Wall clock time and date at job start Sat Mar 6 2021 23:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39283 * 121.03106 * 2 1 4 4 C 1.46493 * 134.20057 * 359.95049 * 3 2 1 5 5 C 1.50697 * 126.60126 * 0.02562 * 4 3 2 6 6 O 1.42899 * 109.47399 * 285.00237 * 5 4 3 7 7 Si 1.86298 * 109.47567 * 164.99934 * 5 4 3 8 8 C 1.34182 * 106.80519 * 180.02562 * 4 3 2 9 9 N 1.36950 * 109.94935 * 0.02562 * 8 4 3 10 10 C 1.37159 * 110.11552 * 359.97438 * 9 8 4 11 11 N 1.32810 * 132.96414 * 180.02562 * 10 9 8 12 12 C 1.31315 * 121.88801 * 179.73835 * 11 10 9 13 13 C 1.39754 * 121.03416 * 179.97438 * 2 1 3 14 14 C 1.47670 * 120.44875 * 0.02562 * 13 2 1 15 15 O 1.21573 * 120.00357 * 354.23658 * 14 13 2 16 16 N 1.34782 * 119.99353 * 174.22798 * 14 13 2 17 17 C 1.46504 * 119.99628 * 184.90540 * 16 14 13 18 18 C 1.50696 * 112.84690 * 54.67693 * 17 16 14 19 19 C 1.38245 * 119.99153 * 214.60479 * 18 17 16 20 20 C 1.38211 * 120.01171 * 179.76963 * 19 18 17 21 21 C 1.38330 * 119.98974 * 0.51068 * 20 19 18 22 22 Br 1.89105 * 120.00829 * 179.76802 * 21 20 19 23 23 C 1.38317 * 119.97838 * 359.74838 * 21 20 19 24 24 C 1.38221 * 119.99305 * 359.97438 * 23 21 20 25 25 C 1.54052 * 113.68975 * 283.40441 * 17 16 14 26 26 C 1.53780 * 86.98495 * 270.87550 * 25 17 16 27 27 H 1.09000 * 113.61142 * 219.98645 * 26 25 17 28 28 O 1.42896 * 113.61584 * 89.16124 * 26 25 17 29 29 C 1.53774 * 113.61212 * 185.87427 * 17 16 14 30 30 H 1.09001 * 109.47181 * 263.20025 * 1 2 3 31 31 H 1.09003 * 109.47036 * 23.20154 * 1 2 3 32 32 H 1.09001 * 109.46851 * 143.19905 * 1 2 3 33 33 H 1.09010 * 109.47123 * 44.99900 * 5 4 3 34 34 H 0.96701 * 113.99873 * 300.00074 * 6 5 4 35 35 H 1.48496 * 110.00208 * 58.68067 * 7 5 4 36 36 H 1.48503 * 110.00465 * 180.02562 * 7 5 4 37 37 H 1.07997 * 125.02840 * 180.02562 * 8 4 3 38 38 H 0.96999 * 124.94320 * 180.02562 * 9 8 4 39 39 H 1.08000 * 119.31654 * 180.27091 * 12 11 10 40 40 H 0.96998 * 120.00404 * 4.91357 * 16 14 13 41 41 H 1.07997 * 119.99307 * 0.03067 * 19 18 17 42 42 H 1.08003 * 120.00885 * 180.28425 * 20 19 18 43 43 H 1.08008 * 120.00589 * 180.02562 * 23 21 20 44 44 H 1.08001 * 119.99756 * 180.02562 * 24 23 21 45 45 H 1.08999 * 113.61158 * 156.36901 * 25 17 16 46 46 H 1.09004 * 113.69629 * 25.39352 * 25 17 16 47 47 H 0.96704 * 114.00002 * 80.86426 * 28 26 25 48 48 H 1.08998 * 113.61807 * 334.65093 * 29 17 16 49 49 H 1.09006 * 113.68781 * 203.75872 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8516 2.6100 -0.0009 5 6 0.4527 3.1705 -0.0017 6 8 -0.1188 3.0232 -1.3031 7 14 0.5069 4.9766 0.4520 8 6 2.9948 3.3126 -0.0009 9 7 4.0669 2.4605 -0.0007 10 6 3.6348 1.1587 0.0001 11 7 4.2721 -0.0065 0.0010 12 6 3.6267 -1.1501 0.0067 13 6 2.2275 -1.1975 0.0005 14 6 1.5225 -2.4950 0.0005 15 8 0.3118 -2.5291 0.1058 16 7 2.2213 -3.6416 -0.1163 17 6 1.5164 -4.9213 -0.2245 18 6 0.5141 -4.9439 -1.3496 19 6 -0.6643 -5.6533 -1.2112 20 6 -1.5860 -5.6704 -2.2410 21 6 -1.3244 -4.9862 -3.4145 22 35 -2.5821 -5.0147 -4.8264 23 6 -0.1428 -4.2810 -3.5546 24 6 0.7758 -4.2597 -2.5220 25 6 0.9524 -5.4324 1.1148 26 6 2.3050 -6.1334 1.3239 27 1 2.2182 -7.1286 1.7601 28 8 3.2752 -5.3198 1.9862 29 6 2.4506 -6.1426 -0.2070 30 1 -0.3633 -0.1217 1.0204 31 1 -0.3633 0.9446 -0.4049 32 1 -0.3633 -0.8229 -0.6156 33 1 -0.1551 2.6314 0.7252 34 1 0.3712 3.4782 -2.0016 35 1 1.3584 5.7173 -0.5131 36 1 -0.8667 5.5410 0.4554 37 1 3.0598 4.3906 -0.0011 38 1 4.9965 2.7373 -0.0003 39 1 4.1869 -2.0734 0.0117 40 1 3.1910 -3.6195 -0.1287 41 1 -0.8667 -6.1907 -0.2966 42 1 -2.5087 -6.2209 -2.1311 43 1 0.0617 -3.7463 -4.4705 44 1 1.6982 -3.7087 -2.6312 45 1 0.1160 -6.1221 1.0016 46 1 0.7546 -4.6407 1.8375 47 1 3.1743 -5.2914 2.9476 48 1 3.4616 -5.9239 -0.5508 49 1 2.0243 -7.0269 -0.6809 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_12890568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:43:14 Heat of formation + Delta-G solvation = 36.344533 kcal Electronic energy + Delta-G solvation = -37986.316517 eV Core-core repulsion = 33121.453625 eV Total energy + Delta-G solvation = -4864.862892 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 458.067 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.87985 -42.08537 -40.22852 -39.43834 -38.62692 -37.85145 -36.27369 -35.05461 -34.18057 -33.15393 -32.09522 -31.92143 -30.95091 -30.24029 -28.91119 -27.00493 -26.56794 -25.68614 -24.58422 -23.99322 -23.68379 -22.58299 -21.77992 -20.68724 -20.33646 -19.29779 -18.85846 -18.49974 -17.92272 -17.70585 -17.49026 -17.04231 -16.69850 -16.51813 -16.28359 -16.05863 -15.91079 -15.70210 -15.50102 -15.29480 -15.25321 -15.03021 -14.68171 -14.50560 -14.26724 -14.10724 -14.04734 -13.74982 -13.62985 -13.56112 -13.41916 -13.21005 -13.15639 -13.10905 -12.51378 -12.45005 -12.24573 -12.20992 -11.81976 -11.64717 -11.48958 -11.32260 -11.18933 -11.15071 -10.78628 -10.55325 -10.27632 -10.09187 -10.05199 -9.64486 -9.52400 -9.13494 -4.84739 -0.33515 -0.08457 0.01634 0.28361 0.60191 1.34661 1.41575 1.61941 1.67822 1.83279 1.99874 2.04296 2.53616 2.76354 3.13095 3.30159 3.43341 3.49125 3.53866 3.55853 3.58962 3.64107 3.68329 3.71357 3.87635 3.88614 3.90172 4.13689 4.25235 4.26678 4.29853 4.40128 4.43005 4.50819 4.60480 4.60851 4.68129 4.72075 4.77398 4.82314 4.86583 4.91121 4.98877 5.03781 5.04719 5.14445 5.18753 5.19950 5.27066 5.35210 5.40288 5.66384 5.73388 5.77045 6.21352 6.50696 6.58332 6.82875 6.88672 7.22653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.064 3.936 3 C -0.165 4.165 4 C -0.197 4.197 5 C -0.059 4.059 6 O -0.550 6.550 7 Si 0.780 3.220 8 C 0.091 3.909 9 N -0.560 5.560 10 C 0.289 3.711 11 N -0.516 5.516 12 C 0.180 3.820 13 C -0.238 4.238 14 C 0.574 3.426 15 O -0.548 6.548 16 N -0.687 5.687 17 C 0.191 3.809 18 C -0.051 4.051 19 C -0.107 4.107 20 C -0.094 4.094 21 C -0.105 4.105 22 Br -0.059 7.059 23 C -0.100 4.100 24 C -0.108 4.108 25 C -0.173 4.173 26 C 0.088 3.912 27 H 0.093 0.907 28 O -0.563 6.563 29 C -0.119 4.119 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.385 0.615 35 H -0.258 1.258 36 H -0.308 1.308 37 H 0.221 0.779 38 H 0.438 0.562 39 H 0.188 0.812 40 H 0.413 0.587 41 H 0.155 0.845 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.114 0.886 46 H 0.063 0.937 47 H 0.397 0.603 48 H 0.091 0.909 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 0.603 4.577 7.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.055 3.945 3 C -0.172 4.172 4 C -0.204 4.204 5 C -0.167 4.167 6 O -0.358 6.358 7 Si 0.683 3.317 8 C -0.036 4.036 9 N -0.167 5.167 10 C 0.055 3.945 11 N -0.229 5.229 12 C 0.011 3.989 13 C -0.245 4.245 14 C 0.362 3.638 15 O -0.426 6.426 16 N -0.339 5.339 17 C 0.104 3.896 18 C -0.053 4.053 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.184 4.184 22 Br 0.026 6.974 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.212 4.212 26 C 0.029 3.971 27 H 0.111 0.889 28 O -0.371 6.371 29 C -0.156 4.156 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.234 0.766 35 H -0.183 1.183 36 H -0.236 1.236 37 H 0.237 0.763 38 H 0.279 0.721 39 H 0.204 0.796 40 H 0.251 0.749 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.132 0.868 46 H 0.082 0.918 47 H 0.247 0.753 48 H 0.110 0.890 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.564 1.282 3.570 6.734 hybrid contribution -0.188 -0.167 -0.564 0.618 sum 5.375 1.115 3.006 6.259 Atomic orbital electron populations 1.21048 0.89531 1.03800 1.03024 1.20017 0.96891 0.90131 0.87457 1.19753 0.93245 0.94396 1.09846 1.20699 0.96080 0.90257 1.13356 1.24749 0.90597 1.13854 0.87514 1.86589 1.55160 1.76643 1.17453 0.94085 0.79237 0.70062 0.88336 1.22327 0.83991 0.97196 1.00106 1.41602 1.10586 1.01724 1.62776 1.18760 0.89502 0.86810 0.99442 1.66500 1.40892 0.96471 1.19060 1.22889 0.89815 0.95103 0.91047 1.20525 0.95294 0.93510 1.15185 1.17887 0.86551 0.83592 0.75765 1.90762 1.14666 1.87260 1.49959 1.45370 1.10272 1.03918 1.74355 1.20058 0.92331 0.84273 0.92945 1.19979 0.95205 0.95845 0.94268 1.21288 0.92450 0.99598 0.99196 1.21310 1.00412 0.98093 0.91590 1.21921 0.96101 1.05174 0.95221 1.96732 1.56646 1.98266 1.45718 1.21196 0.92628 0.98150 1.00001 1.20998 0.99496 0.99312 0.92935 1.24267 0.99513 1.01126 0.96277 1.22667 0.87076 0.93940 0.93447 0.88895 1.86362 1.53636 1.71249 1.25819 1.23456 1.00253 0.96598 0.95340 0.90574 0.90189 0.90393 0.87385 0.76585 1.18322 1.23626 0.76315 0.72074 0.79573 0.74880 0.82787 0.83799 0.84940 0.85425 0.86837 0.91779 0.75325 0.89002 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.46 71.24 0.60 -0.51 16 2 C 0.06 0.53 5.98 -19.25 -0.12 0.42 16 3 C -0.17 -1.01 6.16 -20.19 -0.12 -1.14 16 4 C -0.20 -0.09 5.57 -18.64 -0.10 -0.19 16 5 C -0.06 0.01 1.87 71.23 0.13 0.14 16 6 O -0.55 -1.83 11.68 -148.98 -1.74 -3.57 16 7 Si 0.78 -3.73 30.83 68.60 2.11 -1.61 16 8 C 0.09 -0.47 10.44 82.97 0.87 0.40 16 9 N -0.56 1.54 6.04 -192.25 -1.16 0.38 16 10 C 0.29 1.36 8.42 134.03 1.13 2.49 16 11 N -0.52 -2.92 10.37 -191.75 -1.99 -4.91 16 12 C 0.18 0.56 10.68 85.20 0.91 1.47 16 13 C -0.24 -1.47 5.89 -19.99 -0.12 -1.59 16 14 C 0.57 3.54 6.92 86.73 0.60 4.14 16 15 O -0.55 -6.65 12.49 -3.95 -0.05 -6.70 16 16 N -0.69 -0.07 4.07 -426.50 -1.74 -1.80 16 17 C 0.19 -0.18 0.89 3.47 0.00 -0.18 16 18 C -0.05 -0.14 3.97 -19.86 -0.08 -0.22 16 19 C -0.11 -0.21 9.28 22.26 0.21 -0.01 16 20 C -0.09 -0.38 9.79 22.29 0.22 -0.16 16 21 C -0.10 -0.68 6.22 22.31 0.14 -0.54 16 22 Br -0.06 -0.38 33.70 -20.37 -0.69 -1.06 16 23 C -0.10 -0.62 9.79 22.28 0.22 -0.40 16 24 C -0.11 -0.51 8.88 22.27 0.20 -0.32 16 25 C -0.17 0.42 6.80 31.21 0.21 0.63 16 26 C 0.09 -0.52 5.27 31.12 0.16 -0.35 16 27 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 28 O -0.56 2.56 13.08 -148.98 -1.95 0.61 16 29 C -0.12 0.66 7.16 31.12 0.22 0.88 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.73 4.76 -2.39 -0.01 0.72 16 32 H 0.08 1.04 5.99 -2.39 -0.01 1.03 16 33 H 0.11 0.12 7.12 -2.38 -0.02 0.10 16 34 H 0.38 -1.16 8.70 -74.06 -0.64 -1.80 16 35 H -0.26 1.18 7.00 99.48 0.70 1.88 16 36 H -0.31 -1.36 7.11 99.48 0.71 -0.66 16 37 H 0.22 -2.89 6.28 -2.91 -0.02 -2.91 16 38 H 0.44 -3.59 8.96 -92.71 -0.83 -4.42 16 39 H 0.19 -0.67 6.41 -2.91 -0.02 -0.69 16 40 H 0.41 -1.48 6.68 -92.71 -0.62 -2.10 16 41 H 0.15 -0.45 5.68 -2.91 -0.02 -0.47 16 42 H 0.14 0.15 8.06 -2.91 -0.02 0.12 16 43 H 0.13 0.61 8.06 -2.91 -0.02 0.58 16 44 H 0.13 0.41 7.70 -2.91 -0.02 0.39 16 45 H 0.11 -0.58 5.67 -2.39 -0.01 -0.59 16 46 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 47 H 0.40 -4.06 9.12 -74.05 -0.68 -4.74 16 48 H 0.09 -0.54 8.10 -2.39 -0.02 -0.56 16 49 H 0.13 -0.99 8.10 -2.38 -0.02 -1.01 16 Total: 0.00 -25.30 414.60 -3.55 -28.86 By element: Atomic # 1 Polarization: -13.52 SS G_CDS: -1.64 Total: -15.16 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 5.28 Total: 4.97 kcal Atomic # 7 Polarization: -1.45 SS G_CDS: -4.88 Total: -6.33 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -3.74 Total: -9.66 kcal Atomic # 14 Polarization: -3.73 SS G_CDS: 2.11 Total: -1.61 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -0.69 Total: -1.06 kcal Total: -25.30 -3.55 -28.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_12890568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.202 kcal (2) G-P(sol) polarization free energy of solvation -25.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds