Wall clock time and date at job start Sat Mar 6 2021 23:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36422 * 125.79699 * 2 1 4 4 C 1.47375 * 127.19210 * 0.06576 * 3 2 1 5 5 O 1.21610 * 120.00328 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99848 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99991 * 175.05095 * 6 4 3 8 8 C 1.50695 * 112.85044 * 291.22102 * 7 6 4 9 9 C 1.38246 * 119.99140 * 346.62396 * 8 7 6 10 10 C 1.38212 * 120.01351 * 179.76440 * 9 8 7 11 11 C 1.38331 * 119.98953 * 0.51400 * 10 9 8 12 12 Br 1.89097 * 120.01022 * 179.76352 * 11 10 9 13 13 C 1.38324 * 119.97827 * 359.73809 * 11 10 9 14 14 C 1.38222 * 119.98950 * 0.02562 * 13 11 10 15 15 C 1.53784 * 113.61685 * 159.91571 * 7 6 4 16 16 C 1.53782 * 87.07986 * 270.88350 * 15 7 6 17 17 H 1.09002 * 113.69149 * 220.00909 * 16 15 7 18 18 O 1.42894 * 113.61624 * 89.11281 * 16 15 7 19 19 C 1.53781 * 113.61719 * 62.41475 * 7 6 4 20 20 C 1.47023 * 105.61373 * 180.02562 * 3 2 1 21 21 C 1.34179 * 105.95260 * 359.97438 * 20 3 2 22 22 C 1.50699 * 125.43562 * 179.97438 * 21 20 3 23 23 O 1.42902 * 109.46981 * 64.99987 * 22 21 20 24 24 Si 1.86296 * 109.47280 * 184.99878 * 22 21 20 25 25 O 1.33644 * 125.80574 * 180.30116 * 2 1 3 26 26 H 1.08995 * 109.47028 * 90.00629 * 1 2 3 27 27 H 1.08996 * 109.46947 * 210.00120 * 1 2 3 28 28 H 1.08997 * 109.47801 * 330.00340 * 1 2 3 29 29 H 0.96996 * 119.99939 * 355.04022 * 6 4 3 30 30 H 1.08007 * 119.98968 * 0.02562 * 9 8 7 31 31 H 1.08007 * 120.00641 * 180.23360 * 10 9 8 32 32 H 1.08001 * 120.00395 * 179.97438 * 13 11 10 33 33 H 1.08003 * 119.99127 * 179.97438 * 14 13 11 34 34 H 1.08996 * 113.61363 * 25.42732 * 15 7 6 35 35 H 1.08995 * 113.61447 * 156.33794 * 15 7 6 36 36 H 0.96701 * 114.00030 * 82.50751 * 18 16 15 37 37 H 1.08998 * 113.62007 * 203.66674 * 19 7 6 38 38 H 1.09005 * 113.61653 * 334.49068 * 19 7 6 39 39 H 1.07998 * 127.02213 * 179.97438 * 20 3 2 40 40 H 1.08994 * 109.47369 * 305.00219 * 22 21 20 41 41 H 0.96708 * 114.00037 * 60.00095 * 23 22 21 42 42 H 1.48500 * 109.99788 * 58.68211 * 24 22 21 43 43 H 1.48502 * 110.00332 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.1065 0.0000 4 6 1.8738 2.5158 0.0013 5 8 0.6888 2.7892 0.0022 6 7 2.7928 3.5017 0.0017 7 6 2.3677 4.8994 -0.1064 8 6 1.7989 5.2350 -1.4610 9 6 1.9725 4.3621 -2.5189 10 6 1.4468 4.6671 -3.7602 11 6 0.7561 5.8510 -3.9467 12 35 0.0424 6.2720 -5.6464 13 6 0.5871 6.7265 -2.8892 14 6 1.1089 6.4184 -1.6469 15 6 3.4223 5.9041 0.3870 16 6 2.7893 5.7638 1.7814 17 1 2.7185 6.7048 2.3270 18 8 3.3551 4.7101 2.5635 19 6 1.4877 5.3680 1.0644 20 6 3.6849 0.5992 -0.0006 21 6 3.5859 -0.7389 -0.0004 22 6 4.7459 -1.7008 -0.0014 23 8 5.4772 -1.5664 1.2190 24 14 4.1070 -3.4441 -0.1536 25 8 2.2888 -1.0838 -0.0057 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3634 0.8899 0.5137 29 1 3.7357 3.2857 0.0737 30 1 2.5154 3.4397 -2.3742 31 1 1.5793 3.9834 -4.5857 32 1 0.0482 7.6512 -3.0344 33 1 0.9774 7.1021 -0.8213 34 1 4.4437 5.5276 0.3313 35 1 3.3127 6.8991 -0.0441 36 1 4.1739 4.9530 3.0170 37 1 0.8492 6.2166 0.8185 38 1 0.9462 4.5590 1.5547 39 1 4.5927 1.1842 -0.0012 40 1 5.4011 -1.4791 -0.8438 41 1 4.9555 -1.7494 2.0124 42 1 3.3178 -3.5885 -1.4032 43 1 5.2413 -4.4026 -0.1551 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_13308374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:44:21 Heat of formation + Delta-G solvation = -26.837886 kcal Electronic energy + Delta-G solvation = -30898.237989 eV Core-core repulsion = 26538.558591 eV Total energy + Delta-G solvation = -4359.679398 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.045 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.77774 -42.10406 -39.85580 -39.27959 -37.99503 -36.27469 -34.54269 -33.70410 -33.18643 -33.03278 -31.98580 -30.35510 -29.39514 -26.98227 -26.36789 -25.34972 -24.23319 -23.78944 -22.61090 -22.09800 -20.75368 -20.21578 -18.95891 -18.67443 -17.90044 -17.82454 -17.64543 -17.09326 -16.68916 -16.41037 -16.17754 -15.90436 -15.83908 -15.67347 -15.21698 -15.07880 -14.68476 -14.57591 -14.39905 -14.27156 -14.19122 -13.98238 -13.86137 -13.67064 -13.31787 -13.04860 -12.87693 -12.77585 -12.59947 -12.41880 -12.27574 -12.25378 -11.70314 -11.47035 -11.33338 -10.96350 -10.93992 -10.89921 -10.59635 -10.09436 -10.08414 -9.60888 -9.56326 -5.01420 -0.02203 0.23363 0.24926 0.58312 0.83466 1.16216 1.39817 1.74205 1.89566 2.06476 2.27524 2.47351 3.13875 3.21709 3.44612 3.47345 3.51380 3.64867 3.68481 3.73076 3.77205 3.85866 3.91937 4.11491 4.24905 4.29964 4.34386 4.39465 4.46764 4.56380 4.58955 4.64419 4.67734 4.77212 4.82050 4.84802 4.88891 4.98914 5.03834 5.12094 5.14862 5.15064 5.20358 5.32180 5.64618 5.72964 5.89028 6.49526 6.61108 6.92706 7.20590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.083 3.917 3 C -0.267 4.267 4 C 0.594 3.406 5 O -0.560 6.560 6 N -0.684 5.684 7 C 0.189 3.811 8 C -0.060 4.060 9 C -0.110 4.110 10 C -0.099 4.099 11 C -0.106 4.106 12 Br -0.057 7.057 13 C -0.092 4.092 14 C -0.106 4.106 15 C -0.148 4.148 16 C 0.086 3.914 17 H 0.095 0.905 18 O -0.565 6.565 19 C -0.137 4.137 20 C -0.147 4.147 21 C -0.060 4.060 22 C -0.022 4.022 23 O -0.539 6.539 24 Si 0.774 3.226 25 O -0.171 6.171 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.412 0.588 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.397 0.603 37 H 0.119 0.881 38 H 0.058 0.942 39 H 0.174 0.826 40 H 0.139 0.861 41 H 0.399 0.601 42 H -0.296 1.296 43 H -0.278 1.278 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 1.662 4.579 6.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.030 3.970 3 C -0.271 4.271 4 C 0.384 3.616 5 O -0.441 6.441 6 N -0.335 5.335 7 C 0.102 3.898 8 C -0.061 4.061 9 C -0.129 4.129 10 C -0.119 4.119 11 C -0.185 4.185 12 Br 0.029 6.971 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.186 4.186 16 C 0.027 3.973 17 H 0.113 0.887 18 O -0.373 6.373 19 C -0.175 4.175 20 C -0.167 4.167 21 C -0.108 4.108 22 C -0.133 4.133 23 O -0.348 6.348 24 Si 0.679 3.321 25 O -0.068 6.068 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.249 0.751 30 H 0.140 0.860 31 H 0.150 0.850 32 H 0.166 0.834 33 H 0.177 0.823 34 H 0.112 0.888 35 H 0.141 0.859 36 H 0.247 0.753 37 H 0.137 0.863 38 H 0.077 0.923 39 H 0.191 0.809 40 H 0.156 0.844 41 H 0.250 0.750 42 H -0.223 1.223 43 H -0.204 1.204 Dipole moment (debyes) X Y Z Total from point charges 2.413 0.809 2.843 3.816 hybrid contribution 1.138 0.505 -0.082 1.248 sum 3.551 1.314 2.762 4.686 Atomic orbital electron populations 1.20678 0.82744 1.05661 1.04887 1.23179 0.94693 0.83043 0.96133 1.21252 0.94165 0.93628 1.18061 1.17241 0.85250 0.84086 0.75058 1.90760 1.17681 1.84315 1.51304 1.45152 1.10053 1.04092 1.74156 1.20031 0.97586 0.81890 0.90338 1.20144 0.96803 0.94468 0.94716 1.20994 1.00075 0.99667 0.92202 1.21198 0.96854 0.95551 0.98289 1.21944 1.04870 0.99028 0.92640 1.96745 1.84535 1.94109 1.21743 1.21341 0.98846 0.99310 0.91620 1.21205 0.97066 0.96832 0.97427 1.24035 0.98496 0.99438 0.96618 1.22702 0.93251 0.90811 0.90556 0.88734 1.86497 1.45239 1.39371 1.66232 1.23580 0.96706 1.02228 0.94966 1.22764 0.96373 0.93662 1.03856 1.22906 0.82888 0.96010 1.09006 1.24450 0.90200 1.07110 0.91540 1.86531 1.39520 1.93144 1.15556 0.93252 0.79717 0.72980 0.86179 1.83662 1.16741 1.34948 1.71494 0.88876 0.88054 0.88491 0.75108 0.86029 0.84964 0.83362 0.82334 0.88766 0.85910 0.75274 0.86334 0.92282 0.80856 0.84369 0.74975 1.22318 1.20409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.14 9.89 71.24 0.70 0.57 16 2 C 0.08 0.37 7.37 25.26 0.19 0.56 16 3 C -0.27 -1.31 6.31 -18.99 -0.12 -1.43 16 4 C 0.59 3.93 6.30 86.65 0.55 4.48 16 5 O -0.56 -6.92 13.26 -4.06 -0.05 -6.97 16 6 N -0.68 -0.63 3.75 -427.20 -1.60 -2.23 16 7 C 0.19 -0.09 0.94 3.38 0.00 -0.09 16 8 C -0.06 -0.13 4.89 -19.86 -0.10 -0.22 16 9 C -0.11 -0.52 8.98 22.27 0.20 -0.32 16 10 C -0.10 -0.52 9.79 22.29 0.22 -0.31 16 11 C -0.11 -0.52 6.22 22.31 0.14 -0.38 16 12 Br -0.06 -0.28 33.70 -20.37 -0.69 -0.97 16 13 C -0.09 -0.18 9.79 22.29 0.22 0.04 16 14 C -0.11 0.01 8.71 22.27 0.19 0.20 16 15 C -0.15 1.00 7.12 31.12 0.22 1.22 16 16 C 0.09 -0.42 5.28 31.12 0.16 -0.25 16 17 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 18 O -0.57 1.48 13.09 -148.98 -1.95 -0.47 16 19 C -0.14 -0.05 6.56 31.12 0.20 0.16 16 20 C -0.15 -0.14 10.49 23.65 0.25 0.11 16 21 C -0.06 -0.04 6.18 24.76 0.15 0.11 16 22 C -0.02 0.06 2.97 71.24 0.21 0.27 16 23 O -0.54 1.63 12.88 -148.98 -1.92 -0.28 16 24 Si 0.77 -1.65 32.09 68.60 2.20 0.55 16 25 O -0.17 -0.49 8.90 4.54 0.04 -0.45 16 26 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.10 -0.29 8.14 -2.39 -0.02 -0.30 16 28 H 0.10 0.48 6.48 -2.39 -0.02 0.46 16 29 H 0.41 -1.19 7.87 -92.71 -0.73 -1.92 16 30 H 0.12 0.55 6.73 -2.91 -0.02 0.53 16 31 H 0.13 0.50 8.06 -2.91 -0.02 0.48 16 32 H 0.15 -0.22 8.06 -2.91 -0.02 -0.24 16 33 H 0.16 -0.94 6.55 -2.91 -0.02 -0.96 16 34 H 0.09 -0.79 8.10 -2.39 -0.02 -0.81 16 35 H 0.12 -1.17 7.79 -2.39 -0.02 -1.18 16 36 H 0.40 -4.36 9.12 -74.06 -0.68 -5.03 16 37 H 0.12 -0.38 6.22 -2.39 -0.01 -0.39 16 38 H 0.06 0.48 6.95 -2.38 -0.02 0.46 16 39 H 0.17 -0.60 7.75 -2.91 -0.02 -0.63 16 40 H 0.14 -0.52 7.96 -2.39 -0.02 -0.54 16 41 H 0.40 -4.08 8.70 -74.05 -0.64 -4.72 16 42 H -0.30 -1.50 7.11 99.48 0.71 -0.80 16 43 H -0.28 -0.85 7.11 99.48 0.71 -0.14 16 Total: 0.00 -21.17 380.43 -1.48 -22.65 By element: Atomic # 1 Polarization: -15.62 SS G_CDS: -0.91 Total: -16.52 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 3.40 Total: 4.70 kcal Atomic # 7 Polarization: -0.63 SS G_CDS: -1.60 Total: -2.23 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -3.88 Total: -8.18 kcal Atomic # 14 Polarization: -1.65 SS G_CDS: 2.20 Total: 0.55 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -0.69 Total: -0.97 kcal Total: -21.17 -1.48 -22.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_13308374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.188 kcal (2) G-P(sol) polarization free energy of solvation -21.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds