Wall clock time and date at job start Sat Mar 6 2021 23:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47339 * 2 1 4 4 C 1.35907 * 116.99720 * 275.75703 * 3 2 1 5 5 C 1.38728 * 120.05549 * 4.90911 * 4 3 2 6 6 C 1.38153 * 119.94343 * 179.74647 * 5 4 3 7 7 C 1.38266 * 120.05325 * 0.50755 * 6 5 4 8 8 C 1.50696 * 119.94319 * 179.74464 * 7 6 5 9 9 O 1.42896 * 109.47113 * 245.01863 * 8 7 6 10 10 Si 1.86302 * 109.47221 * 5.02506 * 8 7 6 11 11 C 1.38267 * 120.10884 * 359.76723 * 7 6 5 12 12 C 1.38138 * 120.05787 * 359.97438 * 11 7 6 13 13 C 1.50695 * 109.47337 * 120.00138 * 2 1 3 14 14 O 1.21282 * 120.00015 * 244.99804 * 13 2 1 15 15 N 1.34774 * 120.00380 * 64.99971 * 13 2 1 16 16 C 1.46504 * 120.00408 * 185.14435 * 15 13 2 17 17 C 1.50703 * 112.84701 * 60.21109 * 16 15 13 18 18 C 1.38242 * 119.98711 * 213.64283 * 17 16 15 19 19 C 1.38223 * 120.00899 * 180.02562 * 18 17 16 20 20 C 1.38317 * 119.98659 * 0.24920 * 19 18 17 21 21 Br 1.89108 * 120.00731 * 179.72730 * 20 19 18 22 22 C 1.38328 * 119.98412 * 359.47004 * 20 19 18 23 23 C 1.38224 * 119.98481 * 0.55793 * 22 20 19 24 24 C 1.53780 * 113.68781 * 288.94702 * 16 15 13 25 25 C 1.53782 * 87.07810 * 270.87127 * 24 16 15 26 26 H 1.09007 * 113.61512 * 220.02247 * 25 24 16 27 27 O 1.42901 * 113.69162 * 89.13149 * 25 24 16 28 28 C 1.53782 * 113.61661 * 191.40798 * 16 15 13 29 29 H 1.08997 * 109.47112 * 59.99977 * 1 2 3 30 30 H 1.08998 * 109.46691 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46719 * 299.99809 * 1 2 3 32 32 H 1.09006 * 109.47272 * 239.99840 * 2 1 3 33 33 H 1.08001 * 120.03258 * 359.97438 * 5 4 3 34 34 H 1.07997 * 119.97046 * 180.22686 * 6 5 4 35 35 H 1.09000 * 109.46959 * 125.02065 * 8 7 6 36 36 H 0.96700 * 113.99604 * 60.00746 * 9 8 7 37 37 H 1.48498 * 110.00196 * 58.67619 * 10 8 7 38 38 H 1.48494 * 110.00004 * 180.02562 * 10 8 7 39 39 H 1.08003 * 119.96586 * 180.02562 * 11 7 6 40 40 H 1.08007 * 120.02608 * 179.97438 * 12 11 7 41 41 H 0.96997 * 120.00001 * 5.13916 * 15 13 2 42 42 H 1.08005 * 119.99814 * 359.97438 * 18 17 16 43 43 H 1.07992 * 120.00331 * 179.97438 * 19 18 17 44 44 H 1.08000 * 120.00576 * 180.25083 * 22 20 19 45 45 H 1.08001 * 119.99020 * 179.71739 * 23 22 20 46 46 H 1.08994 * 113.61561 * 25.41932 * 24 16 15 47 47 H 1.09003 * 113.61493 * 156.32158 * 24 16 15 48 48 H 0.96694 * 113.99964 * 82.46218 * 27 25 24 49 49 H 1.08992 * 113.61596 * 203.74772 * 28 16 15 50 50 H 1.09002 * 113.61162 * 334.65353 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0975 1.9694 -1.2049 5 6 1.6410 1.3347 -2.3509 6 6 1.7300 1.9714 -3.5737 7 6 2.2831 3.2359 -3.6574 8 6 2.3842 3.9257 -4.9934 9 8 3.7603 4.1002 -5.3364 10 14 1.5467 2.8870 -6.2936 11 6 2.7440 3.8682 -2.5174 12 6 2.6524 3.2380 -1.2916 13 6 2.0324 -0.7104 1.2304 14 8 2.6531 -0.0979 2.0733 15 7 1.7920 -2.0264 1.3941 16 6 2.1807 -2.6927 2.6397 17 6 1.5053 -2.1062 3.8525 18 6 2.1725 -2.0647 5.0625 19 6 1.5533 -1.5273 6.1753 20 6 0.2640 -1.0357 6.0792 21 35 -0.5866 -0.3074 7.6031 22 6 -0.4011 -1.0721 4.8668 23 6 0.2187 -1.6102 3.7547 24 6 3.7006 -2.8610 2.8020 25 6 3.5510 -4.2040 2.0680 26 1 4.1688 -5.0001 2.4838 27 8 3.6648 -4.0979 0.6475 28 6 2.0975 -4.2267 2.5697 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.2131 0.3452 -2.2867 34 1 1.3714 1.4792 -4.4656 35 1 1.8975 4.8994 -4.9372 36 1 4.2566 3.2730 -5.4042 37 1 0.1226 2.6717 -5.9321 38 1 1.6400 3.5562 -7.6159 39 1 3.1752 4.8561 -2.5854 40 1 3.0130 3.7322 -0.4015 41 1 1.3616 -2.5324 0.6874 42 1 3.1775 -2.4530 5.1386 43 1 2.0744 -1.4953 7.1206 44 1 -1.4064 -0.6847 4.7904 45 1 -0.3022 -1.6428 2.8092 46 1 4.2830 -2.1239 2.2493 47 1 4.0203 -2.9633 3.8391 48 1 4.5767 -4.0832 0.3260 49 1 1.9789 -4.7024 3.5431 50 1 1.3857 -4.5919 1.8293 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_10157680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:41:10 Heat of formation + Delta-G solvation = -46.409345 kcal Electronic energy + Delta-G solvation = -36065.190566 eV Core-core repulsion = 31265.361107 eV Total energy + Delta-G solvation = -4799.829459 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 448.076 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.28908 -41.47466 -40.08302 -39.46804 -38.82824 -37.14972 -36.23776 -34.53247 -33.17430 -32.92750 -32.06807 -31.83032 -31.45589 -30.32158 -27.05234 -26.75790 -26.06623 -25.01385 -24.10870 -23.75831 -22.70980 -22.28749 -21.39843 -20.38165 -19.48039 -18.70224 -18.59838 -18.07115 -17.83280 -17.08963 -16.85991 -16.77740 -16.50007 -16.27178 -16.13385 -15.95077 -15.68626 -15.59213 -15.29675 -15.16807 -14.95232 -14.65468 -14.52305 -14.44502 -14.26894 -14.08849 -13.76642 -13.60786 -13.49440 -13.41558 -13.30598 -13.11679 -12.87696 -12.55516 -12.29135 -12.25030 -12.23970 -12.06816 -12.02892 -11.71611 -11.64889 -11.51748 -11.33259 -10.94638 -10.73461 -10.40098 -10.13937 -10.06990 -10.06057 -9.58146 -9.23786 -4.99107 -0.01465 0.25569 0.26278 0.28118 0.59023 1.33951 1.44845 1.48579 1.65634 1.99198 2.42636 2.53775 2.63492 3.10634 3.40397 3.46273 3.52303 3.56372 3.59976 3.65765 3.71933 3.81462 3.84992 3.86600 3.87079 3.87448 3.93908 4.23881 4.27436 4.34251 4.37517 4.40697 4.48264 4.56703 4.58563 4.61251 4.68958 4.69806 4.80382 4.85071 4.89921 4.94834 4.98963 5.02422 5.06789 5.13635 5.16528 5.17087 5.23963 5.31642 5.47899 5.59100 5.68810 5.74947 6.26282 6.47625 6.79630 6.86047 7.15363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.064 3.936 3 O -0.313 6.313 4 C 0.123 3.877 5 C -0.202 4.202 6 C -0.072 4.072 7 C -0.161 4.161 8 C -0.074 4.074 9 O -0.558 6.558 10 Si 0.781 3.219 11 C -0.060 4.060 12 C -0.168 4.168 13 C 0.521 3.479 14 O -0.553 6.553 15 N -0.680 5.680 16 C 0.191 3.809 17 C -0.060 4.060 18 C -0.110 4.110 19 C -0.097 4.097 20 C -0.106 4.106 21 Br -0.059 7.059 22 C -0.099 4.099 23 C -0.108 4.108 24 C -0.177 4.177 25 C 0.088 3.912 26 H 0.092 0.908 27 O -0.560 6.560 28 C -0.114 4.114 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.127 0.873 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.102 0.898 36 H 0.395 0.605 37 H -0.282 1.282 38 H -0.303 1.303 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.420 0.580 42 H 0.151 0.849 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.397 0.603 49 H 0.124 0.876 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 -10.234 -4.329 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.005 3.995 3 O -0.226 6.226 4 C 0.077 3.923 5 C -0.220 4.220 6 C -0.089 4.089 7 C -0.162 4.162 8 C -0.183 4.183 9 O -0.367 6.367 10 Si 0.687 3.313 11 C -0.078 4.078 12 C -0.187 4.187 13 C 0.307 3.693 14 O -0.429 6.429 15 N -0.334 5.334 16 C 0.104 3.896 17 C -0.062 4.062 18 C -0.129 4.129 19 C -0.117 4.117 20 C -0.185 4.185 21 Br 0.027 6.973 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.215 4.215 25 C 0.029 3.971 26 H 0.110 0.890 27 O -0.368 6.368 28 C -0.152 4.152 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.179 0.821 34 H 0.173 0.827 35 H 0.120 0.880 36 H 0.245 0.755 37 H -0.208 1.208 38 H -0.231 1.231 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.259 0.741 42 H 0.169 0.831 43 H 0.160 0.840 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.078 0.922 47 H 0.128 0.872 48 H 0.247 0.753 49 H 0.142 0.858 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.261 -8.866 -3.506 9.617 hybrid contribution 0.552 0.855 0.138 1.027 sum -0.709 -8.011 -3.368 8.719 Atomic orbital electron populations 1.22387 0.90802 1.05680 1.04289 1.22405 0.96950 0.82014 0.98140 1.86201 1.81361 1.27040 1.28018 1.19226 0.95723 0.92812 0.84504 1.21493 1.06278 1.02693 0.91563 1.21057 0.96569 0.93411 0.97859 1.20354 1.03517 0.96280 0.96020 1.25194 0.88839 1.05532 0.98748 1.86468 1.20791 1.37421 1.91970 0.93797 0.78528 0.85284 0.73674 1.20909 0.96490 0.99727 0.90707 1.20602 1.04557 0.94434 0.99066 1.20374 0.79104 0.82517 0.87334 1.90767 1.40185 1.66900 1.45094 1.45269 1.62171 1.07705 1.18238 1.20001 0.94753 0.93140 0.81667 1.20073 0.94049 0.97248 0.94818 1.21300 1.00641 0.99409 0.91518 1.21305 0.92933 0.97169 1.00261 1.21966 0.97357 1.05922 0.93282 1.96744 1.79679 1.83995 1.36908 1.21272 1.00612 0.98754 0.91272 1.21097 0.94941 0.98051 0.98583 1.24213 0.95014 0.99379 1.02928 1.22664 0.97495 0.95412 0.81543 0.88990 1.86349 1.34153 1.96524 1.19807 1.23432 0.96998 0.90776 1.03956 0.89527 0.87173 0.92405 0.85602 0.82084 0.82663 0.88047 0.75531 1.20837 1.23129 0.85012 0.85838 0.74149 0.83134 0.84012 0.84393 0.84211 0.92172 0.87165 0.75327 0.85776 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.02 9.11 71.98 0.66 1.67 16 2 C 0.06 -0.08 2.64 29.85 0.08 0.00 16 3 O -0.31 -2.17 9.34 -73.51 -0.69 -2.85 16 4 C 0.12 0.52 6.59 22.50 0.15 0.67 16 5 C -0.20 0.39 8.22 22.37 0.18 0.58 16 6 C -0.07 0.20 8.66 22.26 0.19 0.39 16 7 C -0.16 -0.08 5.35 -19.85 -0.11 -0.19 16 8 C -0.07 0.02 2.80 71.23 0.20 0.22 16 9 O -0.56 -0.44 12.83 -148.98 -1.91 -2.36 16 10 Si 0.78 -2.51 29.80 68.60 2.04 -0.46 16 11 C -0.06 -0.21 9.68 22.25 0.22 0.00 16 12 C -0.17 -0.97 9.99 22.36 0.22 -0.75 16 13 C 0.52 1.44 6.43 87.66 0.56 2.01 16 14 O -0.55 -7.34 15.30 15.95 0.24 -7.10 16 15 N -0.68 2.73 3.97 -423.92 -1.68 1.04 16 16 C 0.19 -0.59 0.88 3.38 0.00 -0.59 16 17 C -0.06 -0.06 4.27 -19.86 -0.08 -0.14 16 18 C -0.11 -0.15 9.28 22.27 0.21 0.06 16 19 C -0.10 -0.33 9.79 22.28 0.22 -0.11 16 20 C -0.11 -0.54 6.22 22.31 0.14 -0.40 16 21 Br -0.06 -0.31 33.70 -20.37 -0.69 -1.00 16 22 C -0.10 -0.36 9.79 22.29 0.22 -0.15 16 23 C -0.11 -0.17 9.09 22.26 0.20 0.03 16 24 C -0.18 0.52 6.58 31.12 0.20 0.72 16 25 C 0.09 -0.66 5.27 31.12 0.16 -0.49 16 26 H 0.09 -0.95 8.14 -2.38 -0.02 -0.97 16 27 O -0.56 3.83 13.10 -148.98 -1.95 1.88 16 28 C -0.11 0.91 7.18 31.12 0.22 1.13 16 29 H 0.09 -0.60 6.87 -2.39 -0.02 -0.61 16 30 H 0.11 -1.34 8.10 -2.39 -0.02 -1.36 16 31 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.13 -0.90 6.33 -2.38 -0.02 -0.92 16 33 H 0.16 -1.35 5.42 -2.91 -0.02 -1.36 16 34 H 0.16 -1.33 4.90 -2.91 -0.01 -1.35 16 35 H 0.10 0.14 7.96 -2.39 -0.02 0.12 16 36 H 0.39 -2.95 8.70 -74.06 -0.64 -3.59 16 37 H -0.28 -0.24 7.11 99.48 0.71 0.47 16 38 H -0.30 -1.48 7.11 99.48 0.71 -0.77 16 39 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 40 H 0.12 0.83 8.06 -2.91 -0.02 0.80 16 41 H 0.42 -4.02 8.60 -92.71 -0.80 -4.82 16 42 H 0.15 -0.44 5.69 -2.91 -0.02 -0.46 16 43 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 44 H 0.14 0.19 8.06 -2.91 -0.02 0.17 16 45 H 0.14 -0.33 7.67 -2.91 -0.02 -0.36 16 46 H 0.06 0.17 7.70 -2.39 -0.02 0.15 16 47 H 0.11 -0.54 5.66 -2.39 -0.01 -0.55 16 48 H 0.40 -4.86 9.12 -74.06 -0.68 -5.54 16 49 H 0.12 -1.22 8.09 -2.39 -0.02 -1.23 16 50 H 0.10 -0.91 8.09 -2.39 -0.02 -0.93 16 Total: 0.00 -27.14 427.49 -1.83 -28.97 By element: Atomic # 1 Polarization: -21.74 SS G_CDS: -1.04 Total: -22.78 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 3.85 Total: 4.66 kcal Atomic # 7 Polarization: 2.73 SS G_CDS: -1.68 Total: 1.04 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -4.31 Total: -10.43 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.04 Total: -0.46 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -0.69 Total: -1.00 kcal Total: -27.14 -1.83 -28.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_10157680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.443 kcal (2) G-P(sol) polarization free energy of solvation -27.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds