Wall clock time and date at job start Sat Mar 6 2021 23:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86305 * 109.46895 * 2 1 4 4 C 1.50697 * 109.46985 * 239.99963 * 2 1 3 5 5 C 1.31116 * 118.54550 * 120.00065 * 4 2 1 6 6 N 1.38927 * 121.85076 * 180.40544 * 5 4 2 7 7 C 1.47030 * 118.87992 * 346.95632 * 6 5 4 8 8 C 1.50705 * 109.81875 * 162.93091 * 7 6 5 9 9 O 1.21279 * 119.99653 * 339.99788 * 8 7 6 10 10 N 1.34770 * 119.99648 * 160.00011 * 8 7 6 11 11 C 1.46506 * 119.99638 * 175.30434 * 10 8 7 12 12 C 1.50701 * 112.85082 * 292.07202 * 11 10 8 13 13 C 1.38244 * 119.98971 * 164.89450 * 12 11 10 14 14 C 1.38220 * 120.00667 * 179.72545 * 13 12 11 15 15 C 1.38319 * 119.98978 * 0.55191 * 14 13 12 16 16 Br 1.89106 * 120.00797 * 179.70416 * 15 14 13 17 17 C 1.38327 * 119.98300 * 359.72111 * 15 14 13 18 18 C 1.38217 * 119.99006 * 0.02562 * 17 15 14 19 19 C 1.53785 * 113.61434 * 160.76735 * 11 10 8 20 20 C 1.53778 * 87.07778 * 270.88551 * 19 11 10 21 21 H 1.09003 * 113.61103 * 220.01790 * 20 19 11 22 22 O 1.42898 * 113.69281 * 89.12904 * 20 19 11 23 23 C 1.53777 * 87.08446 * 334.56435 * 20 19 11 24 24 C 1.53144 * 107.86263 * 43.31422 * 7 6 5 25 25 C 1.50197 * 118.55109 * 300.01723 * 4 2 1 26 26 H 0.96704 * 114.00260 * 299.99702 * 1 2 3 27 27 H 1.08996 * 109.47009 * 119.99913 * 2 1 3 28 28 H 1.48493 * 109.99848 * 178.67952 * 3 2 1 29 29 H 1.48500 * 109.99806 * 300.00064 * 3 2 1 30 30 H 1.08008 * 119.07757 * 0.37779 * 5 4 2 31 31 H 0.97002 * 120.55645 * 166.68635 * 6 5 4 32 32 H 1.09000 * 109.82373 * 283.84923 * 7 6 5 33 33 H 0.96998 * 120.00614 * 355.30551 * 10 8 7 34 34 H 1.07997 * 119.98937 * 359.97438 * 13 12 11 35 35 H 1.08004 * 120.00239 * 180.29668 * 14 13 12 36 36 H 1.07997 * 120.00389 * 179.97438 * 17 15 14 37 37 H 1.08000 * 119.99869 * 180.02562 * 18 17 15 38 38 H 1.08998 * 113.61151 * 25.42956 * 19 11 10 39 39 H 1.08994 * 113.61313 * 156.33520 * 19 11 10 40 40 H 0.96697 * 114.00240 * 82.46292 * 22 20 19 41 41 H 1.08996 * 113.61939 * 270.88795 * 23 20 19 42 42 H 1.09007 * 113.69249 * 139.99003 * 23 20 19 43 43 H 1.09000 * 109.66445 * 179.48884 * 24 7 6 44 44 H 1.08995 * 109.60056 * 59.10578 * 24 7 6 45 45 H 1.09002 * 109.32897 * 280.21341 * 25 4 2 46 46 H 1.09006 * 109.32887 * 39.69093 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.6831 -0.0460 -2.0745 6 7 3.1763 -0.6306 -3.2342 7 6 3.0958 -2.0912 -3.3829 8 6 3.2844 -2.4687 -4.8296 9 8 3.1077 -1.6427 -5.6998 10 7 3.6493 -3.7243 -5.1562 11 6 3.7327 -4.1199 -6.5644 12 6 2.3866 -4.1642 -7.2406 13 6 2.3074 -4.2096 -8.6200 14 6 1.0731 -4.2559 -9.2403 15 6 -0.0831 -4.2453 -8.4811 16 35 -1.7722 -4.3003 -9.3296 17 6 -0.0034 -4.1942 -7.1011 18 6 1.2313 -4.1532 -6.4814 19 6 4.5849 -5.3780 -6.8014 20 6 5.7937 -4.4375 -6.9388 21 1 6.4844 -4.7270 -7.7308 22 8 6.4525 -4.1645 -5.7004 23 6 4.7965 -3.3452 -7.3600 24 6 1.7097 -2.5360 -2.9074 25 6 1.5483 -2.1481 -1.4359 26 1 -0.3934 0.4417 0.7651 27 1 1.7923 -0.5138 0.8900 28 1 3.5345 1.7704 0.0322 29 1 1.5614 2.4679 -1.2085 30 1 2.9254 0.9850 -1.8625 31 1 3.5637 -0.0841 -3.9358 32 1 3.8631 -2.5677 -2.7727 33 1 3.8567 -4.3661 -4.4591 34 1 3.2102 -4.2129 -9.2127 35 1 1.0114 -4.2962 -10.3178 36 1 -0.9059 -4.1855 -6.5080 37 1 1.2937 -4.1137 -5.4039 38 1 4.6407 -6.0370 -5.9350 39 1 4.3362 -5.9067 -7.7215 40 1 7.0810 -4.8478 -5.4302 41 1 4.6058 -3.3183 -8.4328 42 1 5.0222 -2.3626 -6.9454 43 1 1.6148 -3.6167 -3.0137 44 1 0.9426 -2.0409 -3.5028 45 1 2.1882 -2.7831 -0.8231 46 1 0.5098 -2.2911 -1.1369 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12891094_15413834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:45:07 Heat of formation + Delta-G solvation = -19.354468 kcal Electronic energy + Delta-G solvation = -31509.311248 eV Core-core repulsion = 27220.363538 eV Total energy + Delta-G solvation = -4288.947709 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 409.072 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.36175 -40.74610 -39.61960 -39.03693 -37.31924 -36.40706 -34.39249 -33.26584 -33.14861 -32.88106 -31.98063 -30.30827 -27.74211 -27.15187 -25.68961 -25.19115 -24.02789 -23.52048 -22.53876 -21.84304 -20.42646 -19.28453 -19.07809 -18.76478 -18.20807 -17.96562 -17.44958 -17.17476 -16.54183 -16.43535 -15.97977 -15.83831 -15.61124 -15.34981 -15.24279 -14.98091 -14.70718 -14.64065 -14.39634 -14.34567 -14.17590 -13.80678 -13.68052 -13.47372 -13.27954 -13.10677 -13.02660 -12.75312 -12.45349 -12.35251 -12.27218 -11.97040 -11.72197 -11.57381 -11.48360 -11.29844 -11.21256 -11.15562 -10.70152 -10.18127 -10.11121 -10.05389 -9.53888 -8.43571 -4.89635 0.01279 0.27738 0.68181 1.29559 1.43636 1.49622 1.69809 1.75539 2.04074 2.47779 2.56784 2.87225 3.23995 3.36111 3.43488 3.50363 3.59115 3.63727 3.69776 3.80056 3.85355 3.94361 3.99563 4.13442 4.20312 4.27118 4.33303 4.36053 4.42843 4.51784 4.53053 4.58321 4.63576 4.68310 4.73299 4.76313 4.89367 4.95649 5.03042 5.13837 5.16584 5.18204 5.25166 5.28854 5.55119 5.57418 5.73641 6.20590 6.38564 6.48651 6.77116 6.83290 7.10581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.044 4.044 3 Si 0.664 3.336 4 C -0.231 4.231 5 C 0.133 3.867 6 N -0.731 5.731 7 C 0.139 3.861 8 C 0.518 3.482 9 O -0.518 6.518 10 N -0.697 5.697 11 C 0.197 3.803 12 C -0.058 4.058 13 C -0.107 4.107 14 C -0.086 4.086 15 C -0.091 4.091 16 Br -0.049 7.049 17 C -0.086 4.086 18 C -0.099 4.099 19 C -0.161 4.161 20 C 0.080 3.920 21 H 0.076 0.924 22 O -0.545 6.545 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.052 4.052 26 H 0.377 0.623 27 H 0.063 0.937 28 H -0.258 1.258 29 H -0.253 1.253 30 H 0.123 0.877 31 H 0.409 0.591 32 H 0.090 0.910 33 H 0.406 0.594 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.382 0.618 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -4.175 3.603 6.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.156 4.156 3 Si 0.567 3.433 4 C -0.242 4.242 5 C 0.013 3.987 6 N -0.364 5.364 7 C 0.029 3.971 8 C 0.303 3.697 9 O -0.392 6.392 10 N -0.349 5.349 11 C 0.109 3.891 12 C -0.060 4.060 13 C -0.126 4.126 14 C -0.106 4.106 15 C -0.170 4.170 16 Br 0.036 6.964 17 C -0.106 4.106 18 C -0.118 4.118 19 C -0.199 4.199 20 C 0.021 3.979 21 H 0.093 0.907 22 O -0.351 6.351 23 C -0.168 4.168 24 C -0.166 4.166 25 C -0.089 4.089 26 H 0.224 0.776 27 H 0.081 0.919 28 H -0.184 1.184 29 H -0.178 1.178 30 H 0.139 0.861 31 H 0.246 0.754 32 H 0.107 0.893 33 H 0.242 0.758 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.126 0.874 40 H 0.229 0.771 41 H 0.125 0.875 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.040 -2.894 1.649 4.510 hybrid contribution 0.971 -1.041 0.138 1.431 sum 4.012 -3.935 1.788 5.897 Atomic orbital electron populations 1.86487 1.18010 1.81587 1.49329 1.24345 0.85062 1.08478 0.97731 0.95552 0.80514 0.79496 0.87739 1.20022 1.06517 0.97986 0.99631 1.20119 0.95365 0.95720 0.87482 1.44172 1.68365 1.04665 1.19185 1.20900 0.99519 0.83842 0.92820 1.20505 0.76163 0.82146 0.90883 1.90747 1.49099 1.49109 1.50233 1.45405 1.69884 1.12833 1.06737 1.19858 0.90708 0.96770 0.81729 1.19898 0.94312 0.98139 0.93651 1.20919 0.97569 1.00546 0.93583 1.21098 0.90872 0.98423 1.00228 1.21846 0.91847 1.08166 0.95166 1.96776 1.22228 1.97569 1.79793 1.21120 0.98608 0.98256 0.92643 1.20920 0.91303 0.99509 1.00082 1.24044 0.96035 0.95746 1.04114 1.22713 0.92447 0.95850 0.86937 0.90650 1.86514 1.59940 1.49820 1.38811 1.23510 0.92815 0.99834 1.00619 1.21810 0.95197 1.01327 0.98245 1.19938 1.02444 0.92352 0.94169 0.77622 0.91925 1.18362 1.17795 0.86061 0.75424 0.89289 0.75847 0.84920 0.84713 0.84959 0.85704 0.89694 0.87408 0.77078 0.87544 0.89034 0.90316 0.90442 0.91623 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.59 12.51 -35.23 -0.44 -1.03 16 2 C -0.04 -0.03 2.82 36.00 0.10 0.07 16 3 Si 0.66 -0.07 29.68 -169.99 -5.04 -5.11 16 4 C -0.23 -0.56 5.48 -101.34 -0.56 -1.11 16 5 C 0.13 0.39 9.63 -16.08 -0.15 0.23 16 6 N -0.73 -1.81 5.47 -55.54 -0.30 -2.12 16 7 C 0.14 0.09 3.35 -68.72 -0.23 -0.14 16 8 C 0.52 0.79 5.60 -10.99 -0.06 0.73 16 9 O -0.52 -2.71 14.56 5.56 0.08 -2.63 16 10 N -0.70 0.72 3.76 -47.92 -0.18 0.54 16 11 C 0.20 -0.15 0.93 -132.15 -0.12 -0.28 16 12 C -0.06 -0.04 4.83 -104.62 -0.50 -0.55 16 13 C -0.11 -0.03 8.81 -39.59 -0.35 -0.38 16 14 C -0.09 -0.10 9.79 -39.56 -0.39 -0.48 16 15 C -0.09 -0.20 6.22 -39.52 -0.25 -0.44 16 16 Br -0.05 -0.11 33.70 -68.01 -2.29 -2.40 16 17 C -0.09 -0.16 9.79 -39.56 -0.39 -0.55 16 18 C -0.10 -0.14 8.97 -39.59 -0.35 -0.49 16 19 C -0.16 0.51 7.13 -25.92 -0.18 0.32 16 20 C 0.08 -0.18 5.27 -25.92 -0.14 -0.32 16 21 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 22 O -0.55 0.90 13.09 -35.23 -0.46 0.44 16 23 C -0.13 0.02 6.56 -25.92 -0.17 -0.15 16 24 C -0.13 -0.04 5.45 -26.64 -0.15 -0.19 16 25 C -0.05 -0.05 5.84 -28.11 -0.16 -0.22 16 26 H 0.38 -1.42 8.74 45.56 0.40 -1.02 16 27 H 0.06 -0.04 7.96 -51.93 -0.41 -0.46 16 28 H -0.26 -0.57 7.11 56.52 0.40 -0.17 16 29 H -0.25 -0.86 7.11 56.52 0.40 -0.46 16 30 H 0.12 0.33 4.37 -52.48 -0.23 0.10 16 31 H 0.41 1.15 8.12 -40.82 -0.33 0.82 16 32 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.41 -1.33 8.68 -40.82 -0.35 -1.69 16 34 H 0.13 -0.27 6.43 -52.49 -0.34 -0.61 16 35 H 0.13 -0.04 8.06 -52.48 -0.42 -0.47 16 36 H 0.13 0.12 8.06 -52.49 -0.42 -0.30 16 37 H 0.13 0.05 6.79 -52.49 -0.36 -0.31 16 38 H 0.08 -0.34 8.10 -51.93 -0.42 -0.76 16 39 H 0.11 -0.42 7.85 -51.93 -0.41 -0.82 16 40 H 0.38 -2.12 9.12 45.56 0.42 -1.70 16 41 H 0.11 -0.15 6.13 -51.93 -0.32 -0.46 16 42 H 0.09 0.27 7.03 -51.92 -0.37 -0.09 16 43 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 44 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 45 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 46 H 0.08 0.15 7.82 -51.93 -0.41 -0.26 16 LS Contribution 387.43 15.07 5.84 5.84 Total: 0.00 -9.35 387.43 -12.14 -21.49 By element: Atomic # 1 Polarization: -5.79 SS G_CDS: -5.28 Total: -11.08 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -4.05 Total: -3.95 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -0.48 Total: -1.57 kcal Atomic # 8 Polarization: -2.40 SS G_CDS: -0.82 Total: -3.22 kcal Atomic # 14 Polarization: -0.07 SS G_CDS: -5.04 Total: -5.11 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -2.29 Total: -2.40 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -9.35 -12.14 -21.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_15413834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.139 kcal (2) G-P(sol) polarization free energy of solvation -9.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds