Wall clock time and date at job start Sat Mar 6 2021 23:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86300 * 109.46844 * 2 1 4 4 C 1.50694 * 109.47282 * 119.99909 * 2 1 3 5 5 C 1.34176 * 125.43932 * 65.00204 * 4 2 1 6 6 C 1.47016 * 105.95703 * 179.97438 * 5 4 2 7 7 C 1.47377 * 127.19534 * 179.97438 * 6 5 4 8 8 O 1.21618 * 119.99658 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00373 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00259 * 174.76520 * 9 7 6 11 11 C 1.50701 * 112.84864 * 292.20563 * 10 9 7 12 12 C 1.38247 * 119.98566 * 165.10178 * 11 10 9 13 13 C 1.38224 * 120.00616 * 179.72923 * 12 11 10 14 14 C 1.38328 * 119.98875 * 0.54442 * 13 12 11 15 15 Br 1.89098 * 120.01182 * 179.70638 * 14 13 12 16 16 C 1.38328 * 119.97906 * 359.73069 * 14 13 12 17 17 C 1.38224 * 119.99227 * 359.97438 * 16 14 13 18 18 C 1.53785 * 113.61541 * 160.90046 * 10 9 7 19 19 C 1.53785 * 87.08075 * 270.88321 * 18 10 9 20 20 H 1.08995 * 113.69212 * 220.00383 * 19 18 10 21 21 O 1.42900 * 113.61036 * 89.11392 * 19 18 10 22 22 C 1.53778 * 113.61410 * 63.40211 * 10 9 7 23 23 C 1.36415 * 105.61805 * 0.02562 * 6 5 4 24 24 O 1.33656 * 108.39219 * 359.97438 * 23 6 5 25 25 H 0.96695 * 114.00057 * 299.99726 * 1 2 3 26 26 H 1.08996 * 109.46961 * 240.00760 * 2 1 3 27 27 H 1.48510 * 109.99943 * 300.00274 * 3 2 1 28 28 H 1.48505 * 110.00100 * 61.31751 * 3 2 1 29 29 H 1.08007 * 127.02298 * 359.73935 * 5 4 2 30 30 H 0.96998 * 120.00268 * 354.76793 * 9 7 6 31 31 H 1.07997 * 119.99807 * 359.97438 * 12 11 10 32 32 H 1.07995 * 120.00709 * 180.29949 * 13 12 11 33 33 H 1.08004 * 120.00707 * 179.97438 * 16 14 13 34 34 H 1.07996 * 119.99371 * 179.97438 * 17 16 14 35 35 H 1.08998 * 113.61139 * 25.43095 * 18 10 9 36 36 H 1.08999 * 113.61265 * 156.33819 * 18 10 9 37 37 H 0.96700 * 113.99655 * 82.50898 * 21 19 18 38 38 H 1.09003 * 113.61563 * 203.66319 * 22 10 9 39 39 H 1.08998 * 113.61643 * 334.48909 * 22 10 9 40 40 H 1.07997 * 125.80579 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 1.7553 -2.0121 1.5036 6 6 2.4132 -2.2462 2.7974 7 6 2.5009 -3.5191 3.5349 8 8 1.9933 -4.5243 3.0754 9 7 3.1435 -3.5694 4.7184 10 6 3.1329 -4.8047 5.5060 11 6 1.7678 -5.1411 6.0485 12 6 1.5131 -6.4071 6.5421 13 6 0.2628 -6.7144 7.0450 14 6 -0.7369 -5.7583 7.0439 15 35 -2.4501 -6.1806 7.7241 16 6 -0.4832 -4.4935 6.5447 17 6 0.7692 -4.1852 6.0477 18 6 4.2507 -4.8730 6.5599 19 6 5.1300 -5.5114 5.4716 20 1 5.7562 -6.3256 5.8363 21 8 5.8561 -4.5597 4.6912 22 6 3.8266 -5.9863 4.8078 23 6 2.9246 -1.0387 3.1731 24 8 2.6267 -0.1420 2.2278 25 1 -0.3933 0.4416 0.7650 26 1 1.7924 -0.5137 -0.8900 27 1 1.5614 2.4679 -1.2085 28 1 1.5878 2.4586 1.2242 29 1 1.2331 -2.7388 0.8987 30 1 3.6131 -2.7876 5.0490 31 1 2.2923 -7.1549 6.5384 32 1 0.0653 -7.7019 7.4350 33 1 -1.2636 -3.7468 6.5433 34 1 0.9671 -3.1978 5.6575 35 1 4.6025 -3.8947 6.8872 36 1 4.0278 -5.5434 7.3899 37 1 6.6768 -4.2573 5.1035 38 1 3.4878 -6.9610 5.1589 39 1 3.8349 -5.9074 3.7207 40 1 3.4770 -0.8410 4.0798 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_13456056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:44:55 Heat of formation + Delta-G solvation = -23.369780 kcal Electronic energy + Delta-G solvation = -28480.367617 eV Core-core repulsion = 24276.376226 eV Total energy + Delta-G solvation = -4203.991391 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.029 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.72696 -42.11522 -39.85485 -39.26878 -38.16837 -36.25671 -34.52598 -33.60479 -33.18888 -32.09371 -31.62790 -30.33092 -27.02896 -26.81871 -25.97653 -24.54362 -23.82240 -22.45365 -22.27363 -21.06664 -20.28755 -19.40813 -18.67889 -18.02537 -17.67489 -17.53656 -17.29733 -17.01413 -16.43549 -16.24363 -16.04931 -15.90938 -15.68405 -15.23464 -15.19127 -14.70336 -14.52994 -14.37822 -14.23447 -13.99053 -13.77381 -13.60723 -13.27141 -13.04725 -12.96436 -12.58679 -12.42392 -12.27611 -12.14477 -11.71427 -11.50566 -11.34144 -11.04586 -10.95100 -10.91500 -10.76150 -10.13447 -10.09083 -9.80329 -9.58206 -4.92105 -0.02808 0.23858 0.27755 0.57665 0.81729 1.17128 1.52600 1.74983 1.93946 1.97967 2.27676 2.46842 3.14242 3.20447 3.42697 3.47182 3.54340 3.57401 3.65659 3.72042 3.82868 3.85443 3.99940 4.23983 4.28267 4.38153 4.40063 4.48855 4.50397 4.58763 4.68296 4.83587 4.84521 4.87275 4.90965 4.99351 5.03533 5.11720 5.13191 5.14391 5.30034 5.62007 5.72653 5.82571 6.33056 6.49390 6.96636 7.19945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.047 4.047 3 Si 0.793 3.207 4 C -0.050 4.050 5 C -0.151 4.151 6 C -0.267 4.267 7 C 0.591 3.409 8 O -0.572 6.572 9 N -0.682 5.682 10 C 0.189 3.811 11 C -0.061 4.061 12 C -0.108 4.108 13 C -0.093 4.093 14 C -0.107 4.107 15 Br -0.057 7.057 16 C -0.100 4.100 17 C -0.110 4.110 18 C -0.143 4.143 19 C 0.088 3.912 20 H 0.094 0.906 21 O -0.564 6.564 22 C -0.143 4.143 23 C 0.064 3.936 24 O -0.164 6.164 25 H 0.390 0.610 26 H 0.147 0.853 27 H -0.288 1.288 28 H -0.284 1.284 29 H 0.141 0.859 30 H 0.417 0.583 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.399 0.601 38 H 0.116 0.884 39 H 0.053 0.947 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.945 3.559 5.191 10.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.155 4.155 3 Si 0.695 3.305 4 C -0.098 4.098 5 C -0.171 4.171 6 C -0.271 4.271 7 C 0.380 3.620 8 O -0.452 6.452 9 N -0.334 5.334 10 C 0.102 3.898 11 C -0.063 4.063 12 C -0.127 4.127 13 C -0.113 4.113 14 C -0.186 4.186 15 Br 0.028 6.972 16 C -0.120 4.120 17 C -0.129 4.129 18 C -0.181 4.181 19 C 0.029 3.971 20 H 0.112 0.888 21 O -0.373 6.373 22 C -0.181 4.181 23 C -0.006 4.006 24 O -0.060 6.060 25 H 0.240 0.760 26 H 0.164 0.836 27 H -0.215 1.215 28 H -0.210 1.210 29 H 0.159 0.841 30 H 0.255 0.745 31 H 0.175 0.825 32 H 0.165 0.835 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.139 0.861 37 H 0.249 0.751 38 H 0.134 0.866 39 H 0.072 0.928 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 7.383 3.434 4.166 9.147 hybrid contribution -0.756 -0.143 0.578 0.962 sum 6.627 3.291 4.744 8.790 Atomic orbital electron populations 1.86652 1.17579 1.80603 1.50014 1.24739 0.83460 1.13496 0.93810 0.93434 0.89830 0.70114 0.77099 1.22668 1.01442 0.92714 0.92974 1.22535 1.02294 0.95938 0.96332 1.21505 1.11132 0.95062 0.99418 1.17407 0.77253 0.86847 0.80475 1.90799 1.48763 1.37035 1.68564 1.45137 1.54135 1.14841 1.19302 1.20033 0.90774 0.85974 0.93044 1.20162 0.95482 0.94029 0.96627 1.21221 0.97149 0.96210 0.98133 1.21339 0.92215 0.99239 0.98498 1.21958 0.92666 0.97588 1.06371 1.96743 1.20633 1.94344 1.85457 1.21229 0.97910 0.95299 0.97570 1.21032 0.92414 1.00221 0.99232 1.24013 0.93049 1.04552 0.96478 1.22668 0.92025 0.91688 0.90761 0.88837 1.86491 1.40539 1.61901 1.48335 1.23612 0.95164 0.98417 1.00885 1.25267 0.96940 0.85093 0.93311 1.83718 1.56912 1.38977 1.26393 0.75978 0.83600 1.21460 1.21025 0.84130 0.74534 0.82462 0.83486 0.84839 0.85445 0.87904 0.86059 0.75074 0.86612 0.92807 0.72363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.40 12.88 -148.98 -1.92 -3.32 16 2 C -0.05 0.04 2.97 71.23 0.21 0.25 16 3 Si 0.79 -2.40 32.09 68.60 2.20 -0.20 16 4 C -0.05 -0.07 6.18 24.76 0.15 0.09 16 5 C -0.15 -0.92 10.90 23.65 0.26 -0.66 16 6 C -0.27 -0.83 6.31 -18.99 -0.12 -0.95 16 7 C 0.59 3.69 6.32 86.65 0.55 4.23 16 8 O -0.57 -9.15 15.44 -4.09 -0.06 -9.21 16 9 N -0.68 1.26 3.75 -427.19 -1.60 -0.34 16 10 C 0.19 -0.32 0.94 3.38 0.00 -0.32 16 11 C -0.06 -0.11 4.83 -19.86 -0.10 -0.20 16 12 C -0.11 -0.03 8.80 22.27 0.20 0.16 16 13 C -0.09 -0.23 9.79 22.29 0.22 -0.01 16 14 C -0.11 -0.56 6.22 22.31 0.14 -0.42 16 15 Br -0.06 -0.31 33.70 -20.37 -0.69 -0.99 16 16 C -0.10 -0.52 9.79 22.29 0.22 -0.30 16 17 C -0.11 -0.43 8.96 22.27 0.20 -0.23 16 18 C -0.14 1.27 7.13 31.12 0.22 1.49 16 19 C 0.09 -0.55 5.28 31.12 0.16 -0.38 16 20 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 21 O -0.56 2.80 13.09 -148.98 -1.95 0.85 16 22 C -0.14 -0.05 6.56 31.12 0.20 0.15 16 23 C 0.06 -0.32 11.61 67.39 0.78 0.46 16 24 O -0.16 0.32 8.90 4.44 0.04 0.36 16 25 H 0.39 -1.26 8.70 -74.06 -0.64 -1.91 16 26 H 0.15 -0.44 7.96 -2.39 -0.02 -0.46 16 27 H -0.29 -0.96 7.11 99.48 0.71 -0.25 16 28 H -0.28 -0.48 7.11 99.48 0.71 0.23 16 29 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 30 H 0.42 -3.74 7.66 -92.71 -0.71 -4.45 16 31 H 0.16 -0.84 6.44 -2.91 -0.02 -0.86 16 32 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 33 H 0.13 0.47 8.06 -2.91 -0.02 0.44 16 34 H 0.13 0.29 6.77 -2.91 -0.02 0.27 16 35 H 0.10 -1.25 8.10 -2.39 -0.02 -1.27 16 36 H 0.12 -1.33 7.85 -2.39 -0.02 -1.35 16 37 H 0.40 -5.50 9.12 -74.06 -0.68 -6.18 16 38 H 0.12 -0.30 6.14 -2.39 -0.01 -0.32 16 39 H 0.05 0.49 7.03 -2.39 -0.02 0.47 16 40 H 0.26 -4.17 7.48 -2.91 -0.02 -4.19 16 Total: 0.00 -27.57 362.23 -1.53 -29.10 By element: Atomic # 1 Polarization: -18.73 SS G_CDS: -0.85 Total: -19.58 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 3.30 Total: 3.34 kcal Atomic # 7 Polarization: 1.26 SS G_CDS: -1.60 Total: -0.34 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -3.89 Total: -11.33 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.20 Total: -0.20 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -0.69 Total: -0.99 kcal Total: -27.57 -1.53 -29.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_13456056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.730 kcal (2) G-P(sol) polarization free energy of solvation -27.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds