Wall clock time and date at job start Sat Mar 6 2021 23:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86296 * 109.47421 * 2 1 4 4 C 1.50705 * 109.47093 * 119.99847 * 2 1 3 5 5 C 1.32690 * 124.68256 * 64.72389 * 4 2 1 6 6 C 1.44504 * 113.09897 * 179.88262 * 5 4 2 7 7 C 1.47045 * 123.49601 * 180.20950 * 6 5 4 8 8 O 1.21654 * 120.00387 * 180.23448 * 7 6 5 9 9 N 1.34780 * 119.99954 * 0.23171 * 7 6 5 10 10 C 1.46494 * 120.00242 * 175.05189 * 9 7 6 11 11 C 1.50703 * 112.84719 * 291.22736 * 10 9 7 12 12 C 1.38241 * 119.98919 * 346.61410 * 11 10 9 13 13 C 1.38225 * 120.00686 * 179.72680 * 12 11 10 14 14 C 1.38321 * 119.99177 * 0.54691 * 13 12 11 15 15 Br 1.89095 * 120.01328 * 179.70411 * 14 13 12 16 16 C 1.38329 * 119.97991 * 359.72878 * 14 13 12 17 17 C 1.38224 * 119.98670 * 359.97438 * 16 14 13 18 18 C 1.53782 * 113.61874 * 159.92417 * 10 9 7 19 19 C 1.53788 * 87.07680 * 270.88292 * 18 10 9 20 20 H 1.08999 * 113.68464 * 220.00818 * 19 18 10 21 21 O 1.42894 * 113.61393 * 89.11701 * 19 18 10 22 22 C 1.53776 * 113.61623 * 62.42249 * 10 9 7 23 23 C 1.36225 * 113.01606 * 0.39405 * 6 5 4 24 24 Cl 1.73601 * 124.60942 * 179.80711 * 23 6 5 25 25 S 1.70451 * 110.78829 * 359.79372 * 23 6 5 26 26 H 0.96704 * 113.99751 * 60.00181 * 1 2 3 27 27 H 1.09002 * 109.47581 * 239.99757 * 2 1 3 28 28 H 1.48503 * 109.99901 * 298.68204 * 3 2 1 29 29 H 1.48505 * 110.00049 * 59.99514 * 3 2 1 30 30 H 1.08002 * 123.45126 * 0.03401 * 5 4 2 31 31 H 0.97007 * 119.99738 * 355.04945 * 9 7 6 32 32 H 1.07995 * 119.99889 * 359.97438 * 12 11 10 33 33 H 1.07998 * 120.00230 * 180.25238 * 13 12 11 34 34 H 1.08000 * 120.00606 * 179.97438 * 16 14 13 35 35 H 1.08003 * 119.98815 * 179.97438 * 17 16 14 36 36 H 1.09000 * 113.61082 * 25.42336 * 18 10 9 37 37 H 1.08997 * 113.61625 * 156.33437 * 18 10 9 38 38 H 0.96695 * 114.00697 * 82.50082 * 21 19 18 39 39 H 1.09001 * 113.61564 * 203.66895 * 22 10 9 40 40 H 1.09000 * 113.61696 * 334.48270 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7437 -1.9985 1.4882 6 6 2.3347 -2.4185 2.7382 7 6 2.2681 -3.7974 3.2445 8 8 2.7851 -4.0803 4.3087 9 7 1.6341 -4.7479 2.5295 10 6 1.6602 -6.1420 2.9789 11 6 3.0269 -6.7672 2.8675 12 6 4.0167 -6.1387 2.1352 13 6 5.2720 -6.7090 2.0375 14 6 5.5344 -7.9143 2.6632 15 35 7.2491 -8.6992 2.5230 16 6 4.5420 -8.5457 3.3912 17 6 3.2888 -7.9716 3.4934 18 6 0.5360 -7.0035 2.3798 19 6 -0.3241 -6.5766 3.5811 20 1 -0.9387 -7.3800 3.9871 21 8 -1.0607 -5.3726 3.3586 22 6 0.9922 -6.3610 4.3465 23 6 2.9566 -1.4037 3.4009 24 17 3.7604 -1.5715 4.9304 25 16 2.8386 0.0533 2.5241 26 1 -0.3933 0.4417 -0.7651 27 1 1.7924 -0.5139 -0.8899 28 1 1.5879 2.4585 -1.2243 29 1 1.5614 2.4679 1.2085 30 1 1.2066 -2.6652 0.8299 31 1 1.1605 -4.5088 1.7174 32 1 3.8103 -5.2000 1.6426 33 1 6.0464 -6.2159 1.4687 34 1 4.7464 -9.4870 3.8796 35 1 2.5139 -8.4647 4.0615 36 1 0.1649 -6.6339 1.4239 37 1 0.7643 -8.0692 2.3630 38 1 -1.8896 -5.5017 2.8776 39 1 1.3452 -7.2510 4.8674 40 1 0.9907 -5.4732 4.9790 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_13431040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:44:51 Heat of formation + Delta-G solvation = -7.127336 kcal Electronic energy + Delta-G solvation = -30631.969509 eV Core-core repulsion = 26192.953330 eV Total energy + Delta-G solvation = -4439.016179 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.963 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.20002 -40.29361 -39.44892 -38.67945 -37.96667 -37.08978 -36.25208 -34.04133 -33.15428 -32.00348 -31.74170 -30.31645 -27.09835 -26.90306 -26.46628 -24.81176 -23.80647 -22.47951 -21.98287 -20.81290 -20.23059 -19.26727 -18.64375 -18.57640 -18.15609 -17.55316 -16.91042 -16.58468 -16.36076 -16.21468 -15.92832 -15.84049 -15.38462 -15.33992 -14.86207 -14.61663 -14.53586 -14.40481 -14.36894 -14.25934 -14.00801 -13.69106 -13.28130 -13.07481 -13.02844 -12.60975 -12.57431 -12.47595 -12.38142 -12.23661 -12.05954 -12.03167 -11.67373 -11.39578 -11.30249 -10.92700 -10.80839 -10.56695 -10.11892 -10.04560 -9.86726 -9.67323 -9.53846 -5.05570 -0.62468 -0.20623 0.01506 0.28579 0.47044 0.61667 0.74187 1.03341 1.18174 1.52050 1.88445 2.07285 2.21447 2.50941 3.14552 3.19622 3.46360 3.52417 3.59006 3.66459 3.75603 3.79885 3.88453 3.89925 4.00459 4.28286 4.33298 4.39647 4.41877 4.49912 4.62115 4.69519 4.76403 4.83828 4.87489 4.90328 4.97379 5.00971 5.05430 5.17130 5.18299 5.34113 5.65620 5.76718 6.47986 6.56921 6.93402 7.19949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.031 4.031 3 Si 0.694 3.306 4 C -0.188 4.188 5 C -0.068 4.068 6 C -0.164 4.164 7 C 0.577 3.423 8 O -0.544 6.544 9 N -0.682 5.682 10 C 0.191 3.809 11 C -0.060 4.060 12 C -0.108 4.108 13 C -0.098 4.098 14 C -0.106 4.106 15 Br -0.058 7.058 16 C -0.093 4.093 17 C -0.108 4.108 18 C -0.145 4.145 19 C 0.085 3.915 20 H 0.093 0.907 21 O -0.566 6.566 22 C -0.140 4.140 23 C -0.139 4.139 24 Cl 0.003 6.997 25 S 0.254 5.746 26 H 0.402 0.598 27 H 0.124 0.876 28 H -0.248 1.248 29 H -0.277 1.277 30 H 0.180 0.820 31 H 0.414 0.586 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.146 0.854 35 H 0.156 0.844 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.397 0.603 39 H 0.117 0.883 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 -0.538 -8.122 9.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.143 4.143 3 Si 0.596 3.404 4 C -0.305 4.305 5 C -0.097 4.097 6 C -0.184 4.184 7 C 0.363 3.637 8 O -0.423 6.423 9 N -0.334 5.334 10 C 0.104 3.896 11 C -0.061 4.061 12 C -0.127 4.127 13 C -0.118 4.118 14 C -0.185 4.185 15 Br 0.028 6.972 16 C -0.113 4.113 17 C -0.127 4.127 18 C -0.182 4.182 19 C 0.026 3.974 20 H 0.111 0.889 21 O -0.374 6.374 22 C -0.178 4.178 23 C -0.286 4.286 24 Cl 0.032 6.968 25 S 0.519 5.481 26 H 0.253 0.747 27 H 0.142 0.858 28 H -0.172 1.172 29 H -0.203 1.203 30 H 0.197 0.803 31 H 0.252 0.748 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.247 0.753 39 H 0.135 0.865 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.425 1.224 -6.187 6.757 hybrid contribution -2.115 -1.205 -0.743 2.545 sum -4.541 0.019 -6.929 8.285 Atomic orbital electron populations 1.86562 1.17435 1.80471 1.51585 1.24075 0.84553 1.09793 0.95906 0.94619 0.91013 0.74367 0.80410 1.23784 1.07727 0.97590 1.01409 1.21128 0.98690 0.95575 0.94312 1.20369 1.05929 0.94380 0.97685 1.17523 0.78213 0.84122 0.83874 1.90862 1.47009 1.82126 1.22259 1.45176 1.54140 1.05567 1.28478 1.19998 0.90913 0.81405 0.97288 1.20119 0.95349 0.94726 0.95954 1.21029 0.92411 0.99919 0.99338 1.21224 0.97788 0.93953 0.98797 1.21947 0.92629 0.98622 1.05320 1.96741 1.20523 1.82224 1.97730 1.21318 0.92264 1.00419 0.97313 1.21183 0.97048 0.95098 0.99357 1.24015 0.93364 1.00968 0.99893 1.22703 0.92021 0.87392 0.95283 0.88920 1.86505 1.39250 1.31732 1.79895 1.23584 0.94902 1.03265 0.96024 1.25730 1.05117 1.01852 0.95917 1.98421 1.76411 1.97477 1.24452 1.83296 1.50169 1.05071 1.09533 0.74652 0.85839 1.17203 1.20324 0.80275 0.74803 0.85478 0.84684 0.83600 0.82619 0.88341 0.85910 0.75283 0.86525 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.11 12.85 -148.98 -1.92 0.20 16 2 C -0.03 0.19 2.93 71.24 0.21 0.39 16 3 Si 0.69 -3.42 30.92 68.60 2.12 -1.30 16 4 C -0.19 0.27 5.69 24.52 0.14 0.41 16 5 C -0.07 0.08 9.75 22.70 0.22 0.30 16 6 C -0.16 -0.81 5.98 -19.84 -0.12 -0.93 16 7 C 0.58 4.10 6.28 86.55 0.54 4.65 16 8 O -0.54 -7.80 13.32 -4.20 -0.06 -7.85 16 9 N -0.68 -0.22 3.73 -427.51 -1.59 -1.81 16 10 C 0.19 -0.11 0.94 3.38 0.00 -0.11 16 11 C -0.06 -0.12 4.89 -19.86 -0.10 -0.22 16 12 C -0.11 -0.42 8.98 22.27 0.20 -0.22 16 13 C -0.10 -0.47 9.79 22.29 0.22 -0.25 16 14 C -0.11 -0.53 6.22 22.31 0.14 -0.39 16 15 Br -0.06 -0.29 33.70 -20.37 -0.69 -0.97 16 16 C -0.09 -0.22 9.79 22.29 0.22 0.00 16 17 C -0.11 -0.04 8.71 22.27 0.19 0.15 16 18 C -0.14 1.03 7.13 31.12 0.22 1.25 16 19 C 0.09 -0.37 5.28 31.12 0.16 -0.21 16 20 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 21 O -0.57 1.15 13.08 -148.98 -1.95 -0.80 16 22 C -0.14 -0.19 6.56 31.12 0.20 0.01 16 23 C -0.14 -0.92 6.87 67.35 0.46 -0.46 16 24 Cl 0.00 0.04 27.20 -2.72 -0.07 -0.04 16 25 S 0.25 0.30 20.19 -56.49 -1.14 -0.84 16 26 H 0.40 -4.81 8.74 -74.05 -0.65 -5.46 16 27 H 0.12 -1.46 7.96 -2.39 -0.02 -1.48 16 28 H -0.25 0.60 7.11 99.48 0.71 1.31 16 29 H -0.28 -0.73 7.11 99.48 0.71 -0.02 16 30 H 0.18 -1.24 7.11 -2.91 -0.02 -1.26 16 31 H 0.41 -1.98 7.24 -92.70 -0.67 -2.65 16 32 H 0.13 0.34 6.73 -2.91 -0.02 0.32 16 33 H 0.14 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.15 -0.11 8.06 -2.91 -0.02 -0.14 16 35 H 0.16 -0.80 6.55 -2.91 -0.02 -0.82 16 36 H 0.10 -0.95 8.10 -2.39 -0.02 -0.97 16 37 H 0.12 -1.20 7.79 -2.39 -0.02 -1.22 16 38 H 0.40 -4.19 9.12 -74.06 -0.68 -4.87 16 39 H 0.12 -0.22 6.22 -2.39 -0.01 -0.23 16 40 H 0.05 0.55 6.95 -2.39 -0.02 0.53 16 Total: 0.00 -23.18 381.75 -3.17 -26.34 By element: Atomic # 1 Polarization: -16.53 SS G_CDS: -0.79 Total: -17.33 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 2.92 Total: 4.40 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: -1.59 Total: -1.81 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -3.92 Total: -8.45 kcal Atomic # 14 Polarization: -3.42 SS G_CDS: 2.12 Total: -1.30 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.14 Total: -0.84 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.07 Total: -0.04 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -0.69 Total: -0.97 kcal Total: -23.18 -3.17 -26.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_13431040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.217 kcal (2) G-P(sol) polarization free energy of solvation -23.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds