Wall clock time and date at job start Sat Mar 6 2021 23:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42890 * 1 3 3 Si 1.86297 * 109.47292 * 2 1 4 4 C 1.50702 * 109.47352 * 239.99866 * 2 1 3 5 5 C 1.35084 * 126.07845 * 104.83917 * 4 2 1 6 6 N 1.35041 * 107.97917 * 180.20288 * 5 4 2 7 7 C 1.46503 * 125.92738 * 179.83880 * 6 5 4 8 8 C 1.50704 * 109.46914 * 124.71446 * 7 6 5 9 9 O 1.21281 * 120.00257 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46491 * 120.00197 * 185.40030 * 10 8 7 12 12 C 1.50707 * 112.84611 * 293.83377 * 11 10 8 13 13 C 1.38240 * 119.98811 * 162.52592 * 12 11 10 14 14 C 1.38219 * 120.00897 * 179.72718 * 13 12 11 15 15 C 1.38328 * 119.98973 * 0.54734 * 14 13 12 16 16 Br 1.89104 * 120.01210 * 179.70237 * 15 14 13 17 17 C 1.38323 * 119.97580 * 359.73316 * 15 14 13 18 18 C 1.38218 * 119.99275 * 359.97438 * 17 15 14 19 19 C 1.53778 * 113.69237 * 162.57097 * 11 10 8 20 20 C 1.53782 * 87.07959 * 270.86523 * 19 11 10 21 21 H 1.08993 * 113.61655 * 220.01515 * 20 19 11 22 22 O 1.42903 * 113.61037 * 89.11477 * 20 19 11 23 23 C 1.53775 * 113.61852 * 65.02861 * 11 10 8 24 24 N 1.40069 * 108.14061 * 359.57088 * 6 5 4 25 25 C 1.31621 * 108.10780 * 0.26699 * 24 6 5 26 26 C 1.48421 * 126.04051 * 179.97438 * 25 24 6 27 27 C 1.39322 * 120.11928 * 135.84622 * 26 25 24 28 28 C 1.38029 * 119.87893 * 179.72761 * 27 26 25 29 29 C 1.38317 * 120.11394 * 0.54664 * 28 27 26 30 30 C 1.38321 * 120.24550 * 359.73056 * 29 28 27 31 31 C 1.38022 * 120.11571 * 359.97438 * 30 29 28 32 32 H 0.96698 * 114.00150 * 300.00408 * 1 2 3 33 33 H 1.09000 * 109.47200 * 119.99784 * 2 1 3 34 34 H 1.48502 * 110.00385 * 178.68166 * 3 2 1 35 35 H 1.48505 * 109.99893 * 299.99581 * 3 2 1 36 36 H 1.08004 * 126.01113 * 0.06911 * 5 4 2 37 37 H 1.08996 * 109.47374 * 4.71578 * 7 6 5 38 38 H 1.08994 * 109.46786 * 244.70942 * 7 6 5 39 39 H 0.97000 * 119.99513 * 5.39115 * 10 8 7 40 40 H 1.08003 * 119.99955 * 359.97438 * 13 12 11 41 41 H 1.08000 * 120.00524 * 180.25628 * 14 13 12 42 42 H 1.08011 * 120.00174 * 179.97438 * 17 15 14 43 43 H 1.08005 * 119.99102 * 180.02562 * 18 17 15 44 44 H 1.08996 * 113.61531 * 25.41911 * 19 11 10 45 45 H 1.09007 * 113.61440 * 156.31973 * 19 11 10 46 46 H 0.96703 * 113.99802 * 82.50030 * 22 20 19 47 47 H 1.09004 * 113.61738 * 203.74655 * 23 11 10 48 48 H 1.08995 * 113.61593 * 334.57315 * 23 11 10 49 49 H 1.08003 * 120.06436 * 359.97427 * 27 26 25 50 50 H 1.07996 * 119.94196 * 180.27716 * 28 27 26 51 51 H 1.08005 * 119.87809 * 179.70220 * 29 28 27 52 52 H 1.07992 * 119.94002 * 180.02562 * 30 29 28 53 53 H 1.08001 * 120.05571 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.4601 -0.1249 -2.3269 6 7 2.7826 -1.0988 -3.2050 7 6 3.3811 -0.9003 -4.5274 8 6 4.6514 -1.7047 -4.6297 9 8 5.0207 -2.3771 -3.6903 10 7 5.3777 -1.6759 -5.7646 11 6 6.5466 -2.5471 -5.9085 12 6 7.6606 -2.1934 -4.9570 13 6 8.6671 -3.1061 -4.7018 14 6 9.6920 -2.7801 -3.8335 15 6 9.7044 -1.5447 -3.2113 16 35 11.1018 -1.1012 -2.0169 17 6 8.6939 -0.6341 -3.4626 18 6 7.6727 -0.9587 -4.3357 19 6 7.0118 -2.7217 -7.3638 20 6 6.0459 -3.9154 -7.4465 21 1 6.4472 -4.7643 -8.0001 22 8 4.7259 -3.5560 -7.8594 23 6 6.2005 -4.0453 -5.9220 24 7 2.4511 -2.3321 -2.6296 25 6 1.9377 -2.1034 -1.4394 26 6 1.4508 -3.1315 -0.4861 27 6 1.7769 -3.0420 0.8654 28 6 1.3168 -3.9978 1.7485 29 6 0.5428 -5.0493 1.2919 30 6 0.2209 -5.1462 -0.0498 31 6 0.6707 -4.1926 -0.9405 32 1 -0.3933 0.4417 0.7650 33 1 1.7922 -0.5138 0.8900 34 1 3.5346 1.7703 0.0321 35 1 1.5615 2.4678 -1.2086 36 1 2.5985 0.9358 -2.4760 37 1 3.6079 0.1564 -4.6687 38 1 2.6810 -1.2277 -5.2959 39 1 5.1263 -1.0785 -6.4863 40 1 8.6548 -4.0725 -5.1838 41 1 10.4804 -3.4916 -3.6373 42 1 8.7030 0.3305 -2.9767 43 1 6.8840 -0.2475 -4.5322 44 1 6.7358 -1.8908 -8.0131 45 1 8.0612 -3.0019 -7.4562 46 1 4.6224 -3.4727 -8.8173 47 1 7.0281 -4.6874 -5.6203 48 1 5.2703 -4.2832 -5.4062 49 1 2.3852 -2.2240 1.2222 50 1 1.5652 -3.9270 2.7972 51 1 0.1889 -5.7977 1.9855 52 1 -0.3840 -5.9690 -0.4009 53 1 0.4191 -4.2694 -1.9880 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_12622748.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:42:54 Heat of formation + Delta-G solvation = 75.150114 kcal Electronic energy + Delta-G solvation = -41205.381232 eV Core-core repulsion = 36058.437317 eV Total energy + Delta-G solvation = -5146.943915 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 484.083 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.67953 -42.15964 -40.11239 -39.76726 -39.39923 -37.62020 -36.33941 -34.96755 -34.16940 -33.24263 -32.49529 -32.14265 -31.91398 -31.52696 -30.41874 -28.88951 -27.07072 -26.18343 -25.52558 -24.27478 -23.87679 -23.48199 -22.63840 -21.98621 -21.68286 -20.93509 -20.38524 -18.81066 -18.62372 -18.49408 -18.22118 -17.84736 -17.60199 -17.02939 -16.63009 -16.48369 -16.30581 -16.12769 -15.95274 -15.79268 -15.51946 -15.44918 -15.24441 -15.04964 -14.89799 -14.70237 -14.48809 -14.44279 -14.35254 -14.29380 -14.00723 -13.81504 -13.64780 -13.49446 -13.32149 -13.10975 -12.68944 -12.65700 -12.47945 -12.32982 -12.30983 -12.16445 -11.94784 -11.79671 -11.76751 -11.54175 -11.38684 -11.23074 -11.00012 -10.70053 -10.19260 -10.15496 -10.14132 -9.92849 -9.88555 -9.62784 -9.40134 -4.95538 -0.07368 0.06198 0.19054 0.43269 0.52736 0.62100 1.10926 1.33840 1.39980 1.52588 1.71556 1.92424 1.97554 2.41727 2.84114 3.04765 3.17716 3.35091 3.41747 3.42767 3.50194 3.58567 3.64884 3.71754 3.78123 3.79663 3.84866 3.91723 3.97237 4.02426 4.08169 4.17083 4.22485 4.27365 4.29673 4.33117 4.44477 4.51773 4.52098 4.59866 4.67342 4.74689 4.77172 4.79321 4.81107 4.89510 4.92081 4.94056 5.06325 5.07577 5.08537 5.20551 5.23131 5.51488 5.53843 5.54388 5.55432 5.67354 5.70720 6.00528 6.37346 6.43305 6.87885 7.00419 7.09954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.047 4.047 3 Si 0.782 3.218 4 C -0.226 4.226 5 C 0.055 3.945 6 N -0.356 5.356 7 C 0.107 3.893 8 C 0.500 3.500 9 O -0.543 6.543 10 N -0.684 5.684 11 C 0.193 3.807 12 C -0.058 4.058 13 C -0.112 4.112 14 C -0.095 4.095 15 C -0.106 4.106 16 Br -0.056 7.056 17 C -0.101 4.101 18 C -0.105 4.105 19 C -0.143 4.143 20 C 0.089 3.911 21 H 0.092 0.908 22 O -0.564 6.564 23 C -0.142 4.142 24 N -0.284 5.284 25 C 0.111 3.889 26 C -0.027 4.027 27 C -0.105 4.105 28 C -0.118 4.118 29 C -0.116 4.116 30 C -0.125 4.125 31 C -0.113 4.113 32 H 0.398 0.602 33 H 0.076 0.924 34 H -0.293 1.293 35 H -0.277 1.277 36 H 0.197 0.803 37 H 0.168 0.832 38 H 0.138 0.862 39 H 0.421 0.579 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.119 0.881 46 H 0.399 0.601 47 H 0.113 0.887 48 H 0.047 0.953 49 H 0.131 0.869 50 H 0.153 0.847 51 H 0.151 0.849 52 H 0.142 0.858 53 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 4.185 -4.512 6.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.156 4.156 3 Si 0.685 3.315 4 C -0.237 4.237 5 C -0.091 4.091 6 N -0.138 5.138 7 C -0.017 4.017 8 C 0.285 3.715 9 O -0.418 6.418 10 N -0.338 5.338 11 C 0.106 3.894 12 C -0.060 4.060 13 C -0.131 4.131 14 C -0.114 4.114 15 C -0.186 4.186 16 Br 0.030 6.970 17 C -0.121 4.121 18 C -0.124 4.124 19 C -0.181 4.181 20 C 0.030 3.970 21 H 0.110 0.890 22 O -0.372 6.372 23 C -0.180 4.180 24 N -0.105 5.105 25 C -0.054 4.054 26 C -0.029 4.029 27 C -0.124 4.124 28 C -0.136 4.136 29 C -0.134 4.134 30 C -0.143 4.143 31 C -0.133 4.133 32 H 0.248 0.752 33 H 0.094 0.906 34 H -0.220 1.220 35 H -0.203 1.203 36 H 0.213 0.787 37 H 0.186 0.814 38 H 0.156 0.844 39 H 0.259 0.741 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.152 0.848 43 H 0.147 0.853 44 H 0.121 0.879 45 H 0.137 0.863 46 H 0.250 0.750 47 H 0.131 0.869 48 H 0.066 0.934 49 H 0.149 0.851 50 H 0.171 0.829 51 H 0.168 0.832 52 H 0.160 0.840 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.000 3.296 -4.793 5.902 hybrid contribution -0.358 0.164 -0.752 0.849 sum 0.642 3.459 -5.545 6.567 Atomic orbital electron populations 1.86486 1.17656 1.82425 1.50751 1.24335 0.85470 1.10828 0.94992 0.94139 0.77154 0.74343 0.85862 1.19876 1.12590 0.92126 0.99105 1.22570 1.00411 0.96011 0.90060 1.48073 1.47835 1.03406 1.14474 1.21956 0.93595 1.04529 0.81594 1.20793 0.85286 0.82526 0.82879 1.90839 1.70191 1.42196 1.38599 1.45258 1.27743 1.42885 1.17936 1.19980 0.83481 0.90418 0.95535 1.20116 0.95249 0.93835 0.96790 1.21213 0.93367 1.00092 0.98384 1.21319 0.99439 0.94845 0.95838 1.21947 0.96817 0.98424 1.01373 1.96740 1.46153 1.93842 1.60301 1.21235 0.93393 0.99386 0.98105 1.20989 0.97764 0.97175 0.96495 1.23992 1.01794 1.00437 0.91829 1.22641 0.83254 0.96611 0.94498 0.88973 1.86474 1.28515 1.92211 1.30028 1.23597 1.02327 0.95603 0.96509 1.77712 1.19550 1.03461 1.09823 1.20962 0.98174 0.93438 0.92825 1.17947 0.99209 0.93516 0.92248 1.21290 0.99769 0.99903 0.91479 1.21421 0.97483 0.93949 1.00724 1.21608 0.97468 0.98570 0.95747 1.21358 1.00204 0.98871 0.93833 1.21232 0.97938 0.94275 0.99818 0.75166 0.90622 1.21989 1.20331 0.78659 0.81437 0.84444 0.74072 0.82885 0.83661 0.84796 0.85271 0.87856 0.86266 0.75005 0.86851 0.93422 0.85104 0.82898 0.83174 0.83989 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.24 12.86 -148.98 -1.92 -4.15 16 2 C -0.05 -0.18 2.54 71.24 0.18 0.00 16 3 Si 0.78 -1.10 30.78 68.60 2.11 1.01 16 4 C -0.23 -2.41 5.39 -19.95 -0.11 -2.52 16 5 C 0.05 0.41 9.96 83.47 0.83 1.25 16 6 N -0.36 -3.25 3.40 -351.91 -1.20 -4.45 16 7 C 0.11 -0.06 6.99 85.63 0.60 0.54 16 8 C 0.50 2.17 6.44 87.66 0.56 2.74 16 9 O -0.54 -8.36 14.19 -3.03 -0.04 -8.40 16 10 N -0.68 1.80 3.79 -423.94 -1.61 0.20 16 11 C 0.19 -0.25 0.93 3.38 0.00 -0.24 16 12 C -0.06 -0.15 4.55 -19.86 -0.09 -0.24 16 13 C -0.11 -0.22 8.93 22.27 0.20 -0.02 16 14 C -0.09 -0.37 9.79 22.29 0.22 -0.15 16 15 C -0.11 -0.67 6.22 22.31 0.14 -0.53 16 16 Br -0.06 -0.34 33.70 -20.37 -0.69 -1.02 16 17 C -0.10 -0.59 9.79 22.29 0.22 -0.37 16 18 C -0.11 -0.44 8.68 22.26 0.19 -0.25 16 19 C -0.14 1.12 7.14 31.12 0.22 1.35 16 20 C 0.09 -0.47 5.28 31.12 0.16 -0.30 16 21 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 22 O -0.56 2.39 13.09 -148.98 -1.95 0.44 16 23 C -0.14 -0.20 6.64 31.12 0.21 0.00 16 24 N -0.28 -4.80 11.67 -48.15 -0.56 -5.37 16 25 C 0.11 1.72 6.66 42.53 0.28 2.00 16 26 C -0.03 -0.37 5.73 -20.04 -0.11 -0.48 16 27 C -0.11 -0.91 8.87 22.48 0.20 -0.71 16 28 C -0.12 -0.52 10.03 22.24 0.22 -0.29 16 29 C -0.12 -0.48 10.04 22.31 0.22 -0.25 16 30 C -0.12 -0.88 10.03 22.24 0.22 -0.66 16 31 C -0.11 -1.39 9.78 22.48 0.22 -1.17 16 32 H 0.40 -2.78 8.74 -74.06 -0.65 -3.43 16 33 H 0.08 0.14 5.62 -2.39 -0.01 0.12 16 34 H -0.29 -1.36 7.11 99.48 0.71 -0.65 16 35 H -0.28 -0.66 7.04 99.48 0.70 0.04 16 36 H 0.20 0.16 6.36 -2.91 -0.02 0.14 16 37 H 0.17 -1.73 8.07 -2.39 -0.02 -1.75 16 38 H 0.14 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.42 -4.03 8.67 -92.71 -0.80 -4.84 16 40 H 0.15 -0.48 6.30 -2.91 -0.02 -0.50 16 41 H 0.15 0.12 8.06 -2.91 -0.02 0.10 16 42 H 0.13 0.52 8.06 -2.91 -0.02 0.49 16 43 H 0.13 0.19 6.88 -2.91 -0.02 0.17 16 44 H 0.10 -1.15 8.10 -2.39 -0.02 -1.17 16 45 H 0.12 -1.14 7.92 -2.38 -0.02 -1.16 16 46 H 0.40 -5.13 9.12 -74.06 -0.68 -5.80 16 47 H 0.11 -0.10 6.03 -2.38 -0.01 -0.11 16 48 H 0.05 0.49 7.49 -2.39 -0.02 0.48 16 49 H 0.13 0.77 6.35 -2.91 -0.02 0.75 16 50 H 0.15 -0.25 8.06 -2.91 -0.02 -0.27 16 51 H 0.15 -0.24 8.06 -2.91 -0.02 -0.27 16 52 H 0.14 0.35 8.06 -2.91 -0.02 0.33 16 53 H 0.11 1.46 8.06 -2.91 -0.02 1.44 16 Total: 0.00 -37.20 458.31 -2.13 -39.33 By element: Atomic # 1 Polarization: -16.19 SS G_CDS: -1.08 Total: -17.27 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 4.80 Total: -0.31 kcal Atomic # 7 Polarization: -6.26 SS G_CDS: -3.37 Total: -9.62 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -3.91 Total: -12.12 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: 2.11 Total: 1.01 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -0.69 Total: -1.02 kcal Total: -37.20 -2.13 -39.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_12622748.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.476 kcal (2) G-P(sol) polarization free energy of solvation -37.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds