Wall clock time and date at job start Sat Mar 6 2021 23:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47132 * 2 1 4 4 C 1.50698 * 109.47223 * 239.99325 * 2 1 3 5 5 C 1.38251 * 119.96872 * 119.99761 * 4 2 1 6 6 C 1.38286 * 120.10997 * 180.02562 * 5 4 2 7 7 C 1.38123 * 120.05527 * 0.02562 * 6 5 4 8 8 C 1.38750 * 119.94415 * 359.97438 * 7 6 5 9 9 O 1.35900 * 120.05244 * 179.97438 * 8 7 6 10 10 C 1.42898 * 117.00449 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.47321 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00054 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00003 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00049 * 185.22899 * 13 11 10 15 15 C 1.50700 * 112.90716 * 54.37806 * 14 13 11 16 16 C 1.38242 * 119.98935 * 215.70985 * 15 14 13 17 17 C 1.38219 * 120.01108 * 179.76446 * 16 15 14 18 18 C 1.38328 * 119.98756 * 0.50275 * 17 16 15 19 19 Br 1.89103 * 120.00974 * 179.76907 * 18 17 16 20 20 C 1.38323 * 119.97772 * 359.75210 * 18 17 16 21 21 C 1.38220 * 119.99612 * 359.97438 * 20 18 17 22 22 C 1.53779 * 113.61589 * 283.12142 * 14 13 11 23 23 C 1.53783 * 87.08068 * 270.88195 * 22 14 13 24 24 H 1.09000 * 113.61215 * 220.01592 * 23 22 14 25 25 O 1.42898 * 113.68962 * 89.13007 * 23 22 14 26 26 C 1.53777 * 87.08048 * 334.56765 * 23 22 14 27 27 C 1.38165 * 119.97435 * 300.26090 * 4 2 1 28 28 H 0.96705 * 114.00309 * 60.00018 * 1 2 3 29 29 H 1.09000 * 109.47166 * 119.99620 * 2 1 3 30 30 H 1.48498 * 110.00383 * 59.99550 * 3 2 1 31 31 H 1.48498 * 110.00013 * 181.32216 * 3 2 1 32 32 H 1.08005 * 119.94358 * 0.02562 * 5 4 2 33 33 H 1.07999 * 119.97051 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.02685 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47064 * 59.99447 * 10 9 8 36 36 H 1.09006 * 109.46929 * 299.99809 * 10 9 8 37 37 H 0.97004 * 119.99676 * 5.23755 * 13 11 10 38 38 H 1.07996 * 119.99254 * 0.02562 * 16 15 14 39 39 H 1.08002 * 120.00626 * 180.23634 * 17 16 15 40 40 H 1.08003 * 120.00657 * 179.97438 * 20 18 17 41 41 H 1.07991 * 119.99526 * 179.97438 * 21 20 18 42 42 H 1.09008 * 113.61122 * 156.33595 * 22 14 13 43 43 H 1.09000 * 113.61612 * 25.43181 * 22 14 13 44 44 H 0.96704 * 114.00385 * 82.45936 * 25 23 22 45 45 H 1.09007 * 113.61057 * 139.98156 * 26 23 22 46 46 H 1.09005 * 113.61405 * 270.87735 * 26 23 22 47 47 H 1.07994 * 120.02596 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7261 -0.0381 -2.1401 6 6 3.1882 -0.6871 -3.2703 7 6 2.8562 -2.0092 -3.4933 8 6 2.0587 -2.6862 -2.5818 9 8 1.7303 -3.9869 -2.7993 10 6 2.2413 -4.5953 -3.9870 11 6 1.7772 -6.0273 -4.0575 12 8 1.0779 -6.4822 -3.1772 13 7 2.1390 -6.8025 -5.0990 14 6 1.5961 -8.1570 -5.2275 15 6 0.0897 -8.1902 -5.1996 16 6 -0.5671 -9.2440 -4.5919 17 6 -1.9486 -9.2725 -4.5618 18 6 -2.6742 -8.2516 -5.1490 19 35 -4.5644 -8.2932 -5.1140 20 6 -2.0165 -7.2001 -5.7616 21 6 -0.6349 -7.1695 -5.7862 22 6 2.2524 -9.1761 -4.2811 23 6 3.2840 -9.4267 -5.3937 24 1 3.5571 -10.4758 -5.5076 25 8 4.4195 -8.5616 -5.3293 26 6 2.2085 -8.9587 -6.3881 27 6 1.5928 -2.0318 -1.4510 28 1 -0.3934 0.4417 -0.7651 29 1 1.7923 -0.5138 0.8900 30 1 1.5614 2.4680 1.2084 31 1 3.5345 1.7703 -0.0322 32 1 2.9864 0.9958 -1.9677 33 1 3.8086 -0.1596 -3.9797 34 1 3.2170 -2.5155 -4.3764 35 1 3.3308 -4.5673 -3.9697 36 1 1.8777 -4.0517 -4.8590 37 1 2.7591 -6.4634 -5.7635 38 1 -0.0005 -10.0430 -4.1369 39 1 -2.4616 -10.0939 -4.0837 40 1 -2.5826 -6.4029 -6.2206 41 1 -0.1215 -6.3488 -6.2648 42 1 1.6236 -10.0401 -4.0659 43 1 2.6784 -8.7273 -3.3837 44 1 5.0995 -8.8507 -4.7055 45 1 2.5990 -8.3344 -7.1918 46 1 1.5677 -9.7633 -6.7491 47 1 0.9688 -2.5554 -0.7421 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12891094_4860298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:46:36 Heat of formation + Delta-G solvation = -44.106573 kcal Electronic energy + Delta-G solvation = -33432.415078 eV Core-core repulsion = 28788.223094 eV Total energy + Delta-G solvation = -4644.191984 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 434.061 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -42.27487 -41.34568 -39.95094 -39.50275 -38.74760 -37.20411 -36.38681 -34.20934 -33.12101 -32.47887 -32.05577 -31.62878 -30.32777 -29.24795 -27.21534 -26.82138 -25.52912 -23.78851 -23.67872 -22.95913 -22.38974 -21.55506 -20.44320 -19.31595 -18.82892 -18.44444 -18.05291 -17.65557 -17.41697 -17.22205 -16.99593 -16.77973 -16.30313 -16.15499 -16.06594 -15.64870 -15.44220 -15.25045 -15.16644 -14.95325 -14.68330 -14.50634 -14.21652 -14.15863 -13.96809 -13.85537 -13.71528 -13.40075 -13.19962 -12.96051 -12.65169 -12.57295 -12.31641 -12.22622 -12.16859 -11.94266 -11.70240 -11.66208 -11.61097 -11.18139 -11.05903 -10.81002 -10.49132 -10.18690 -10.00228 -9.92306 -9.49978 -9.27589 -5.02849 0.05669 0.18917 0.33158 0.39125 0.72227 1.25599 1.41096 1.50237 1.63991 1.97563 2.45697 2.57238 2.66043 2.82206 3.28567 3.35570 3.40397 3.47672 3.52711 3.62562 3.63392 3.74080 3.84296 3.87524 3.89319 3.89407 4.00216 4.14337 4.17618 4.27919 4.36179 4.40086 4.46364 4.51505 4.53547 4.59588 4.60742 4.71423 4.76339 4.85219 4.95587 4.95884 5.17552 5.22219 5.22692 5.29062 5.33868 5.42539 5.55336 5.64124 5.78622 6.24196 6.38453 6.46068 6.59006 7.12219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.071 4.071 3 Si 0.694 3.306 4 C -0.080 4.080 5 C -0.155 4.155 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.130 3.870 9 O -0.287 6.287 10 C 0.042 3.958 11 C 0.517 3.483 12 O -0.497 6.497 13 N -0.699 5.699 14 C 0.201 3.799 15 C -0.054 4.054 16 C -0.102 4.102 17 C -0.086 4.086 18 C -0.089 4.089 19 Br -0.050 7.050 20 C -0.087 4.087 21 C -0.100 4.100 22 C -0.175 4.175 23 C 0.080 3.920 24 H 0.077 0.923 25 O -0.550 6.550 26 C -0.124 4.124 27 C -0.121 4.121 28 H 0.380 0.620 29 H 0.116 0.884 30 H -0.255 1.255 31 H -0.258 1.258 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.408 0.592 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.385 0.615 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.020 0.059 -6.322 8.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.182 4.182 3 Si 0.596 3.404 4 C -0.080 4.080 5 C -0.172 4.172 6 C -0.090 4.090 7 C -0.225 4.225 8 C 0.084 3.916 9 O -0.200 6.200 10 C -0.037 4.037 11 C 0.301 3.699 12 O -0.369 6.369 13 N -0.354 5.354 14 C 0.114 3.886 15 C -0.056 4.056 16 C -0.121 4.121 17 C -0.106 4.106 18 C -0.169 4.169 19 Br 0.035 6.965 20 C -0.107 4.107 21 C -0.119 4.119 22 C -0.214 4.214 23 C 0.021 3.979 24 H 0.094 0.906 25 O -0.356 6.356 26 C -0.161 4.161 27 C -0.140 4.140 28 H 0.227 0.773 29 H 0.133 0.867 30 H -0.180 1.180 31 H -0.183 1.183 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.244 0.756 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.234 0.766 45 H 0.107 0.893 46 H 0.132 0.868 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.890 0.220 -4.997 6.337 hybrid contribution 1.273 -0.680 0.040 1.444 sum 5.163 -0.460 -4.957 7.172 Atomic orbital electron populations 1.86524 1.16861 1.81713 1.49208 1.25135 0.85446 1.10256 0.97316 0.94630 0.80870 0.77761 0.87110 1.20162 0.97408 0.93830 0.96603 1.20946 1.00912 0.99861 0.95527 1.20905 0.97781 0.93662 0.96698 1.21295 1.03641 0.96648 1.00938 1.19042 0.94757 0.83013 0.94740 1.86174 1.70344 1.22569 1.40882 1.22441 1.00257 0.92241 0.88791 1.19986 0.80956 0.86806 0.82173 1.90809 1.35604 1.73842 1.36691 1.45379 1.48730 1.13684 1.27587 1.19824 0.88593 0.82313 0.97910 1.19738 0.94009 0.94874 0.96972 1.21028 0.93632 0.98672 0.98805 1.21107 0.93923 0.97584 0.97983 1.21837 0.90603 0.99297 1.05143 1.96769 1.02797 1.98849 1.98047 1.21083 0.94480 0.97026 0.98085 1.20856 0.93197 0.98327 0.99553 1.24212 0.98764 0.99514 0.98878 1.22680 0.85878 0.93527 0.95816 0.90562 1.86383 1.30654 1.52189 1.66398 1.23425 0.96139 1.00283 0.96264 1.20265 1.02736 0.93929 0.97033 0.77311 0.86695 1.17970 1.18278 0.85356 0.85088 0.85261 0.88836 0.88859 0.75596 0.84779 0.84781 0.84986 0.85755 0.87765 0.89734 0.76637 0.89302 0.86788 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.60 12.76 -35.23 -0.45 -1.05 16 2 C -0.07 -0.04 2.82 36.00 0.10 0.07 16 3 Si 0.69 -0.57 29.79 -169.99 -5.06 -5.63 16 4 C -0.08 -0.08 5.39 -104.64 -0.56 -0.64 16 5 C -0.15 0.04 8.67 -39.56 -0.34 -0.30 16 6 C -0.07 0.05 10.04 -39.61 -0.40 -0.34 16 7 C -0.21 0.03 9.04 -39.43 -0.36 -0.32 16 8 C 0.13 0.28 6.69 -39.22 -0.26 0.02 16 9 O -0.29 -0.94 9.67 -39.33 -0.38 -1.32 16 10 C 0.04 -0.02 5.22 36.01 0.19 0.16 16 11 C 0.52 0.72 7.13 -10.98 -0.08 0.64 16 12 O -0.50 -3.00 15.51 -14.35 -0.22 -3.23 16 13 N -0.70 0.98 4.14 -47.93 -0.20 0.79 16 14 C 0.20 -0.21 0.89 -132.16 -0.12 -0.32 16 15 C -0.05 -0.04 3.95 -104.62 -0.41 -0.46 16 16 C -0.10 -0.08 9.27 -39.59 -0.37 -0.45 16 17 C -0.09 -0.14 9.79 -39.55 -0.39 -0.52 16 18 C -0.09 -0.21 6.22 -39.52 -0.25 -0.46 16 19 Br -0.05 -0.12 33.70 -68.01 -2.29 -2.41 16 20 C -0.09 -0.16 9.79 -39.56 -0.39 -0.55 16 21 C -0.10 -0.11 8.94 -39.59 -0.35 -0.47 16 22 C -0.18 0.24 6.78 -25.92 -0.18 0.06 16 23 C 0.08 -0.23 5.27 -25.92 -0.14 -0.37 16 24 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 25 O -0.55 1.40 13.07 -35.23 -0.46 0.94 16 26 C -0.12 0.36 7.16 -25.92 -0.19 0.17 16 27 C -0.12 -0.32 9.55 -39.43 -0.38 -0.69 16 28 H 0.38 -1.08 8.70 45.56 0.40 -0.68 16 29 H 0.12 0.12 7.96 -51.93 -0.41 -0.30 16 30 H -0.25 -0.62 7.11 56.52 0.40 -0.22 16 31 H -0.26 -0.34 7.11 56.52 0.40 0.06 16 32 H 0.13 -0.28 4.87 -52.48 -0.26 -0.53 16 33 H 0.13 -0.41 8.06 -52.49 -0.42 -0.83 16 34 H 0.13 -0.35 6.30 -52.49 -0.33 -0.68 16 35 H 0.09 -0.26 7.66 -51.93 -0.40 -0.66 16 36 H 0.09 -0.29 7.66 -51.93 -0.40 -0.69 16 37 H 0.41 -1.49 8.61 -40.82 -0.35 -1.84 16 38 H 0.13 -0.16 5.67 -52.49 -0.30 -0.46 16 39 H 0.13 0.03 8.06 -52.49 -0.42 -0.40 16 40 H 0.13 0.08 8.06 -52.48 -0.42 -0.34 16 41 H 0.12 -0.05 7.73 -52.49 -0.41 -0.46 16 42 H 0.10 -0.24 5.66 -51.92 -0.29 -0.54 16 43 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.39 -2.11 9.12 45.56 0.42 -1.69 16 45 H 0.09 -0.28 8.10 -51.93 -0.42 -0.70 16 46 H 0.11 -0.42 8.09 -51.93 -0.42 -0.84 16 47 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 410.12 15.07 6.18 6.18 Total: 0.00 -10.72 410.12 -12.65 -23.37 By element: Atomic # 1 Polarization: -7.95 SS G_CDS: -4.91 Total: -12.85 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -4.86 Total: -4.77 kcal Atomic # 7 Polarization: 0.98 SS G_CDS: -0.20 Total: 0.79 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -1.51 Total: -4.66 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: -5.06 Total: -5.63 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -2.29 Total: -2.41 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -10.72 -12.65 -23.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_4860298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.735 kcal (2) G-P(sol) polarization free energy of solvation -10.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds