Wall clock time and date at job start Sat Mar 6 2021 23:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86294 * 109.47109 * 2 1 4 4 C 1.50701 * 109.47183 * 239.99636 * 2 1 3 5 5 C 1.37851 * 119.89439 * 300.00659 * 4 2 1 6 6 C 1.39655 * 119.87820 * 180.02562 * 5 4 2 7 7 C 1.47692 * 120.16299 * 179.97438 * 6 5 4 8 8 O 1.21580 * 119.99702 * 180.02562 * 7 6 5 9 9 N 1.34766 * 120.00746 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00735 * 174.79732 * 9 7 6 11 11 C 1.50698 * 112.85223 * 76.02289 * 10 9 7 12 12 C 1.38244 * 119.98815 * 184.86793 * 11 10 9 13 13 C 1.38217 * 120.00648 * 179.72891 * 12 11 10 14 14 C 1.38320 * 119.98861 * 0.54165 * 13 12 11 15 15 Br 1.89109 * 120.00941 * 179.70839 * 14 13 12 16 16 C 1.38326 * 119.98226 * 359.73042 * 14 13 12 17 17 C 1.38218 * 119.98800 * 359.97438 * 16 14 13 18 18 C 1.53786 * 113.60693 * 304.82512 * 10 9 7 19 19 C 1.53776 * 87.08578 * 270.88288 * 18 10 9 20 20 H 1.08997 * 113.62180 * 219.93790 * 19 18 10 21 21 O 1.42897 * 113.61200 * 89.11597 * 19 18 10 22 22 C 1.53787 * 113.61437 * 207.33388 * 10 9 7 23 23 C 1.39825 * 119.66922 * 359.97438 * 6 5 4 24 24 F 1.35096 * 120.11246 * 179.97438 * 23 6 5 25 25 C 1.38323 * 119.77683 * 0.28351 * 23 6 5 26 26 C 1.38201 * 120.11488 * 359.44052 * 25 23 6 27 27 H 0.96700 * 114.00048 * 299.99609 * 1 2 3 28 28 H 1.09003 * 109.46683 * 119.99921 * 2 1 3 29 29 H 1.48496 * 110.00263 * 300.00034 * 3 2 1 30 30 H 1.48503 * 109.99945 * 61.31940 * 3 2 1 31 31 H 1.08008 * 120.06034 * 359.97438 * 5 4 2 32 32 H 0.97009 * 119.99663 * 354.79150 * 9 7 6 33 33 H 1.08006 * 119.99568 * 359.97438 * 12 11 10 34 34 H 1.08005 * 120.00105 * 180.29522 * 13 12 11 35 35 H 1.08002 * 120.00113 * 180.02562 * 16 14 13 36 36 H 1.08000 * 119.99415 * 179.97438 * 17 16 14 37 37 H 1.08998 * 113.61458 * 25.43827 * 18 10 9 38 38 H 1.09004 * 113.60830 * 156.33793 * 18 10 9 39 39 H 0.96707 * 113.99937 * 180.02562 * 21 19 18 40 40 H 1.08999 * 113.61218 * 203.65635 * 22 10 9 41 41 H 1.08995 * 113.61479 * 334.56259 * 22 10 9 42 42 H 1.07998 * 119.93889 * 179.72429 * 25 23 6 43 43 H 1.08004 * 119.83126 * 180.28513 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.5969 -2.0303 -1.4464 6 6 2.0631 -2.6885 -2.5865 7 6 1.7091 -4.1026 -2.8238 8 8 2.1170 -4.6728 -3.8171 9 7 0.9340 -4.7609 -1.9395 10 6 0.4887 -6.1261 -2.2296 11 6 1.5768 -7.1504 -2.0350 12 6 1.3472 -8.4733 -2.3641 13 6 2.3467 -9.4121 -2.1910 14 6 3.5731 -9.0298 -1.6781 15 35 4.9383 -10.3152 -1.4334 16 6 3.8004 -7.7069 -1.3437 17 6 2.8023 -6.7677 -1.5228 18 6 -0.2514 -6.2605 -3.5709 19 6 -1.5440 -5.9459 -2.7997 20 1 -2.3993 -6.5411 -3.1194 21 8 -1.8381 -4.5497 -2.7209 22 6 -0.8394 -6.4985 -1.5494 23 6 2.8666 -2.0021 -3.5020 24 9 3.3229 -2.6303 -4.6076 25 6 3.1981 -0.6796 -3.2688 26 6 2.7271 -0.0353 -2.1404 27 1 -0.3933 0.4416 0.7651 28 1 1.7923 -0.5138 0.8900 29 1 1.5616 2.4679 -1.2084 30 1 1.5879 2.4585 1.2243 31 1 0.9762 -2.5545 -0.7348 32 1 0.6710 -4.3308 -1.1107 33 1 0.3879 -8.7726 -2.7601 34 1 2.1688 -10.4448 -2.4526 35 1 4.7580 -7.4080 -0.9436 36 1 2.9796 -5.7349 -1.2614 37 1 0.0204 -5.4955 -4.2982 38 1 -0.2246 -7.2684 -3.9852 39 1 -2.6498 -4.3454 -2.2365 40 1 -0.9733 -7.5713 -1.4111 41 1 -1.0423 -5.9254 -0.6447 42 1 3.8222 -0.1482 -3.9719 43 1 2.9850 0.9987 -1.9652 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_12335834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:41:46 Heat of formation + Delta-G solvation = -53.732851 kcal Electronic energy + Delta-G solvation = -32677.044379 eV Core-core repulsion = 28037.200804 eV Total energy + Delta-G solvation = -4639.843575 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.036 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -50.02008 -42.29950 -40.74790 -39.70289 -39.20772 -37.59021 -36.31482 -34.46033 -33.18967 -32.62242 -32.33298 -31.83996 -30.31913 -27.00867 -26.61377 -26.22126 -24.99435 -23.93731 -23.10913 -22.35505 -21.52450 -20.35041 -19.22395 -18.75393 -18.57720 -18.20948 -17.96978 -17.60231 -16.92307 -16.86022 -16.45476 -16.37044 -16.08335 -15.89144 -15.71252 -15.65819 -15.28233 -15.08743 -14.63305 -14.47072 -14.44059 -14.37602 -14.05689 -13.83047 -13.76554 -13.39340 -13.24440 -13.15275 -12.74571 -12.58629 -12.47131 -12.42020 -12.28719 -11.84327 -11.68085 -11.51297 -11.32462 -10.98728 -10.96510 -10.53050 -10.37384 -10.10797 -10.07562 -9.79567 -9.57903 -4.89697 -0.49082 -0.02891 -0.01860 0.25487 0.59078 1.29802 1.61972 1.63552 1.87781 1.99246 2.46782 2.47259 3.04249 3.10271 3.26130 3.34753 3.45102 3.50581 3.57722 3.62082 3.72657 3.73087 3.84559 3.87205 4.03646 4.13755 4.26030 4.33466 4.36848 4.38839 4.58042 4.60175 4.64169 4.75792 4.79755 4.80982 4.84364 4.85952 4.93112 4.96434 5.00098 5.13059 5.14868 5.15917 5.29448 5.57924 5.59956 5.73449 6.36343 6.61568 6.90188 7.08736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.078 4.078 3 Si 0.755 3.245 4 C -0.096 4.096 5 C -0.023 4.023 6 C -0.188 4.188 7 C 0.561 3.439 8 O -0.556 6.556 9 N -0.681 5.681 10 C 0.188 3.812 11 C -0.063 4.063 12 C -0.106 4.106 13 C -0.092 4.092 14 C -0.105 4.105 15 Br -0.056 7.056 16 C -0.099 4.099 17 C -0.108 4.108 18 C -0.139 4.139 19 C 0.086 3.914 20 H 0.096 0.904 21 O -0.566 6.566 22 C -0.144 4.144 23 C 0.131 3.869 24 F -0.136 7.136 25 C -0.153 4.153 26 C -0.055 4.055 27 H 0.398 0.602 28 H 0.109 0.891 29 H -0.297 1.297 30 H -0.286 1.286 31 H 0.157 0.843 32 H 0.414 0.586 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.052 0.948 38 H 0.118 0.882 39 H 0.397 0.603 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.167 0.833 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 2.899 7.965 9.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.187 4.187 3 Si 0.661 3.339 4 C -0.096 4.096 5 C -0.042 4.042 6 C -0.192 4.192 7 C 0.349 3.651 8 O -0.434 6.434 9 N -0.333 5.333 10 C 0.101 3.899 11 C -0.065 4.065 12 C -0.125 4.125 13 C -0.112 4.112 14 C -0.185 4.185 15 Br 0.029 6.971 16 C -0.119 4.119 17 C -0.127 4.127 18 C -0.177 4.177 19 C 0.026 3.974 20 H 0.113 0.887 21 O -0.374 6.374 22 C -0.182 4.182 23 C 0.111 3.889 24 F -0.115 7.115 25 C -0.172 4.172 26 C -0.073 4.073 27 H 0.249 0.751 28 H 0.127 0.873 29 H -0.224 1.224 30 H -0.213 1.213 31 H 0.174 0.826 32 H 0.253 0.747 33 H 0.177 0.823 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.071 0.929 38 H 0.136 0.864 39 H 0.248 0.752 40 H 0.144 0.856 41 H 0.117 0.883 42 H 0.185 0.815 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.820 2.546 6.438 7.475 hybrid contribution -1.518 0.286 0.502 1.624 sum -4.338 2.832 6.940 8.661 Atomic orbital electron populations 1.86542 1.17971 1.80656 1.51339 1.24885 0.84479 1.11363 0.97946 0.94263 0.90391 0.72464 0.76813 1.19508 0.99118 0.93904 0.97073 1.21154 0.94885 0.94107 0.94061 1.20099 1.05290 0.94902 0.98865 1.18148 0.78137 0.85894 0.82916 1.90849 1.53991 1.69092 1.29513 1.45195 1.51365 1.14306 1.22446 1.20076 0.91340 0.80097 0.98425 1.20166 0.94871 0.94610 0.96866 1.21182 1.00386 0.91294 0.99669 1.21339 0.91176 1.01306 0.97372 1.21956 0.95143 0.93957 1.07423 1.96744 1.49393 1.54581 1.96335 1.21220 1.00102 0.91406 0.99182 1.20997 0.93027 0.99255 0.99445 1.23567 0.94808 1.03313 0.96028 1.22712 0.96579 0.82875 0.95205 0.88668 1.86508 1.48907 1.22814 1.79204 1.24041 0.90806 1.04321 0.98999 1.18183 0.95419 0.91882 0.83452 1.91554 1.86583 1.82721 1.50599 1.21354 1.03381 0.91914 1.00533 1.21318 0.94161 1.00468 0.91325 0.75081 0.87305 1.22408 1.21327 0.82594 0.74741 0.82269 0.83327 0.84762 0.86031 0.92884 0.86376 0.75244 0.85569 0.88308 0.81497 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.19 12.74 -148.98 -1.90 0.29 16 2 C -0.08 0.51 2.81 71.24 0.20 0.71 16 3 Si 0.76 -4.93 29.78 68.60 2.04 -2.88 16 4 C -0.10 0.23 5.42 -19.90 -0.11 0.12 16 5 C -0.02 0.01 9.09 22.52 0.20 0.22 16 6 C -0.19 -1.09 5.88 -20.05 -0.12 -1.21 16 7 C 0.56 4.90 6.18 86.74 0.54 5.44 16 8 O -0.56 -9.61 13.58 -3.97 -0.05 -9.66 16 9 N -0.68 -0.89 3.62 -426.90 -1.54 -2.44 16 10 C 0.19 0.06 0.97 3.39 0.00 0.06 16 11 C -0.06 -0.18 5.06 -19.86 -0.10 -0.28 16 12 C -0.11 -0.03 8.43 22.27 0.19 0.16 16 13 C -0.09 -0.21 9.79 22.28 0.22 0.01 16 14 C -0.11 -0.56 6.22 22.31 0.14 -0.42 16 15 Br -0.06 -0.29 33.70 -20.37 -0.69 -0.98 16 16 C -0.10 -0.57 9.79 22.29 0.22 -0.35 16 17 C -0.11 -0.58 9.00 22.26 0.20 -0.38 16 18 C -0.14 -0.34 6.53 31.12 0.20 -0.14 16 19 C 0.09 -0.32 5.28 31.12 0.16 -0.16 16 20 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 21 O -0.57 0.72 13.08 -148.98 -1.95 -1.23 16 22 C -0.14 0.98 7.11 31.13 0.22 1.20 16 23 C 0.13 1.02 7.29 22.67 0.17 1.18 16 24 F -0.14 -1.97 15.55 44.97 0.70 -1.27 16 25 C -0.15 -0.12 10.01 22.28 0.22 0.11 16 26 C -0.06 0.16 8.66 22.31 0.19 0.35 16 27 H 0.40 -4.59 8.74 -74.06 -0.65 -5.23 16 28 H 0.11 -1.25 7.96 -2.39 -0.02 -1.27 16 29 H -0.30 -0.31 7.11 99.48 0.71 0.39 16 30 H -0.29 0.49 7.11 99.48 0.71 1.20 16 31 H 0.16 -0.86 6.42 -2.91 -0.02 -0.88 16 32 H 0.41 -1.72 6.81 -92.70 -0.63 -2.35 16 33 H 0.16 -0.94 6.74 -2.91 -0.02 -0.96 16 34 H 0.15 -0.18 8.06 -2.91 -0.02 -0.20 16 35 H 0.13 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.12 0.60 6.53 -2.91 -0.02 0.58 16 37 H 0.05 0.61 6.67 -2.39 -0.02 0.59 16 38 H 0.12 -0.11 6.66 -2.38 -0.02 -0.12 16 39 H 0.40 -3.91 9.12 -74.05 -0.68 -4.59 16 40 H 0.13 -1.27 7.29 -2.39 -0.02 -1.29 16 41 H 0.10 -0.92 8.13 -2.39 -0.02 -0.94 16 42 H 0.17 -0.61 8.06 -2.91 -0.02 -0.64 16 43 H 0.17 -1.34 4.86 -2.91 -0.01 -1.35 16 Total: 0.00 -27.40 378.01 -1.43 -28.83 By element: Atomic # 1 Polarization: -16.49 SS G_CDS: -0.79 Total: -17.28 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 2.75 Total: 6.62 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: -1.54 Total: -2.44 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -3.90 Total: -10.60 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.70 Total: -1.27 kcal Atomic # 14 Polarization: -4.93 SS G_CDS: 2.04 Total: -2.88 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -0.69 Total: -0.98 kcal Total: -27.40 -1.43 -28.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_12335834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.902 kcal (2) G-P(sol) polarization free energy of solvation -27.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds