958 6.439 Atomic orbital electron populations 1.25689 0.97000 1.00111 1.00315 1.23616 0.95278 1.01105 1.01019 1.18453 0.83601 0.97935 0.99723 0.87450 1.21449 0.94924 1.00836 0.97016 1.21862 0.95007 0.96693 1.02618 1.21008 0.78598 0.96262 0.99932 0.91771 1.45737 1.07210 1.74308 1.08648 1.20433 0.89535 0.75837 0.84118 1.90760 1.70801 1.49736 1.33279 1.22767 0.91437 1.06531 0.83712 1.86188 1.18931 1.87764 1.28596 1.18561 0.81717 0.93498 0.93240 1.18751 0.93900 1.11700 0.91857 1.24980 1.00805 0.86663 1.06362 1.86556 1.65221 1.31316 1.53533 0.94171 0.77994 0.87889 0.71705 1.20898 0.90809 0.94194 1.00068 1.21379 1.01897 1.11370 0.91031 1.18848 0.89937 0.92647 0.86698 1.86051 1.19311 1.87542 1.31208 1.23411 0.76677 1.02654 1.05114 1.20555 0.91357 1.15540 0.99531 1.21750 0.94902 1.01865 0.96732 1.21469 0.95063 0.94554 1.03170 0.74639 0.91338 0.92728 0.89467 0.93449 0.74068 0.85612 0.86444 0.91518 0.76340 1.20712 1.21835 0.83166 0.82422 0.91661 0.91024 0.86387 0.82538 0.89624 0.88544 0.92315 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.61 19.25 74.32 1.43 0.82 16 2 C -0.21 -0.80 12.56 31.13 0.39 -0.41 16 3 C 0.02 -0.02 2.57 -12.60 -0.03 -0.05 16 4 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 5 C -0.10 -0.10 5.16 30.60 0.16 0.05 16 6 C -0.12 0.00 5.49 30.59 0.17 0.16 16 7 C 0.15 -0.17 2.45 44.99 0.11 -0.06 16 8 H 0.06 0.32 7.58 -2.39 -0.02 0.30 16 9 N -0.71 2.34 5.08 -442.54 -2.25 0.09 16 10 C 0.51 2.27 7.87 87.66 0.69 2.96 16 11 O -0.57 -8.94 16.16 16.00 0.26 -8.69 16 12 C 0.03 0.00 5.22 71.24 0.37 0.37 16 13 O -0.30 -2.74 8.99 -73.34 -0.66 -3.40 16 14 C 0.18 1.30 6.66 22.49 0.15 1.45 16 15 C -0.16 -1.18 5.31 -19.75 -0.10 -1.29 16 16 C -0.08 -0.56 2.37 71.24 0.17 -0.40 16 17 O -0.56 -5.90 12.86 -148.98 -1.92 -7.82 16 18 Si 0.78 1.16 30.20 68.60 2.07 3.23 16 19 C -0.04 -0.14 8.65 22.24 0.19 0.06 16 20 C -0.24 -0.31 9.04 22.38 0.20 -0.11 16 21 C 0.17 0.52 6.68 22.49 0.15 0.67 16 22 O -0.33 -0.51 10.49 -92.42 -0.97 -1.48 16 23 C 0.02 -0.09 9.81 113.37 1.11 1.03 16 24 C -0.25 -0.87 8.97 22.46 0.20 -0.67 16 25 C -0.11 0.76 5.39 30.58 0.16 0.92 16 26 C -0.10 0.33 5.16 30.58 0.16 0.49 16 27 H 0.24 -0.79 7.80 -4.41 -0.03 -0.83 16 28 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.42 -4.70 8.60 -92.71 -0.80 -5.50 16 33 H 0.13 -0.83 7.65 -2.38 -0.02 -0.84 16 34 H 0.12 -0.58 7.67 -2.39 -0.02 -0.60 16 35 H 0.07 0.52 7.82 -2.39 -0.02 0.50 16 36 H 0.39 1.29 8.74 -74.06 -0.65 0.64 16 37 H -0.28 -1.51 6.75 99.48 0.67 -0.84 16 38 H -0.29 -1.78 7.11 99.48 0.71 -1.08 16 39 H 0.15 -0.05 4.89 -2.91 -0.01 -0.07 16 40 H 0.16 -0.66 6.29 -2.91 -0.02 -0.68 16 41 H 0.06 -0.44 7.66 -2.38 -0.02 -0.46 16 42 H 0.07 -0.56 7.66 -2.39 -0.02 -0.58 16 43 H 0.12 -1.05 8.14 -2.38 -0.02 -1.07 16 44 H 0.16 -0.27 6.30 -2.91 -0.02 -0.29 16 45 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 46 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 47 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 48 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: 0.00 -27.57 396.32 1.76 -25.81 By element: Atomic # 1 Polarization: -13.30 SS G_CDS: -0.46 Total: -13.76 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 5.68 Total: 6.01 kcal Atomic # 7 Polarization: 2.34 SS G_CDS: -2.25 Total: 0.09 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -3.29 Total: -21.39 kcal Atomic # 14 Polarization: 1.16 SS G_CDS: 2.07 Total: 3.23 kcal Total: -27.57 1.76 -25.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_4974312.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.260 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds