Wall clock time and date at job start Sat Mar 6 2021 23:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86293 * 109.46932 * 2 1 4 4 C 1.50699 * 109.46932 * 120.00096 * 2 1 3 5 5 C 1.38358 * 120.34678 * 64.72413 * 4 2 1 6 6 C 1.40029 * 118.28481 * 179.73491 * 5 4 2 7 7 C 1.47836 * 120.55966 * 180.28273 * 6 5 4 8 8 O 1.21553 * 119.99886 * 0.23553 * 7 6 5 9 9 N 1.34777 * 119.99748 * 180.23807 * 7 6 5 10 10 C 1.46505 * 119.99761 * 175.03851 * 9 7 6 11 11 C 1.50702 * 112.84952 * 291.21450 * 10 9 7 12 12 C 1.38239 * 119.99013 * 346.59531 * 11 10 9 13 13 C 1.38218 * 120.01045 * 179.76195 * 12 11 10 14 14 C 1.38332 * 119.98739 * 0.52118 * 13 12 11 15 15 Br 1.89098 * 120.00823 * 179.76299 * 14 13 12 16 16 C 1.38323 * 119.97893 * 359.73419 * 14 13 12 17 17 C 1.38221 * 119.99048 * 0.02562 * 16 14 13 18 18 C 1.53779 * 113.61408 * 159.90735 * 10 9 7 19 19 C 1.53782 * 87.08021 * 270.88378 * 18 10 9 20 20 H 1.08998 * 113.69092 * 220.00907 * 19 18 10 21 21 O 1.42902 * 113.61207 * 89.11665 * 19 18 10 22 22 C 1.53781 * 87.08359 * 334.56908 * 19 18 10 23 23 C 1.39531 * 118.88136 * 0.51643 * 6 5 4 24 24 N 1.31698 * 120.56300 * 359.74467 * 23 6 5 25 25 C 1.31923 * 121.88448 * 0.02562 * 24 23 6 26 26 H 0.96695 * 113.99841 * 300.00119 * 1 2 3 27 27 H 1.09001 * 109.46695 * 240.00029 * 2 1 3 28 28 H 1.48500 * 109.99906 * 178.68045 * 3 2 1 29 29 H 1.48504 * 110.00366 * 299.99828 * 3 2 1 30 30 H 1.07998 * 120.85843 * 359.97394 * 5 4 2 31 31 H 0.96998 * 120.00525 * 355.04116 * 9 7 6 32 32 H 1.07998 * 119.99245 * 0.02630 * 12 11 10 33 33 H 1.08003 * 120.00636 * 180.23115 * 13 12 11 34 34 H 1.08002 * 120.00263 * 179.97438 * 16 14 13 35 35 H 1.07999 * 119.99092 * 179.97438 * 17 16 14 36 36 H 1.08996 * 113.61634 * 25.43382 * 18 10 9 37 37 H 1.09005 * 113.61398 * 156.33969 * 18 10 9 38 38 H 0.96700 * 113.99893 * 82.50232 * 21 19 18 39 39 H 1.09003 * 113.60815 * 270.88716 * 22 19 18 40 40 H 1.08995 * 113.61545 * 139.98229 * 22 19 18 41 41 H 1.07999 * 119.71444 * 179.72557 * 23 6 5 42 42 H 1.07997 * 119.46342 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6837 -2.0600 1.4085 6 6 2.1752 -2.6779 2.5649 7 6 1.9452 -4.1187 2.8030 8 8 1.3285 -4.7783 1.9893 9 7 2.4193 -4.7008 3.9223 10 6 2.0994 -6.1010 4.2116 11 6 0.6452 -6.3120 4.5460 12 6 -0.1636 -5.2267 4.8273 13 6 -1.4986 -5.4194 5.1293 14 6 -2.0227 -6.6992 5.1606 15 35 -3.8474 -6.9639 5.5802 16 6 -1.2117 -7.7851 4.8842 17 6 0.1220 -7.5911 4.5775 18 6 3.0651 -6.7597 5.2107 19 6 3.9269 -7.1515 3.9988 20 1 4.3517 -8.1529 4.0688 21 8 4.8940 -6.1623 3.6404 22 6 2.6391 -7.0858 3.1610 23 6 2.8816 -1.9097 3.4912 24 7 3.0869 -0.6263 3.2790 25 6 2.6397 -0.0186 2.1968 26 1 -0.3933 0.4417 0.7650 27 1 1.7923 -0.5138 -0.8900 28 1 3.5346 1.7703 0.0321 29 1 1.5615 2.4679 -1.2085 30 1 1.1289 -2.6232 0.6727 31 1 2.9722 -4.1929 4.5364 32 1 0.2466 -4.2279 4.8069 33 1 -2.1313 -4.5712 5.3454 34 1 -1.6204 -8.7845 4.9090 35 1 0.7553 -8.4390 4.3621 36 1 3.5508 -6.0506 5.8809 37 1 2.6355 -7.6134 5.7351 38 1 5.7062 -6.1985 4.1639 39 1 2.0930 -8.0286 3.1252 40 1 2.7808 -6.6399 2.1766 41 1 3.2629 -2.3716 4.3899 42 1 2.8303 1.0359 2.0627 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_13287814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:44:16 Heat of formation + Delta-G solvation = -2.501269 kcal Electronic energy + Delta-G solvation = -29894.058648 eV Core-core repulsion = 25660.464705 eV Total energy + Delta-G solvation = -4233.593943 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.041 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.39947 -41.48952 -39.82899 -39.29111 -37.94679 -36.31775 -34.53090 -33.78148 -33.18914 -32.77655 -31.94180 -30.33249 -27.30961 -27.01971 -26.50057 -24.95880 -23.91601 -23.81724 -22.50340 -21.70551 -20.38084 -19.32149 -18.70827 -18.20208 -17.99322 -17.71892 -17.54860 -16.89154 -16.47998 -16.40687 -16.09210 -15.98679 -15.79156 -15.39853 -15.32287 -14.76132 -14.65076 -14.55846 -14.38993 -14.35317 -14.25218 -13.75415 -13.54924 -13.29276 -13.07253 -12.73854 -12.59866 -12.43173 -12.27665 -12.19883 -11.71851 -11.60988 -11.32412 -11.17925 -11.08337 -10.96587 -10.59813 -10.58452 -10.34995 -10.11618 -10.07875 -9.57894 -5.04333 -0.58372 -0.05663 -0.02074 0.25115 0.59422 1.20822 1.60819 1.66821 1.84364 1.96066 2.47266 2.61667 3.06518 3.13801 3.35884 3.41997 3.45139 3.51827 3.60620 3.65410 3.67866 3.70928 3.73197 3.86644 3.89871 4.08659 4.24277 4.25182 4.35290 4.39625 4.44845 4.59148 4.67022 4.80382 4.81544 4.83523 4.86388 4.91012 4.97984 5.02052 5.13021 5.15323 5.27515 5.30963 5.58296 5.73285 6.35747 6.62068 6.68423 6.92415 7.06170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.075 4.075 3 Si 0.785 3.215 4 C -0.176 4.176 5 C -0.004 4.004 6 C -0.196 4.196 7 C 0.569 3.431 8 O -0.560 6.560 9 N -0.681 5.681 10 C 0.189 3.811 11 C -0.062 4.062 12 C -0.110 4.110 13 C -0.099 4.099 14 C -0.106 4.106 15 Br -0.057 7.057 16 C -0.093 4.093 17 C -0.107 4.107 18 C -0.145 4.145 19 C 0.086 3.914 20 H 0.094 0.906 21 O -0.566 6.566 22 C -0.141 4.141 23 C 0.148 3.852 24 N -0.491 5.491 25 C 0.131 3.869 26 H 0.397 0.603 27 H 0.109 0.891 28 H -0.276 1.276 29 H -0.294 1.294 30 H 0.132 0.868 31 H 0.416 0.584 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.398 0.602 39 H 0.118 0.882 40 H 0.055 0.945 41 H 0.189 0.811 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 0.584 6.474 8.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.185 4.185 3 Si 0.689 3.311 4 C -0.179 4.179 5 C -0.030 4.030 6 C -0.201 4.201 7 C 0.356 3.644 8 O -0.439 6.439 9 N -0.333 5.333 10 C 0.101 3.899 11 C -0.064 4.064 12 C -0.129 4.129 13 C -0.118 4.118 14 C -0.185 4.185 15 Br 0.028 6.972 16 C -0.113 4.113 17 C -0.126 4.126 18 C -0.182 4.182 19 C 0.026 3.974 20 H 0.112 0.888 21 O -0.375 6.375 22 C -0.179 4.179 23 C -0.011 4.011 24 N -0.198 5.198 25 C -0.025 4.025 26 H 0.247 0.753 27 H 0.126 0.874 28 H -0.203 1.203 29 H -0.222 1.222 30 H 0.150 0.850 31 H 0.255 0.745 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.119 0.881 37 H 0.141 0.859 38 H 0.249 0.751 39 H 0.136 0.864 40 H 0.074 0.926 41 H 0.206 0.794 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.391 0.936 5.320 6.961 hybrid contribution 0.237 -0.941 -0.723 1.210 sum 4.628 -0.005 4.597 6.523 Atomic orbital electron populations 1.86515 1.17008 1.82203 1.50498 1.25273 0.85492 1.11650 0.96060 0.93778 0.78022 0.73754 0.85501 1.21445 1.02049 0.94815 0.99567 1.21616 0.92351 0.94041 0.95022 1.21029 1.05574 0.94673 0.98804 1.18114 0.78334 0.86525 0.81447 1.90805 1.42230 1.65144 1.45737 1.45245 1.52789 1.11723 1.23530 1.20056 0.89812 0.81625 0.98370 1.20124 0.95430 0.93684 0.97117 1.21027 0.92986 0.99453 0.99435 1.21235 0.95958 0.95805 0.98832 1.21965 0.91533 0.96783 1.08248 1.96750 1.09983 1.97387 1.93036 1.21336 0.93680 0.98562 0.97685 1.21196 0.94844 0.97164 0.99415 1.24030 0.95616 1.02060 0.96528 1.22701 0.88579 0.92318 0.93760 0.88813 1.86484 1.30732 1.56223 1.64021 1.23605 0.96068 0.99905 0.98284 1.23406 0.90943 0.89113 0.97595 1.67798 1.19839 1.10888 1.21322 1.23220 0.90622 1.00828 0.87829 0.75329 0.87370 1.20292 1.22178 0.84994 0.74503 0.85468 0.84683 0.83512 0.82465 0.88071 0.85856 0.75106 0.86426 0.92633 0.79385 0.79726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.25 12.84 -148.98 -1.91 -2.17 16 2 C -0.08 0.07 2.82 71.24 0.20 0.27 16 3 Si 0.79 -3.29 29.83 68.60 2.05 -1.24 16 4 C -0.18 -0.03 5.35 -19.81 -0.11 -0.13 16 5 C 0.00 -0.02 9.38 22.73 0.21 0.20 16 6 C -0.20 -0.49 5.89 -19.99 -0.12 -0.61 16 7 C 0.57 2.79 6.27 86.78 0.54 3.33 16 8 O -0.56 -7.44 14.84 -3.88 -0.06 -7.50 16 9 N -0.68 1.26 3.70 -426.76 -1.58 -0.32 16 10 C 0.19 -0.40 0.94 3.38 0.00 -0.39 16 11 C -0.06 -0.06 4.89 -19.86 -0.10 -0.15 16 12 C -0.11 -0.32 8.98 22.27 0.20 -0.12 16 13 C -0.10 -0.40 9.79 22.29 0.22 -0.18 16 14 C -0.11 -0.46 6.22 22.31 0.14 -0.32 16 15 Br -0.06 -0.26 33.70 -20.37 -0.69 -0.95 16 16 C -0.09 -0.15 9.79 22.29 0.22 0.07 16 17 C -0.11 0.07 8.71 22.27 0.19 0.26 16 18 C -0.14 1.26 7.12 31.12 0.22 1.48 16 19 C 0.09 -0.52 5.28 31.12 0.16 -0.35 16 20 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 21 O -0.57 2.36 13.09 -148.98 -1.95 0.41 16 22 C -0.14 0.03 6.56 31.12 0.20 0.23 16 23 C 0.15 -0.24 10.71 85.02 0.91 0.67 16 24 N -0.49 -0.15 10.35 -194.75 -2.01 -2.17 16 25 C 0.13 -0.22 9.84 84.71 0.83 0.61 16 26 H 0.40 -3.20 8.70 -74.06 -0.64 -3.85 16 27 H 0.11 0.09 7.96 -2.39 -0.02 0.07 16 28 H -0.28 0.03 7.11 99.48 0.71 0.74 16 29 H -0.29 -1.05 7.11 99.48 0.71 -0.34 16 30 H 0.13 1.01 7.74 -2.91 -0.02 0.98 16 31 H 0.42 -3.15 6.77 -92.71 -0.63 -3.78 16 32 H 0.13 0.18 6.73 -2.91 -0.02 0.16 16 33 H 0.14 0.31 8.06 -2.91 -0.02 0.29 16 34 H 0.15 -0.23 8.06 -2.91 -0.02 -0.25 16 35 H 0.16 -0.99 6.55 -2.91 -0.02 -1.01 16 36 H 0.10 -1.15 8.10 -2.39 -0.02 -1.17 16 37 H 0.12 -1.37 7.79 -2.38 -0.02 -1.39 16 38 H 0.40 -5.03 9.12 -74.06 -0.68 -5.71 16 39 H 0.12 -0.39 6.22 -2.39 -0.01 -0.41 16 40 H 0.05 0.45 6.95 -2.39 -0.02 0.43 16 41 H 0.19 -1.64 6.43 -2.91 -0.02 -1.66 16 42 H 0.19 -1.35 4.91 -2.91 -0.01 -1.37 16 Total: 0.00 -25.24 369.31 -2.99 -28.23 By element: Atomic # 1 Polarization: -18.38 SS G_CDS: -0.78 Total: -19.16 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 3.94 Total: 4.86 kcal Atomic # 7 Polarization: 1.11 SS G_CDS: -3.59 Total: -2.49 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -3.92 Total: -9.25 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: 2.05 Total: -1.24 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -0.69 Total: -0.95 kcal Total: -25.24 -2.99 -28.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_13287814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.733 kcal (2) G-P(sol) polarization free energy of solvation -25.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds