Wall clock time and date at job start Sat Mar 6 2021 23:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35968 * 117.00123 * 2 1 4 4 C 1.39450 * 120.12068 * 180.02562 * 3 2 1 5 5 O 1.34779 * 133.24386 * 359.97438 * 4 3 2 6 6 C 1.34918 * 110.84287 * 180.02562 * 5 4 3 7 7 C 1.46992 * 125.14117 * 180.02562 * 6 5 4 8 8 O 1.21656 * 120.00199 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99708 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99667 * 174.77292 * 9 7 6 11 11 C 1.50699 * 112.85156 * 291.98573 * 10 9 7 12 12 C 1.38234 * 119.99211 * 165.20238 * 11 10 9 13 13 C 1.38218 * 120.01211 * 179.72796 * 12 11 10 14 14 C 1.38323 * 119.98906 * 0.54793 * 13 12 11 15 15 Br 1.89102 * 120.01387 * 179.70376 * 14 13 12 16 16 C 1.38331 * 119.98093 * 359.72832 * 14 13 12 17 17 C 1.38217 * 119.98537 * 359.97438 * 16 14 13 18 18 C 1.53780 * 113.61286 * 160.68094 * 10 9 7 19 19 C 1.53777 * 87.08220 * 270.88567 * 18 10 9 20 20 H 1.09007 * 113.69213 * 220.01281 * 19 18 10 21 21 O 1.42891 * 113.61792 * 89.11669 * 19 18 10 22 22 C 1.53781 * 87.08237 * 334.56453 * 19 18 10 23 23 C 1.35816 * 109.72113 * 0.02562 * 6 5 4 24 24 C 1.40609 * 119.13782 * 180.02562 * 4 3 2 25 25 C 1.39778 * 120.11829 * 359.97438 * 24 4 3 26 26 C 1.50699 * 120.09527 * 180.02562 * 25 24 4 27 27 O 1.42901 * 109.47045 * 284.99436 * 26 25 24 28 28 Si 1.86298 * 109.47178 * 164.99503 * 26 25 24 29 29 C 1.36635 * 119.80965 * 359.97438 * 25 24 4 30 30 C 1.38258 * 120.11868 * 359.72174 * 3 2 1 31 31 H 1.09000 * 109.46766 * 60.00193 * 1 2 3 32 32 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46595 * 300.00223 * 1 2 3 34 34 H 0.96991 * 119.99937 * 354.77178 * 9 7 6 35 35 H 1.08002 * 119.99360 * 359.97438 * 12 11 10 36 36 H 1.07997 * 120.00707 * 180.30002 * 13 12 11 37 37 H 1.08000 * 120.00857 * 180.02562 * 16 14 13 38 38 H 1.08000 * 119.99677 * 179.97438 * 17 16 14 39 39 H 1.09004 * 113.61457 * 25.43452 * 18 10 9 40 40 H 1.09000 * 113.61312 * 156.33245 * 18 10 9 41 41 H 0.96698 * 114.00737 * 82.50541 * 21 19 18 42 42 H 1.08998 * 113.61944 * 270.88654 * 22 19 18 43 43 H 1.09001 * 113.68855 * 139.98819 * 22 19 18 44 44 H 1.08002 * 126.95302 * 179.97438 * 23 6 5 45 45 H 1.08994 * 109.47052 * 44.99766 * 26 25 24 46 46 H 0.96693 * 114.00068 * 300.00339 * 27 26 25 47 47 H 1.48504 * 110.00268 * 179.97438 * 28 26 25 48 48 H 1.48501 * 110.00290 * 301.31968 * 28 26 25 49 49 H 1.08008 * 119.74896 * 179.97438 * 29 25 24 50 50 H 1.08001 * 119.66403 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2874 -0.0005 5 8 4.4142 0.3573 -0.0007 6 6 5.6317 0.9385 -0.0007 7 6 6.9131 0.2183 -0.0014 8 8 7.9596 0.8387 -0.0009 9 7 6.9286 -1.1294 -0.0026 10 6 8.2005 -1.8471 -0.1188 11 6 8.8448 -1.6809 -1.4709 12 6 10.1709 -2.0267 -1.6516 13 6 10.7608 -1.8796 -2.8930 14 6 10.0270 -1.3757 -3.9518 15 35 10.8357 -1.1664 -5.6483 16 6 8.7016 -1.0244 -3.7691 17 6 8.1109 -1.1776 -2.5289 18 6 8.1290 -3.3080 0.3561 19 6 8.4895 -2.7877 1.7575 20 1 9.1893 -3.4273 2.2955 21 8 7.3527 -2.4247 2.5434 22 6 9.1600 -1.5946 1.0561 23 6 5.4945 2.2897 0.0000 24 6 4.0555 2.5509 0.0000 25 6 3.2767 3.7116 0.0006 26 6 3.9383 5.0656 0.0006 27 8 4.4611 5.3403 1.3019 28 14 2.6864 6.3685 -0.4534 29 6 1.9137 3.6150 0.0000 30 6 1.2957 2.3726 -0.0058 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 6.0978 -1.6240 0.0736 35 1 10.7451 -2.4155 -0.8237 36 1 11.7955 -2.1543 -3.0352 37 1 8.1282 -0.6313 -4.5956 38 1 7.0763 -0.9030 -2.3860 39 1 7.1296 -3.7389 0.2941 40 1 8.8947 -3.9477 -0.0826 41 1 6.9267 -3.1708 2.9871 42 1 10.2077 -1.7659 0.8088 43 1 8.9939 -0.6416 1.5584 44 1 6.2875 3.0229 0.0005 45 1 4.7504 5.0732 -0.7263 46 1 3.7926 5.3493 2.0004 47 1 3.3263 7.7086 -0.4563 48 1 2.1118 6.0766 -1.7913 49 1 1.3128 4.5125 0.0009 50 1 0.2174 2.3120 -0.0108 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_6672420.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:47:12 Heat of formation + Delta-G solvation = -39.224914 kcal Electronic energy + Delta-G solvation = -39903.903374 eV Core-core repulsion = 34684.788602 eV Total energy + Delta-G solvation = -5219.114772 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 474.060 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -43.81097 -42.25153 -40.72784 -39.97275 -39.39768 -39.08779 -37.02454 -36.39132 -34.34437 -33.69203 -33.23071 -32.11817 -31.89460 -31.00719 -30.36067 -28.57189 -27.05665 -26.48911 -26.05801 -24.69828 -24.02052 -23.88031 -22.57052 -22.01546 -21.77942 -20.42048 -19.89091 -19.06180 -18.73934 -18.59906 -17.97542 -17.79296 -17.69456 -17.16208 -16.95452 -16.57976 -16.48637 -16.25338 -16.19901 -15.87686 -15.81186 -15.76263 -15.31458 -15.03206 -14.72979 -14.63963 -14.55942 -14.49312 -14.42113 -14.19188 -13.81636 -13.60012 -13.45332 -13.35513 -13.28933 -13.10054 -12.65641 -12.49602 -12.42009 -12.33634 -12.30678 -12.10473 -11.93106 -11.81228 -11.73678 -11.36031 -11.23496 -11.07863 -11.00751 -10.46535 -10.30610 -10.13037 -9.86634 -9.63108 -9.03189 -5.02013 -0.71248 -0.07399 0.07564 0.20061 0.54706 0.57706 1.12730 1.28390 1.66690 1.78515 1.84656 1.98720 2.11795 2.37403 2.42244 3.05676 3.13599 3.37123 3.39774 3.45403 3.57010 3.60276 3.66214 3.67580 3.73506 3.81695 3.82059 3.84668 3.96825 4.15103 4.20120 4.28846 4.32860 4.35261 4.38434 4.42707 4.43124 4.54020 4.63436 4.74493 4.76526 4.78340 4.78613 4.80974 4.83893 4.92986 4.97668 5.01884 5.06714 5.10866 5.18678 5.21014 5.31444 5.47370 5.55871 5.68105 6.15090 6.26385 6.76886 6.79131 6.89353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.333 6.333 3 C 0.137 3.863 4 C 0.019 3.981 5 O -0.180 6.180 6 C -0.031 4.031 7 C 0.606 3.394 8 O -0.532 6.532 9 N -0.675 5.675 10 C 0.183 3.817 11 C -0.063 4.063 12 C -0.103 4.103 13 C -0.089 4.089 14 C -0.104 4.104 15 Br -0.054 7.054 16 C -0.099 4.099 17 C -0.114 4.114 18 C -0.145 4.145 19 C 0.086 3.914 20 H 0.101 0.899 21 O -0.569 6.569 22 C -0.139 4.139 23 C -0.119 4.119 24 C -0.098 4.098 25 C -0.109 4.109 26 C -0.082 4.082 27 O -0.555 6.555 28 Si 0.799 3.201 29 C -0.078 4.078 30 C -0.165 4.165 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.417 0.583 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.133 0.867 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.398 0.602 42 H 0.126 0.874 43 H 0.057 0.943 44 H 0.165 0.835 45 H 0.095 0.905 46 H 0.396 0.604 47 H -0.301 1.301 48 H -0.279 1.279 49 H 0.177 0.823 50 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.390 -4.677 4.015 10.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.091 3.909 4 C -0.029 4.029 5 O -0.082 6.082 6 C -0.082 4.082 7 C 0.391 3.609 8 O -0.411 6.411 9 N -0.325 5.325 10 C 0.097 3.903 11 C -0.065 4.065 12 C -0.122 4.122 13 C -0.109 4.109 14 C -0.184 4.184 15 Br 0.031 6.969 16 C -0.118 4.118 17 C -0.133 4.133 18 C -0.183 4.183 19 C 0.027 3.973 20 H 0.119 0.881 21 O -0.377 6.377 22 C -0.177 4.177 23 C -0.140 4.140 24 C -0.099 4.099 25 C -0.110 4.110 26 C -0.190 4.190 27 O -0.363 6.363 28 Si 0.703 3.297 29 C -0.095 4.095 30 C -0.183 4.183 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.255 0.745 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.151 0.849 38 H 0.136 0.864 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.249 0.751 42 H 0.144 0.856 43 H 0.076 0.924 44 H 0.183 0.817 45 H 0.112 0.888 46 H 0.246 0.754 47 H -0.229 1.229 48 H -0.205 1.205 49 H 0.193 0.807 50 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.832 -3.467 2.268 7.990 hybrid contribution -0.112 -0.739 0.057 0.749 sum -6.944 -4.206 2.325 8.445 Atomic orbital electron populations 1.23501 0.75227 1.06037 1.03262 1.86147 1.24394 1.25777 1.88433 1.17993 0.85952 0.86997 0.99946 1.19250 0.88366 0.87005 1.08244 1.84013 1.12656 1.35044 1.76453 1.21984 0.84133 0.92682 1.09359 1.16617 0.85004 0.82648 0.76595 1.90894 1.31115 1.68155 1.50901 1.45307 1.10235 1.04559 1.72388 1.20200 0.84112 0.95124 0.90897 1.20096 0.94617 0.97334 0.94409 1.21221 0.93542 0.99810 0.97592 1.21368 1.00769 0.97284 0.91477 1.21962 0.96276 1.07284 0.92835 1.96748 1.81412 1.96826 1.21921 1.21193 0.93524 0.98932 0.98192 1.20983 1.00218 0.99675 0.92468 1.24057 1.05496 0.92140 0.96616 1.22733 0.88412 0.95660 0.90523 0.88143 1.86496 1.45254 1.39407 1.66556 1.23646 0.99793 0.99523 0.94690 1.22801 0.95535 0.94407 1.01225 1.19580 0.92153 0.93057 1.05124 1.19689 0.93838 0.93862 1.03608 1.25395 1.05862 0.98785 0.88996 1.86504 1.39704 1.93362 1.16775 0.93836 0.80270 0.73009 0.82625 1.20799 0.92339 0.98685 0.97702 1.21440 1.02012 0.89470 1.05396 0.90691 0.86688 0.90370 0.74539 0.81930 0.83053 0.84896 0.86395 0.88730 0.85276 0.75127 0.85569 0.92371 0.81716 0.88775 0.75435 1.22878 1.20549 0.80661 0.79784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.86 10.50 -93.19 -0.98 -1.84 16 3 C 0.14 0.47 6.70 22.57 0.15 0.62 16 4 C 0.02 0.17 7.35 23.14 0.17 0.34 16 5 O -0.18 -1.81 10.29 -13.34 -0.14 -1.95 16 6 C -0.03 -0.34 7.07 24.00 0.17 -0.17 16 7 C 0.61 6.39 6.31 86.54 0.55 6.93 16 8 O -0.53 -8.64 15.27 -4.21 -0.06 -8.70 16 9 N -0.67 -2.83 3.76 -427.53 -1.61 -4.44 16 10 C 0.18 0.21 0.94 3.38 0.00 0.21 16 11 C -0.06 -0.21 4.84 -19.86 -0.10 -0.31 16 12 C -0.10 -0.05 8.80 22.26 0.20 0.14 16 13 C -0.09 -0.22 9.79 22.29 0.22 0.00 16 14 C -0.10 -0.60 6.22 22.31 0.14 -0.46 16 15 Br -0.05 -0.31 33.70 -20.37 -0.69 -0.99 16 16 C -0.10 -0.65 9.79 22.29 0.22 -0.43 16 17 C -0.11 -0.73 8.97 22.27 0.20 -0.53 16 18 C -0.15 0.84 7.13 31.12 0.22 1.06 16 19 C 0.09 -0.34 5.28 31.12 0.16 -0.17 16 20 H 0.10 -0.84 8.14 -2.38 -0.02 -0.86 16 21 O -0.57 0.48 13.08 -148.98 -1.95 -1.47 16 22 C -0.14 -0.19 6.56 31.12 0.20 0.02 16 23 C -0.12 -1.30 10.68 23.79 0.25 -1.04 16 24 C -0.10 -0.79 6.16 -20.25 -0.12 -0.92 16 25 C -0.11 -0.26 5.26 -19.87 -0.10 -0.36 16 26 C -0.08 -0.13 2.71 71.24 0.19 0.06 16 27 O -0.56 -1.51 12.88 -148.98 -1.92 -3.43 16 28 Si 0.80 -2.47 29.92 68.60 2.05 -0.42 16 29 C -0.08 0.29 8.62 22.02 0.19 0.48 16 30 C -0.16 0.58 9.03 22.40 0.20 0.78 16 31 H 0.07 -0.76 7.65 -2.39 -0.02 -0.78 16 32 H 0.11 -1.09 8.14 -2.39 -0.02 -1.11 16 33 H 0.08 -0.83 7.67 -2.38 -0.02 -0.85 16 34 H 0.42 0.63 8.40 -92.72 -0.78 -0.15 16 35 H 0.16 -0.96 6.45 -2.91 -0.02 -0.97 16 36 H 0.15 -0.20 8.06 -2.91 -0.02 -0.22 16 37 H 0.13 0.68 8.06 -2.91 -0.02 0.65 16 38 H 0.12 0.79 6.78 -2.91 -0.02 0.77 16 39 H 0.09 -0.67 8.10 -2.38 -0.02 -0.69 16 40 H 0.13 -1.20 7.84 -2.39 -0.02 -1.22 16 41 H 0.40 -3.74 9.12 -74.06 -0.68 -4.42 16 42 H 0.13 -0.39 6.14 -2.39 -0.01 -0.41 16 43 H 0.06 0.54 7.01 -2.39 -0.02 0.53 16 44 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.09 0.45 7.96 -2.39 -0.02 0.43 16 46 H 0.40 -2.53 8.70 -74.06 -0.64 -3.18 16 47 H -0.30 -1.51 7.11 99.48 0.71 -0.80 16 48 H -0.28 -0.29 7.11 99.48 0.71 0.42 16 49 H 0.18 -2.00 5.07 -2.91 -0.01 -2.02 16 50 H 0.19 -2.06 6.26 -2.91 -0.02 -2.08 16 Total: 0.00 -29.06 435.23 -2.05 -31.12 By element: Atomic # 1 Polarization: -14.16 SS G_CDS: -0.99 Total: -15.15 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 4.23 Total: 7.26 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -1.61 Total: -4.44 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -5.05 Total: -17.39 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: 2.05 Total: -0.42 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -0.69 Total: -0.99 kcal Total: -29.06 -2.05 -31.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_6672420.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.109 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds