Wall clock time and date at job start Sat Mar 6 2021 23:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.47272 * 2 1 4 4 C 1.50706 * 109.46918 * 120.00099 * 2 1 3 5 5 C 1.38333 * 119.87024 * 244.72300 * 4 2 1 6 6 C 1.37996 * 120.12868 * 180.28032 * 5 4 2 7 7 C 1.39402 * 119.87109 * 359.97438 * 6 5 4 8 8 C 1.48278 * 120.13005 * 179.97438 * 7 6 5 9 9 C 1.39502 * 119.97548 * 179.75172 * 8 7 6 10 10 C 1.37670 * 120.02257 * 179.72170 * 9 8 7 11 11 C 1.39710 * 119.97479 * 0.53215 * 10 9 8 12 12 C 1.47712 * 120.02702 * 179.76431 * 11 10 9 13 13 O 1.21572 * 120.00321 * 179.97438 * 12 11 10 14 14 N 1.34777 * 119.99699 * 359.97438 * 12 11 10 15 15 C 1.46500 * 119.99787 * 174.90392 * 14 12 11 16 16 C 1.50705 * 112.85149 * 295.31128 * 15 14 12 17 17 C 1.38235 * 119.98823 * 163.98323 * 16 15 14 18 18 C 1.38217 * 120.00809 * 179.76457 * 17 16 15 19 19 C 1.38329 * 119.98780 * 0.51195 * 18 17 16 20 20 Br 1.89101 * 120.01228 * 179.76553 * 19 18 17 21 21 C 1.38328 * 119.98189 * 359.74277 * 19 18 17 22 22 C 1.38223 * 119.98671 * 0.02562 * 21 19 18 23 23 C 1.53789 * 113.61264 * 164.11439 * 15 14 12 24 24 C 1.54055 * 86.98546 * 270.83831 * 23 15 14 25 25 H 1.09004 * 113.61716 * 220.02397 * 24 23 15 26 26 O 1.42893 * 113.61188 * 89.11615 * 24 23 15 27 27 C 1.53781 * 87.07555 * 334.56686 * 24 23 15 28 28 C 1.39716 * 119.95076 * 359.74060 * 11 10 9 29 29 C 1.37665 * 119.97460 * 0.02562 * 28 11 10 30 30 C 1.39410 * 119.74594 * 0.02562 * 7 6 5 31 31 C 1.38006 * 119.86699 * 359.97438 * 30 7 6 32 32 H 0.96703 * 113.99677 * 299.99867 * 1 2 3 33 33 H 1.09001 * 109.46892 * 240.00096 * 2 1 3 34 34 H 1.48505 * 110.00024 * 178.67940 * 3 2 1 35 35 H 1.48498 * 110.00080 * 300.00074 * 3 2 1 36 36 H 1.08006 * 119.93678 * 0.27591 * 5 4 2 37 37 H 1.08003 * 120.06838 * 180.02562 * 6 5 4 38 38 H 1.08000 * 119.98896 * 0.02562 * 9 8 7 39 39 H 1.07993 * 120.01240 * 180.29368 * 10 9 8 40 40 H 0.96998 * 120.00158 * 354.90313 * 14 12 11 41 41 H 1.07998 * 119.99889 * 0.02562 * 17 16 15 42 42 H 1.08000 * 120.00869 * 180.27711 * 18 17 16 43 43 H 1.07998 * 120.00758 * 180.02562 * 21 19 18 44 44 H 1.08001 * 119.99362 * 180.02562 * 22 21 19 45 45 H 1.09000 * 113.61425 * 25.43390 * 23 15 14 46 46 H 1.08998 * 113.61035 * 156.33818 * 23 15 14 47 47 H 0.96701 * 113.99944 * 82.50821 * 26 24 23 48 48 H 1.08995 * 113.61702 * 270.87855 * 27 24 23 49 49 H 1.09004 * 113.61242 * 139.97755 * 27 24 23 50 50 H 1.07992 * 120.01324 * 179.97438 * 28 11 10 51 51 H 1.08000 * 119.98983 * 180.02562 * 29 28 11 52 52 H 1.07998 * 120.06269 * 180.02562 * 30 7 6 53 53 H 1.08000 * 119.93439 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.6439 -0.0105 2.1876 6 6 3.1113 -0.6570 3.3136 7 6 2.8637 -2.0180 3.4858 8 6 3.3638 -2.7185 4.6932 9 6 3.1097 -4.0794 4.8648 10 6 3.5784 -4.7321 5.9827 11 6 4.2992 -4.0285 6.9508 12 6 4.7982 -4.7265 8.1532 13 8 5.4258 -4.1139 8.9952 14 7 4.5577 -6.0425 8.3169 15 6 5.1461 -6.7591 9.4512 16 6 6.6510 -6.8145 9.3914 17 6 7.3753 -7.1501 10.5199 18 6 8.7552 -7.2059 10.4644 19 6 9.4119 -6.9155 9.2820 20 35 11.3001 -6.9851 9.2069 21 6 8.6868 -6.5746 8.1543 22 6 7.3066 -6.5238 8.2097 23 6 4.4898 -8.1225 9.7259 24 6 3.5047 -7.3722 10.6423 25 1 3.2680 -7.9087 11.5612 26 8 2.3425 -6.8930 9.9629 27 6 4.6000 -6.3069 10.8158 28 6 4.5482 -2.6643 6.7807 29 6 4.0827 -2.0148 5.6597 30 6 2.1451 -2.7182 2.5180 31 6 1.6826 -2.0611 1.3960 32 1 -0.3933 0.4417 0.7651 33 1 1.7923 -0.5138 -0.8900 34 1 3.5347 1.7702 0.0322 35 1 1.5616 2.4679 -1.2085 36 1 2.8348 1.0440 2.0532 37 1 3.6672 -0.1095 4.0604 38 1 2.5493 -4.6223 4.1181 39 1 3.3857 -5.7867 6.1131 40 1 3.9951 -6.5151 7.6837 41 1 6.8628 -7.3729 11.4441 42 1 9.3210 -7.4724 11.3449 43 1 9.1990 -6.3482 7.2309 44 1 6.7404 -6.2580 7.3292 45 1 4.0203 -8.5659 8.8478 46 1 5.1372 -8.8193 10.2583 47 1 1.6500 -7.5586 9.8507 48 1 5.2774 -6.5083 11.6456 49 1 4.2194 -5.2855 10.8171 50 1 5.1049 -2.1194 7.5286 51 1 4.2753 -0.9603 5.5277 52 1 1.9500 -3.7726 2.6464 53 1 1.1261 -2.6026 0.6453 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_13158362.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:43:21 Heat of formation + Delta-G solvation = 15.401408 kcal Electronic energy + Delta-G solvation = -38621.373264 eV Core-core repulsion = 33630.001751 eV Total energy + Delta-G solvation = -4991.371513 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 480.077 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -42.25958 -41.10604 -40.25438 -39.51178 -38.93294 -37.50248 -36.27960 -34.54299 -33.69100 -33.17875 -32.55724 -32.01596 -31.56803 -30.78894 -30.26417 -27.18235 -26.94189 -25.67407 -24.65773 -24.37449 -23.83797 -22.67278 -22.57390 -22.16239 -21.31904 -20.28971 -19.32486 -18.67457 -18.44002 -17.80137 -17.71128 -17.18415 -16.86643 -16.46022 -16.36497 -16.19591 -16.04690 -15.92443 -15.80722 -15.42178 -15.33300 -15.15020 -15.04513 -14.90901 -14.75035 -14.59220 -14.39169 -14.27026 -14.22681 -14.04670 -13.73735 -13.57091 -13.36927 -13.15897 -13.03373 -12.73805 -12.59723 -12.54218 -12.40885 -12.26013 -12.11557 -11.94795 -11.70886 -11.60857 -11.45570 -11.32857 -10.95972 -10.91216 -10.75550 -10.41598 -10.10990 -10.07851 -10.06719 -9.96141 -9.57159 -9.07567 -5.01705 -0.68537 -0.01463 0.25310 0.34492 0.40027 0.50755 0.58846 1.30031 1.61891 1.82010 1.95109 1.98061 2.48140 2.61118 3.00975 3.13343 3.38885 3.44807 3.50674 3.54496 3.62516 3.64485 3.68085 3.72692 3.76667 3.86398 3.87180 3.91913 4.01188 4.05818 4.24565 4.26022 4.27997 4.36346 4.37309 4.40323 4.47323 4.59077 4.64197 4.67355 4.68155 4.82154 4.84382 4.87294 4.89441 4.91142 4.98254 5.02286 5.07987 5.12174 5.14505 5.15392 5.20232 5.27072 5.31048 5.41062 5.49532 5.62438 5.65054 5.73692 5.79532 5.92783 6.47287 6.75361 6.94149 7.17673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.073 4.073 3 Si 0.771 3.229 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.107 4.107 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.120 4.120 10 C -0.074 4.074 11 C -0.150 4.150 12 C 0.561 3.439 13 O -0.566 6.566 14 N -0.684 5.684 15 C 0.187 3.813 16 C -0.059 4.059 17 C -0.108 4.108 18 C -0.093 4.093 19 C -0.106 4.106 20 Br -0.057 7.057 21 C -0.099 4.099 22 C -0.110 4.110 23 C -0.146 4.146 24 C 0.087 3.913 25 H 0.095 0.905 26 O -0.565 6.565 27 C -0.140 4.140 28 C -0.071 4.071 29 C -0.122 4.122 30 C -0.108 4.108 31 C -0.102 4.102 32 H 0.395 0.605 33 H 0.107 0.893 34 H -0.287 1.287 35 H -0.301 1.301 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.415 0.585 41 H 0.158 0.842 42 H 0.148 0.852 43 H 0.134 0.866 44 H 0.125 0.875 45 H 0.099 0.901 46 H 0.122 0.878 47 H 0.398 0.602 48 H 0.118 0.882 49 H 0.054 0.946 50 H 0.125 0.875 51 H 0.148 0.852 52 H 0.146 0.854 53 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 -4.542 1.067 7.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.183 4.183 3 Si 0.678 3.322 4 C -0.120 4.120 5 C -0.135 4.135 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.137 4.137 10 C -0.093 4.093 11 C -0.153 4.153 12 C 0.349 3.651 13 O -0.445 6.445 14 N -0.336 5.336 15 C 0.100 3.900 16 C -0.061 4.061 17 C -0.127 4.127 18 C -0.112 4.112 19 C -0.185 4.185 20 Br 0.028 6.972 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.184 4.184 24 C 0.028 3.972 25 H 0.113 0.887 26 O -0.373 6.373 27 C -0.178 4.178 28 C -0.090 4.090 29 C -0.140 4.140 30 C -0.125 4.125 31 C -0.120 4.120 32 H 0.245 0.755 33 H 0.124 0.876 34 H -0.214 1.214 35 H -0.229 1.229 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.173 0.827 39 H 0.172 0.828 40 H 0.253 0.747 41 H 0.175 0.825 42 H 0.165 0.835 43 H 0.152 0.848 44 H 0.143 0.857 45 H 0.117 0.883 46 H 0.140 0.860 47 H 0.249 0.751 48 H 0.136 0.864 49 H 0.073 0.927 50 H 0.143 0.857 51 H 0.165 0.835 52 H 0.163 0.837 53 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.555 -3.338 0.651 4.920 hybrid contribution -0.457 -0.853 -0.649 1.166 sum -4.012 -4.191 0.002 5.802 Atomic orbital electron populations 1.86475 1.17147 1.82156 1.50521 1.25153 0.85334 1.10588 0.97238 0.93770 0.77881 0.75648 0.84920 1.20528 0.99370 0.95210 0.96876 1.21134 0.98300 1.00188 0.93928 1.21485 0.99273 0.93707 0.98044 1.18939 0.99146 0.93902 0.93987 1.19131 0.96080 0.93896 0.93188 1.21456 1.00318 0.93547 0.98418 1.21437 0.94711 1.00724 0.92383 1.20025 1.04097 0.95172 0.96052 1.18441 0.78796 0.82118 0.85707 1.90785 1.42079 1.66810 1.44838 1.45302 1.51520 1.08356 1.28450 1.20059 0.87460 0.95114 0.87375 1.20115 0.95316 0.97001 0.93668 1.21210 0.93000 0.99712 0.98755 1.21333 0.95007 0.98213 0.96690 1.21948 0.90378 1.08420 0.97760 1.96743 1.03613 1.97717 1.99086 1.21214 0.94337 0.98625 0.97723 1.21013 0.93542 0.99709 0.98597 1.24077 0.98565 0.93681 1.02069 1.22735 0.85149 0.94272 0.95059 0.88732 1.86488 1.28354 1.42687 1.79805 1.23609 0.97584 0.99851 0.96797 1.21232 0.97064 0.93406 0.97316 1.21377 0.98241 1.01220 0.93146 1.21515 0.96902 1.00978 0.93155 1.21103 0.99011 0.93987 0.97919 0.75470 0.87576 1.21438 1.22903 0.83656 0.83634 0.82747 0.82818 0.74659 0.82460 0.83468 0.84842 0.85696 0.88294 0.85993 0.75106 0.86397 0.92742 0.85684 0.83464 0.83672 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.20 12.83 -148.98 -1.91 -1.71 16 2 C -0.07 0.08 2.80 71.24 0.20 0.28 16 3 Si 0.77 -1.79 29.79 68.60 2.04 0.25 16 4 C -0.12 0.11 5.36 -19.82 -0.11 0.00 16 5 C -0.12 0.27 8.65 22.23 0.19 0.47 16 6 C -0.11 0.18 9.43 22.49 0.21 0.39 16 7 C -0.06 0.02 5.88 -20.04 -0.12 -0.09 16 8 C -0.02 0.00 5.88 -20.00 -0.12 -0.12 16 9 C -0.12 0.32 9.41 22.44 0.21 0.53 16 10 C -0.07 0.18 9.52 22.49 0.21 0.40 16 11 C -0.15 -0.50 5.88 -20.06 -0.12 -0.62 16 12 C 0.56 3.42 6.15 86.75 0.53 3.96 16 13 O -0.57 -8.03 14.83 -3.94 -0.06 -8.08 16 14 N -0.68 0.33 3.79 -426.86 -1.62 -1.28 16 15 C 0.19 -0.20 0.92 3.39 0.00 -0.19 16 16 C -0.06 -0.12 4.69 -19.86 -0.09 -0.22 16 17 C -0.11 -0.04 8.86 22.26 0.20 0.16 16 18 C -0.09 -0.22 9.79 22.29 0.22 0.00 16 19 C -0.11 -0.55 6.22 22.31 0.14 -0.41 16 20 Br -0.06 -0.30 33.70 -20.37 -0.69 -0.98 16 21 C -0.10 -0.52 9.79 22.29 0.22 -0.31 16 22 C -0.11 -0.48 8.80 22.27 0.20 -0.28 16 23 C -0.15 1.14 7.14 31.22 0.22 1.36 16 24 C 0.09 -0.50 5.28 31.21 0.16 -0.33 16 25 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 26 O -0.57 2.29 13.09 -148.98 -1.95 0.34 16 27 C -0.14 -0.03 6.60 31.12 0.21 0.17 16 28 C -0.07 -0.32 9.58 22.49 0.22 -0.10 16 29 C -0.12 -0.12 9.41 22.44 0.21 0.09 16 30 C -0.11 0.17 9.43 22.50 0.21 0.38 16 31 C -0.10 0.05 9.67 22.24 0.21 0.27 16 32 H 0.40 -3.28 8.70 -74.05 -0.64 -3.92 16 33 H 0.11 0.01 7.96 -2.39 -0.02 -0.01 16 34 H -0.29 -0.77 7.11 99.48 0.71 -0.06 16 35 H -0.30 -1.65 7.11 99.48 0.71 -0.94 16 36 H 0.15 -0.94 4.89 -2.91 -0.01 -0.95 16 37 H 0.15 -0.77 6.19 -2.91 -0.02 -0.79 16 38 H 0.16 -1.17 6.19 -2.91 -0.02 -1.19 16 39 H 0.15 -1.35 6.40 -2.91 -0.02 -1.37 16 40 H 0.41 -2.42 6.69 -92.71 -0.62 -3.04 16 41 H 0.16 -0.84 6.38 -2.91 -0.02 -0.86 16 42 H 0.15 -0.13 8.06 -2.91 -0.02 -0.16 16 43 H 0.13 0.49 8.06 -2.91 -0.02 0.46 16 44 H 0.13 0.42 6.74 -2.91 -0.02 0.40 16 45 H 0.10 -1.03 8.09 -2.39 -0.02 -1.05 16 46 H 0.12 -1.24 7.88 -2.39 -0.02 -1.26 16 47 H 0.40 -5.06 9.12 -74.06 -0.68 -5.74 16 48 H 0.12 -0.36 6.09 -2.39 -0.01 -0.37 16 49 H 0.05 0.45 7.30 -2.38 -0.02 0.43 16 50 H 0.13 0.80 7.64 -2.91 -0.02 0.78 16 51 H 0.15 -0.44 6.19 -2.91 -0.02 -0.45 16 52 H 0.15 -0.85 6.19 -2.91 -0.02 -0.87 16 53 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 Total: 0.00 -26.16 448.31 -1.62 -27.78 By element: Atomic # 1 Polarization: -21.21 SS G_CDS: -0.87 Total: -22.08 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 3.43 Total: 5.77 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -1.62 Total: -1.28 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -3.92 Total: -9.46 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: 2.04 Total: 0.25 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -0.69 Total: -0.98 kcal Total: -26.16 -1.62 -27.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_13158362.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.178 kcal (2) G-P(sol) polarization free energy of solvation -26.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds