Wall clock time and date at job start Sat Mar 6 2021 20:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09003 * 109.47064 * 262.73626 * 3 2 1 5 5 C 1.53002 * 109.47255 * 22.73934 * 3 2 1 6 6 C 1.53000 * 109.47040 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47244 * 300.00074 * 6 5 3 8 8 H 1.08997 * 109.47393 * 300.00066 * 7 6 5 9 9 N 1.46497 * 109.47203 * 179.97438 * 7 6 5 10 10 C 1.34782 * 120.00257 * 155.00095 * 9 7 6 11 11 O 1.21287 * 119.99282 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00156 * 180.02562 * 10 9 7 13 13 O 1.42905 * 109.47280 * 179.97438 * 12 10 9 14 14 C 1.35990 * 117.00366 * 179.97438 * 13 12 10 15 15 C 1.39152 * 120.07342 * 179.97438 * 14 13 12 16 16 O 1.35992 * 120.07406 * 0.02562 * 15 14 13 17 17 C 1.42904 * 116.99956 * 179.97438 * 16 15 14 18 18 C 1.38570 * 119.85311 * 179.97438 * 15 14 13 19 19 C 1.38245 * 119.99723 * 0.02562 * 18 15 14 20 20 C 1.50700 * 119.92334 * 179.97438 * 19 18 15 21 21 O 1.42903 * 109.46801 * 65.00179 * 20 19 18 22 22 Si 1.86295 * 109.47088 * 184.99848 * 20 19 18 23 23 C 1.38250 * 120.14567 * 0.02562 * 19 18 15 24 24 C 1.38233 * 120.14989 * 359.95995 * 23 19 18 25 25 C 1.53002 * 109.47163 * 60.00000 * 7 6 5 26 26 C 1.53000 * 109.47040 * 300.00124 * 25 7 6 27 27 H 4.18738 * 15.03999 * 359.97438 * 4 2 1 28 28 H 1.08997 * 109.46913 * 59.99991 * 5 3 2 29 29 H 1.08992 * 109.46815 * 300.00018 * 5 3 2 30 30 H 1.08993 * 109.47092 * 179.97438 * 6 5 3 31 31 H 1.09003 * 109.46875 * 59.99940 * 6 5 3 32 32 H 0.96996 * 120.00182 * 335.00189 * 9 7 6 33 33 H 1.08993 * 109.47541 * 59.99513 * 12 10 9 34 34 H 1.09003 * 109.47206 * 299.99535 * 12 10 9 35 35 H 1.09004 * 109.46727 * 180.02562 * 17 16 15 36 36 H 1.09001 * 109.46790 * 299.99120 * 17 16 15 37 37 H 1.08998 * 109.47193 * 59.99618 * 17 16 15 38 38 H 1.07995 * 120.00074 * 180.29922 * 18 15 14 39 39 H 1.08995 * 109.47556 * 305.00099 * 20 19 18 40 40 H 0.96706 * 114.00056 * 60.00125 * 21 20 19 41 41 H 1.48507 * 109.99947 * 58.68345 * 22 20 19 42 42 H 1.48497 * 110.00119 * 180.02562 * 22 20 19 43 43 H 1.08007 * 119.92329 * 179.97438 * 23 19 18 44 44 H 1.08000 * 120.00165 * 180.02562 * 24 23 19 45 45 H 1.08997 * 109.46913 * 59.99772 * 25 7 6 46 46 H 1.09000 * 109.47333 * 180.02562 * 25 7 6 47 47 H 1.09011 * 109.47068 * 299.99806 * 26 25 7 48 48 H 1.09003 * 109.46920 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.1308 1.0194 5 6 3.1566 -1.3295 -0.5576 6 6 4.6866 -1.3285 -0.5582 7 6 5.1956 -0.1802 -1.4319 8 1 4.8320 -0.3104 -2.4511 9 7 6.6606 -0.1789 -1.4319 10 6 7.3340 0.3647 -2.4651 11 8 6.7270 0.8523 -3.3951 12 6 8.8409 0.3655 -2.4654 13 8 9.3167 0.9923 -3.6583 14 6 10.6648 1.0764 -3.8161 15 6 11.1977 1.6738 -4.9542 16 8 10.3716 2.1754 -5.9110 17 6 10.9889 2.7750 -7.0518 18 6 12.5721 1.7575 -5.1101 19 6 13.4105 1.2476 -4.1363 20 6 14.9049 1.3390 -4.3078 21 8 15.3027 2.7115 -4.2949 22 14 15.7464 0.4354 -2.9129 23 6 12.8809 0.6531 -3.0061 24 6 11.5108 0.5666 -2.8443 25 6 4.6850 1.1499 -0.8743 26 6 3.1550 1.1489 -0.8737 27 1 -1.0500 0.0005 -0.0002 28 1 2.7934 -1.4595 -1.5770 29 1 2.7937 -2.1475 0.0646 30 1 5.0504 -2.2762 -0.9549 31 1 5.0502 -1.1982 0.4611 32 1 7.1459 -0.5693 -0.6884 33 1 9.2049 -0.6611 -2.4248 34 1 9.2042 0.9143 -1.5965 35 1 10.2189 3.1336 -7.7350 36 1 11.6084 3.6127 -6.7314 37 1 11.6100 2.0367 -7.5589 38 1 12.9883 2.2251 -5.9902 39 1 15.1900 0.8871 -5.2578 40 1 15.0802 3.1778 -3.4774 41 1 15.3164 -0.9860 -2.8959 42 1 17.2207 0.5186 -3.0701 43 1 13.5392 0.2555 -2.2478 44 1 11.0997 0.1020 -1.9602 45 1 5.0486 1.2801 0.1450 46 1 5.0472 1.9680 -1.4969 47 1 2.7913 1.0187 -1.8931 48 1 2.7912 2.0968 -0.4769 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_60476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:17:52 Heat of formation + Delta-G solvation = -62.067744 kcal Electronic energy + Delta-G solvation = -29524.304363 eV Core-core repulsion = 25320.066189 eV Total energy + Delta-G solvation = -4204.238174 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.82762 -41.12477 -39.78483 -39.07564 -38.79355 -36.91708 -35.89136 -33.61817 -32.05935 -31.84308 -31.48154 -30.66121 -28.87278 -28.39217 -26.18876 -24.30605 -23.77365 -23.34046 -22.50847 -21.58200 -21.09668 -19.77900 -19.04942 -18.60987 -18.33702 -17.91655 -17.50471 -17.25530 -17.05181 -16.67828 -16.12324 -16.06366 -15.81305 -15.69187 -15.65659 -15.42626 -15.18100 -15.07715 -14.67742 -14.30414 -14.07601 -13.92358 -13.75287 -13.60105 -13.44476 -13.24619 -12.77254 -12.63478 -12.54554 -12.29660 -12.17521 -12.15130 -12.11545 -11.97224 -11.92884 -11.75129 -11.62639 -11.03072 -10.93272 -10.87563 -10.42724 -10.13472 -9.79021 -8.91155 -4.96369 0.16967 0.28263 1.34235 1.48399 1.50487 1.68562 1.86007 1.89487 2.01068 2.30594 2.56539 2.58577 3.37606 3.49956 3.56442 3.66171 3.70989 3.74166 3.87257 3.92379 4.05803 4.07785 4.13809 4.14247 4.16569 4.23799 4.28641 4.28942 4.35855 4.38363 4.42189 4.47201 4.49922 4.63747 4.64891 4.68769 4.75291 5.00826 5.01785 5.05934 5.11324 5.12824 5.13359 5.22063 5.29872 5.35926 5.37527 5.47622 5.60133 5.97464 6.44412 6.56345 6.69343 6.78380 7.18836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.210 4.210 3 C 0.021 3.979 4 H 0.110 0.890 5 C -0.105 4.105 6 C -0.114 4.114 7 C 0.145 3.855 8 H 0.060 0.940 9 N -0.704 5.704 10 C 0.511 3.489 11 O -0.574 6.574 12 C 0.034 3.966 13 O -0.315 6.315 14 C 0.085 3.915 15 C 0.075 3.925 16 O -0.335 6.335 17 C 0.021 3.979 18 C -0.153 4.153 19 C -0.120 4.120 20 C -0.077 4.077 21 O -0.558 6.558 22 Si 0.788 3.212 23 C -0.108 4.108 24 C -0.159 4.159 25 C -0.122 4.122 26 C -0.105 4.105 27 H 0.237 0.763 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.423 0.577 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.396 0.604 41 H -0.280 1.280 42 H -0.303 1.303 43 H 0.162 0.838 44 H 0.178 0.822 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.051 0.949 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 -2.937 9.045 9.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.210 4.210 3 C 0.003 3.997 4 H 0.128 0.872 5 C -0.143 4.143 6 C -0.152 4.152 7 C 0.041 3.959 8 H 0.078 0.922 9 N -0.358 5.358 10 C 0.297 3.703 11 O -0.452 6.452 12 C -0.043 4.043 13 O -0.229 6.229 14 C 0.039 3.961 15 C 0.030 3.970 16 O -0.249 6.249 17 C -0.074 4.074 18 C -0.172 4.172 19 C -0.121 4.121 20 C -0.186 4.186 21 O -0.366 6.366 22 Si 0.693 3.307 23 C -0.125 4.125 24 C -0.177 4.177 25 C -0.161 4.161 26 C -0.143 4.143 27 H 0.253 0.747 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.261 0.739 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.157 0.843 39 H 0.120 0.880 40 H 0.246 0.754 41 H -0.206 1.206 42 H -0.232 1.232 43 H 0.179 0.821 44 H 0.195 0.805 45 H 0.109 0.891 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.409 -3.315 7.863 8.867 hybrid contribution -0.338 0.159 -1.072 1.136 sum 2.072 -3.156 6.790 7.769 Atomic orbital electron populations 1.25686 0.97016 1.00015 1.00546 1.23647 0.95323 1.01110 1.00895 1.18461 0.83515 0.96204 1.01477 0.87241 1.21481 0.95213 0.96108 1.01544 1.21751 0.94772 0.97442 1.01199 1.20993 0.78854 0.95953 1.00124 0.92195 1.45713 1.07056 1.60360 1.22657 1.20607 0.89946 0.77547 0.82181 1.90779 1.71009 1.46318 1.37125 1.22799 0.90957 1.01931 0.88653 1.86225 1.18883 1.76125 1.41664 1.18599 0.82753 1.00401 0.94309 1.18685 0.89603 0.99160 0.89574 1.86190 1.35236 1.72976 1.30532 1.23273 1.00472 0.97612 0.86004 1.21012 0.90101 1.04139 1.01969 1.20204 0.96197 1.00518 0.95159 1.25281 0.93002 0.89552 1.10785 1.86469 1.82778 1.22140 1.45202 0.93664 0.75479 0.77853 0.83661 1.21010 0.94902 0.99488 0.97124 1.21402 0.93369 1.03261 0.99661 1.21858 0.94841 0.96993 1.02394 1.21460 0.95121 0.98190 0.99556 0.74697 0.92555 0.89935 0.89756 0.88267 0.73873 0.85543 0.85172 0.87127 0.91705 0.91934 0.84330 0.88004 0.75446 1.20631 1.23177 0.82119 0.80464 0.89124 0.93425 0.92974 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.57 19.25 74.32 1.43 0.86 16 2 C -0.21 -0.72 12.56 31.13 0.39 -0.33 16 3 C 0.02 -0.03 2.57 -12.60 -0.03 -0.06 16 4 H 0.11 -0.51 8.14 -2.39 -0.02 -0.53 16 5 C -0.11 0.38 5.16 30.60 0.16 0.54 16 6 C -0.11 0.85 5.39 30.59 0.16 1.01 16 7 C 0.15 -0.28 2.46 44.99 0.11 -0.17 16 8 H 0.06 0.30 7.58 -2.39 -0.02 0.29 16 9 N -0.70 3.42 5.08 -442.54 -2.25 1.17 16 10 C 0.51 1.68 7.87 87.65 0.69 2.37 16 11 O -0.57 -9.33 16.16 15.98 0.26 -9.07 16 12 C 0.03 -0.10 5.22 71.23 0.37 0.27 16 13 O -0.32 -2.67 9.45 -67.03 -0.63 -3.31 16 14 C 0.08 0.46 6.70 22.57 0.15 0.61 16 15 C 0.08 0.63 6.70 22.57 0.15 0.78 16 16 O -0.33 -3.90 10.28 -79.60 -0.82 -4.71 16 17 C 0.02 0.06 9.81 113.37 1.11 1.18 16 18 C -0.15 -0.64 8.67 22.35 0.19 -0.45 16 19 C -0.12 -0.01 5.35 -19.86 -0.11 -0.12 16 20 C -0.08 0.09 2.80 71.24 0.20 0.29 16 21 O -0.56 0.05 12.83 -148.98 -1.91 -1.86 16 22 Si 0.79 -3.39 29.79 68.60 2.04 -1.35 16 23 C -0.11 0.41 8.66 22.27 0.19 0.60 16 24 C -0.16 0.50 9.04 22.35 0.20 0.70 16 25 C -0.12 0.12 5.49 30.60 0.17 0.29 16 26 C -0.11 -0.05 5.16 30.59 0.16 0.11 16 27 H 0.24 -0.82 7.80 -4.42 -0.03 -0.86 16 28 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 31 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 32 H 0.42 -5.73 8.60 -92.71 -0.80 -6.53 16 33 H 0.13 -1.26 7.66 -2.39 -0.02 -1.28 16 34 H 0.13 -1.37 7.66 -2.39 -0.02 -1.39 16 35 H 0.11 0.05 8.14 -2.38 -0.02 0.03 16 36 H 0.06 0.05 7.66 -2.39 -0.02 0.03 16 37 H 0.06 0.05 7.67 -2.39 -0.02 0.04 16 38 H 0.14 0.42 6.30 -2.91 -0.02 0.40 16 39 H 0.10 0.06 7.96 -2.39 -0.02 0.04 16 40 H 0.40 -3.28 8.70 -74.05 -0.64 -3.93 16 41 H -0.28 0.11 7.11 99.48 0.71 0.81 16 42 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 43 H 0.16 -1.63 4.89 -2.91 -0.01 -1.64 16 44 H 0.18 -2.08 6.30 -2.91 -0.02 -2.10 16 45 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 46 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 47 H 0.05 0.21 8.14 -2.38 -0.02 0.19 16 48 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 Total: 0.00 -32.16 396.88 1.98 -30.18 By element: Atomic # 1 Polarization: -19.12 SS G_CDS: -0.42 Total: -19.54 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.71 Total: 8.48 kcal Atomic # 7 Polarization: 3.42 SS G_CDS: -2.25 Total: 1.17 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -3.11 Total: -18.95 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: 2.04 Total: -1.35 kcal Total: -32.16 1.98 -30.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_60476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.885 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds