Wall clock time and date at job start Sat Mar 6 2021 23:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47286 * 2 1 4 4 C 1.50708 * 109.47066 * 240.00088 * 2 1 3 5 5 C 1.35449 * 126.06599 * 120.02390 * 4 2 1 6 6 N 1.35539 * 108.86640 * 180.22648 * 5 4 2 7 7 C 1.37643 * 108.64469 * 359.63126 * 6 5 4 8 8 C 1.46684 * 126.23078 * 180.17715 * 7 6 5 9 9 O 1.21696 * 119.99518 * 180.22550 * 8 7 6 10 10 N 1.34768 * 119.99905 * 0.22186 * 8 7 6 11 11 C 1.46502 * 119.99913 * 175.34504 * 10 8 7 12 12 C 1.50700 * 112.84951 * 294.39983 * 11 10 8 13 13 C 1.38241 * 119.99060 * 161.80129 * 12 11 10 14 14 C 1.38215 * 120.01075 * 179.76931 * 13 12 11 15 15 C 1.38326 * 119.98988 * 0.50398 * 14 13 12 16 16 Br 1.89103 * 120.01092 * 179.77091 * 15 14 13 17 17 C 1.38333 * 119.97875 * 359.74819 * 15 14 13 18 18 C 1.38214 * 119.98857 * 359.97438 * 17 15 14 19 19 C 1.53776 * 113.61536 * 163.20033 * 11 10 8 20 20 C 1.54053 * 86.98896 * 270.83927 * 19 11 10 21 21 H 1.08998 * 113.62199 * 220.02658 * 20 19 11 22 22 O 1.42898 * 113.61151 * 89.11433 * 20 19 11 23 23 C 1.53786 * 113.61501 * 65.59180 * 11 10 8 24 24 C 1.37876 * 107.53715 * 0.36512 * 7 6 5 25 25 H 0.96696 * 113.99792 * 300.00276 * 1 2 3 26 26 H 1.09000 * 109.47271 * 119.99817 * 2 1 3 27 27 H 1.48503 * 110.00063 * 178.68372 * 3 2 1 28 28 H 1.48506 * 110.00007 * 300.00046 * 3 2 1 29 29 H 1.08006 * 125.56778 * 359.96430 * 5 4 2 30 30 H 0.97002 * 125.67008 * 179.76685 * 6 5 4 31 31 H 0.96995 * 120.00373 * 355.34494 * 10 8 7 32 32 H 1.08003 * 119.99483 * 0.02562 * 13 12 11 33 33 H 1.08006 * 120.00976 * 180.23353 * 14 13 12 34 34 H 1.07994 * 120.00705 * 179.97438 * 17 15 14 35 35 H 1.07999 * 119.99775 * 180.02562 * 18 17 15 36 36 H 1.08998 * 113.61893 * 25.43672 * 19 11 10 37 37 H 1.09009 * 113.61204 * 156.33624 * 19 11 10 38 38 H 0.96701 * 113.99811 * 82.51254 * 22 20 19 39 39 H 1.08997 * 113.61607 * 203.66670 * 23 11 10 40 40 H 1.09000 * 113.61510 * 334.48824 * 23 11 10 41 41 H 1.07993 * 126.45958 * 179.80173 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7136 -0.1740 -2.1975 6 7 2.9520 -1.1169 -3.1416 7 6 2.3186 -2.2812 -2.7705 8 6 2.3260 -3.5466 -3.5124 9 8 1.7205 -4.5093 -3.0793 10 7 3.0032 -3.6429 -4.6736 11 6 3.0958 -4.9324 -5.3627 12 6 3.8793 -5.9573 -4.5837 13 6 3.7530 -7.3001 -4.8867 14 6 4.4750 -8.2401 -4.1756 15 6 5.3161 -7.8378 -3.1539 16 35 6.2993 -9.1238 -2.1764 17 6 5.4383 -6.4943 -2.8477 18 6 4.7202 -5.5546 -3.5630 19 6 3.5274 -4.8150 -6.8340 20 6 2.0318 -4.6787 -7.1773 21 1 1.7401 -5.2156 -8.0798 22 8 1.5601 -3.3300 -7.1554 23 6 1.7443 -5.4530 -5.8800 24 6 1.6724 -2.0403 -1.5766 25 1 -0.3933 0.4417 0.7650 26 1 1.7923 -0.5138 0.8900 27 1 3.5346 1.7702 0.0321 28 1 1.5615 2.4679 -1.2085 29 1 3.0833 0.8406 -2.2155 30 1 3.4825 -0.9923 -3.9441 31 1 3.4293 -2.8585 -5.0531 32 1 3.0931 -7.6145 -5.6818 33 1 4.3791 -9.2890 -4.4148 34 1 6.0945 -6.1797 -2.0498 35 1 4.8158 -4.5057 -3.3243 36 1 4.1094 -3.9186 -7.0482 37 1 3.9850 -5.7223 -7.2286 38 1 1.7379 -2.8379 -7.9686 39 1 1.7153 -6.5342 -6.0141 40 1 0.8879 -5.0723 -5.3234 41 1 1.0787 -2.7458 -1.0145 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_10543058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:41:16 Heat of formation + Delta-G solvation = 4.036608 kcal Electronic energy + Delta-G solvation = -28395.230387 eV Core-core repulsion = 24290.146089 eV Total energy + Delta-G solvation = -4105.084298 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.041 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.73693 -41.94128 -39.81816 -39.29583 -37.59710 -36.36772 -34.39013 -33.22208 -32.71334 -32.05264 -30.87239 -30.32037 -27.10126 -26.74664 -25.69318 -24.26406 -23.77929 -22.44172 -21.38910 -20.84635 -20.39445 -19.77388 -18.73253 -18.28030 -17.90411 -17.25541 -17.15299 -16.48014 -16.33851 -16.05936 -15.76163 -15.50345 -15.26086 -15.12675 -14.84570 -14.77305 -14.65203 -14.47017 -14.33420 -14.10857 -13.78215 -13.45200 -13.40245 -13.07879 -12.66159 -12.49391 -12.47221 -12.30751 -11.94861 -11.76742 -11.61134 -11.35301 -11.15953 -11.02601 -10.35395 -10.27508 -10.11977 -9.95126 -9.62356 -9.42705 -4.87805 -0.05951 0.20938 0.23887 0.55818 1.29514 1.44606 1.75738 1.77687 1.94744 2.04234 2.17723 2.43717 3.06398 3.36648 3.44160 3.55283 3.59145 3.65441 3.67386 3.82314 3.84146 3.89458 4.02806 4.19909 4.22003 4.30364 4.34710 4.53873 4.60773 4.63307 4.74970 4.76199 4.77578 4.81069 4.87619 4.92019 4.97380 5.08350 5.11657 5.23130 5.43138 5.52345 5.60264 5.69380 6.20289 6.38941 6.86266 7.00325 7.00755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.572 6.572 2 C -0.059 4.059 3 Si 0.788 3.212 4 C -0.188 4.188 5 C 0.032 3.968 6 N -0.514 5.514 7 C -0.061 4.061 8 C 0.595 3.405 9 O -0.556 6.556 10 N -0.686 5.686 11 C 0.188 3.812 12 C -0.061 4.061 13 C -0.107 4.107 14 C -0.092 4.092 15 C -0.105 4.105 16 Br -0.055 7.055 17 C -0.099 4.099 18 C -0.111 4.111 19 C -0.144 4.144 20 C 0.087 3.913 21 H 0.097 0.903 22 O -0.567 6.567 23 C -0.142 4.142 24 C -0.104 4.104 25 H 0.399 0.601 26 H 0.077 0.923 27 H -0.279 1.279 28 H -0.290 1.290 29 H 0.189 0.811 30 H 0.436 0.564 31 H 0.411 0.589 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.135 0.865 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.398 0.602 39 H 0.121 0.879 40 H 0.053 0.947 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 5.717 -4.502 7.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.381 6.381 2 C -0.168 4.168 3 Si 0.691 3.309 4 C -0.194 4.194 5 C -0.106 4.106 6 N -0.111 5.111 7 C -0.175 4.175 8 C 0.383 3.617 9 O -0.433 6.433 10 N -0.337 5.337 11 C 0.101 3.899 12 C -0.063 4.063 13 C -0.126 4.126 14 C -0.111 4.111 15 C -0.185 4.185 16 Br 0.030 6.970 17 C -0.118 4.118 18 C -0.130 4.130 19 C -0.181 4.181 20 C 0.027 3.973 21 H 0.115 0.885 22 O -0.375 6.375 23 C -0.180 4.180 24 C -0.131 4.131 25 H 0.250 0.750 26 H 0.095 0.905 27 H -0.205 1.205 28 H -0.217 1.217 29 H 0.206 0.794 30 H 0.277 0.723 31 H 0.248 0.752 32 H 0.176 0.824 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.117 0.883 37 H 0.142 0.858 38 H 0.249 0.751 39 H 0.139 0.861 40 H 0.072 0.928 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.595 4.612 -4.382 7.308 hybrid contribution 0.279 0.138 -0.919 0.971 sum 3.874 4.750 -5.302 8.104 Atomic orbital electron populations 1.86463 1.18171 1.82492 1.50973 1.24423 0.85095 1.11517 0.95732 0.93843 0.77532 0.74120 0.85361 1.19228 1.05765 0.94701 0.99716 1.21979 1.03051 0.95312 0.90234 1.41762 1.40291 1.08446 1.20625 1.20304 1.08917 0.88063 1.00184 1.17044 0.78393 0.85769 0.80467 1.90857 1.44474 1.38711 1.69304 1.45203 1.54811 1.11371 1.22359 1.20076 0.96046 0.82156 0.91630 1.20093 0.95649 0.94666 0.95854 1.21228 0.99343 0.91237 1.00818 1.21347 0.94615 1.01364 0.93822 1.21961 1.02380 0.93652 1.00457 1.96747 1.72359 1.54641 1.73213 1.21214 0.99552 0.91294 0.99776 1.20988 0.96668 0.99578 0.95743 1.24068 0.98167 1.05763 0.90137 1.22758 0.92814 0.83817 0.97876 0.88526 1.86494 1.82359 1.24190 1.44482 1.23638 0.96492 1.01500 0.96375 1.21220 1.00177 0.96442 0.95228 0.75005 0.90473 1.20549 1.21722 0.79386 0.72319 0.75241 0.82411 0.83343 0.84755 0.85818 0.88294 0.85754 0.75140 0.86074 0.92837 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.02 12.86 -148.98 -1.92 -3.93 16 2 C -0.06 -0.11 3.01 71.24 0.21 0.11 16 3 Si 0.79 -2.76 30.59 68.60 2.10 -0.66 16 4 C -0.19 -1.25 5.47 -20.12 -0.11 -1.36 16 5 C 0.03 0.06 10.45 83.48 0.87 0.93 16 6 N -0.51 0.21 5.99 -183.61 -1.10 -0.89 16 7 C -0.06 -0.44 7.05 40.35 0.28 -0.15 16 8 C 0.60 5.06 6.36 86.45 0.55 5.61 16 9 O -0.56 -9.46 15.43 -4.34 -0.07 -9.53 16 10 N -0.69 -0.25 3.79 -427.84 -1.62 -1.87 16 11 C 0.19 -0.09 0.92 3.38 0.00 -0.09 16 12 C -0.06 -0.16 4.68 -19.86 -0.09 -0.25 16 13 C -0.11 -0.09 8.97 22.27 0.20 0.11 16 14 C -0.09 -0.25 9.79 22.29 0.22 -0.03 16 15 C -0.11 -0.58 6.22 22.31 0.14 -0.44 16 16 Br -0.06 -0.29 33.70 -20.37 -0.69 -0.98 16 17 C -0.10 -0.55 9.79 22.29 0.22 -0.33 16 18 C -0.11 -0.52 8.92 22.27 0.20 -0.32 16 19 C -0.14 1.09 7.15 31.21 0.22 1.31 16 20 C 0.09 -0.44 5.28 31.22 0.16 -0.28 16 21 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 22 O -0.57 1.77 13.09 -148.98 -1.95 -0.18 16 23 C -0.14 -0.15 6.58 31.12 0.20 0.05 16 24 C -0.10 -1.14 10.59 22.57 0.24 -0.90 16 25 H 0.40 -2.98 8.74 -74.06 -0.65 -3.63 16 26 H 0.08 -0.03 7.96 -2.39 -0.02 -0.05 16 27 H -0.28 -0.02 7.11 99.48 0.71 0.68 16 28 H -0.29 -0.78 7.11 99.48 0.71 -0.07 16 29 H 0.19 -0.60 6.19 -2.91 -0.02 -0.62 16 30 H 0.44 -3.68 8.20 -92.71 -0.76 -4.44 16 31 H 0.41 -2.34 7.80 -92.71 -0.72 -3.06 16 32 H 0.16 -0.77 6.26 -2.91 -0.02 -0.78 16 33 H 0.15 -0.10 8.06 -2.91 -0.02 -0.13 16 34 H 0.13 0.51 8.06 -2.91 -0.02 0.49 16 35 H 0.12 0.44 6.91 -2.91 -0.02 0.42 16 36 H 0.10 -1.03 8.09 -2.39 -0.02 -1.05 16 37 H 0.12 -1.26 7.95 -2.38 -0.02 -1.27 16 38 H 0.40 -4.73 9.12 -74.06 -0.68 -5.41 16 39 H 0.12 -0.31 6.00 -2.39 -0.01 -0.33 16 40 H 0.05 0.52 7.23 -2.39 -0.02 0.50 16 41 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 Total: 0.00 -28.53 363.67 -3.34 -31.87 By element: Atomic # 1 Polarization: -16.18 SS G_CDS: -1.63 Total: -17.81 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 3.53 Total: 3.98 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -2.72 Total: -2.77 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -3.93 Total: -13.64 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: 2.10 Total: -0.66 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -0.69 Total: -0.98 kcal Total: -28.53 -3.34 -31.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_10543058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.908 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds