Wall clock time and date at job start Sat Mar 6 2021 23:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47077 * 2 1 4 4 C 1.50697 * 109.47588 * 120.00107 * 2 1 3 5 5 C 1.32773 * 124.71224 * 64.99713 * 4 2 1 6 6 C 1.44423 * 113.08166 * 180.02562 * 5 4 2 7 7 C 1.47192 * 123.45611 * 180.02562 * 6 5 4 8 8 O 1.21638 * 120.00532 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00007 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00216 * 184.97319 * 9 7 6 11 11 C 1.50696 * 112.84874 * 294.36993 * 10 9 7 12 12 C 1.38251 * 119.98947 * 164.58080 * 11 10 9 13 13 C 1.38215 * 120.00826 * 180.02562 * 12 11 10 14 14 C 1.38321 * 119.99151 * 0.26206 * 13 12 11 15 15 Br 1.89103 * 120.00928 * 179.72245 * 14 13 12 16 16 C 1.38325 * 119.98080 * 359.45911 * 14 13 12 17 17 C 1.38215 * 119.98916 * 0.56465 * 16 14 13 18 18 C 1.53784 * 113.61554 * 163.17661 * 10 9 7 19 19 C 1.53783 * 87.08240 * 270.80232 * 18 10 9 20 20 H 1.08994 * 113.61205 * 219.93600 * 19 18 10 21 21 O 1.42896 * 113.61412 * 89.11425 * 19 18 10 22 22 C 1.53777 * 113.61617 * 65.56974 * 10 9 7 23 23 C 1.36005 * 113.07833 * 0.26575 * 6 5 4 24 24 S 1.70445 * 110.82030 * 359.59476 * 23 6 5 25 25 H 0.96694 * 113.99930 * 299.99901 * 1 2 3 26 26 H 1.09009 * 109.47134 * 240.00147 * 2 1 3 27 27 H 1.48508 * 109.99846 * 300.00077 * 3 2 1 28 28 H 1.48495 * 110.00014 * 61.31705 * 3 2 1 29 29 H 1.08004 * 123.45419 * 359.97438 * 5 4 2 30 30 H 0.97006 * 119.99963 * 4.97499 * 9 7 6 31 31 H 1.07994 * 119.99389 * 0.02562 * 12 11 10 32 32 H 1.08004 * 119.99978 * 179.97438 * 13 12 11 33 33 H 1.08001 * 120.00678 * 180.25324 * 16 14 13 34 34 H 1.07999 * 119.99655 * 179.72089 * 17 16 14 35 35 H 1.09003 * 113.61173 * 25.35021 * 18 10 9 36 36 H 1.08997 * 113.61481 * 156.16387 * 18 10 9 37 37 H 0.96704 * 113.99561 * 180.02562 * 21 19 18 38 38 H 1.09000 * 113.61437 * 203.75117 * 22 10 9 39 39 H 1.09008 * 113.61280 * 334.65042 * 22 10 9 40 40 H 1.08008 * 124.58473 * 179.71256 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 1.2304 5 6 1.7486 -2.0003 1.4863 6 6 2.3358 -2.4180 2.7379 7 6 2.2696 -3.7984 3.2447 8 8 1.6972 -4.6563 2.5998 9 7 2.8432 -4.1118 4.4234 10 6 2.8727 -5.5046 4.8763 11 6 1.5000 -6.0553 5.1650 12 6 1.3149 -7.4197 5.2897 13 6 0.0560 -7.9252 5.5540 14 6 -1.0198 -7.0662 5.6884 15 35 -2.7439 -7.7578 6.0422 16 6 -0.8332 -5.7008 5.5693 17 6 0.4260 -5.1961 5.3045 18 6 3.8900 -5.7657 5.9997 19 6 4.9201 -6.0498 4.8937 20 1 5.5808 -6.8873 5.1172 21 8 5.6263 -4.8869 4.4569 22 6 3.7308 -6.4226 3.9898 23 6 2.9516 -1.4038 3.4027 24 16 2.8389 0.0526 2.5244 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5138 -0.8901 27 1 1.5614 2.4679 -1.2086 28 1 1.5879 2.4586 1.2242 29 1 1.2149 -2.6684 0.8266 30 1 3.2364 -3.4150 4.9719 31 1 2.1542 -8.0905 5.1806 32 1 -0.0885 -8.9911 5.6510 33 1 -1.6722 -5.0294 5.6782 34 1 0.5710 -4.1304 5.2070 35 1 4.1203 -4.8816 6.5943 36 1 3.6519 -6.6364 6.6106 37 1 6.2754 -5.0592 3.7611 38 1 3.4499 -7.4741 4.0493 39 1 3.8328 -6.0681 2.9641 40 1 3.4468 -1.5077 4.3569 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12891094_6894386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:47:24 Heat of formation + Delta-G solvation = -9.208670 kcal Electronic energy + Delta-G solvation = -28131.387509 eV Core-core repulsion = 24052.080869 eV Total energy + Delta-G solvation = -4079.306640 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.002 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.22938 -40.17641 -39.47125 -38.70688 -37.14175 -36.32832 -34.16670 -33.09499 -32.04739 -31.56033 -30.22013 -27.13412 -26.98263 -26.42906 -24.89480 -23.77294 -22.56782 -22.03631 -20.61955 -20.31090 -19.02178 -18.74395 -18.03613 -17.95859 -17.64855 -16.95900 -16.40225 -16.35884 -16.01610 -15.80357 -15.70004 -15.40262 -15.34337 -14.97552 -14.47533 -14.43548 -14.23185 -14.04308 -13.83835 -13.75104 -13.54487 -13.37670 -13.14398 -12.71074 -12.62886 -12.41050 -12.31230 -12.22634 -11.82375 -11.69070 -11.52709 -11.16930 -11.04378 -10.84653 -10.69243 -10.14289 -10.01823 -9.97416 -9.53513 -9.45341 -5.12992 -0.36355 0.08771 0.33053 0.35464 0.67554 0.73345 0.90822 1.16545 1.49021 1.84870 1.98302 2.37661 2.55508 2.87026 3.23325 3.32242 3.47053 3.50139 3.57406 3.65095 3.77148 3.86384 3.92421 4.02381 4.19580 4.28650 4.33242 4.42701 4.44416 4.47953 4.56151 4.64647 4.70843 4.75081 4.80963 4.91450 4.97095 5.02835 5.20670 5.21083 5.24557 5.34562 5.64671 5.81029 6.28135 6.45748 6.52092 7.24995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.033 4.033 3 Si 0.649 3.351 4 C -0.242 4.242 5 C -0.052 4.052 6 C -0.155 4.155 7 C 0.580 3.420 8 O -0.519 6.519 9 N -0.697 5.697 10 C 0.199 3.801 11 C -0.055 4.055 12 C -0.108 4.108 13 C -0.088 4.088 14 C -0.091 4.091 15 Br -0.051 7.051 16 C -0.088 4.088 17 C -0.092 4.092 18 C -0.125 4.125 19 C 0.081 3.919 20 H 0.076 0.924 21 O -0.548 6.548 22 C -0.167 4.167 23 C -0.203 4.203 24 S 0.196 5.804 25 H 0.377 0.623 26 H 0.127 0.873 27 H -0.234 1.234 28 H -0.238 1.238 29 H 0.155 0.845 30 H 0.404 0.596 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.384 0.616 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 2.007 2.476 7.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.329 6.329 2 C -0.145 4.145 3 Si 0.548 3.452 4 C -0.359 4.359 5 C -0.082 4.082 6 C -0.173 4.173 7 C 0.366 3.634 8 O -0.395 6.395 9 N -0.349 5.349 10 C 0.111 3.889 11 C -0.057 4.057 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.170 4.170 15 Br 0.034 6.966 16 C -0.107 4.107 17 C -0.111 4.111 18 C -0.162 4.162 19 C 0.021 3.979 20 H 0.094 0.906 21 O -0.354 6.354 22 C -0.206 4.206 23 C -0.341 4.341 24 S 0.462 5.538 25 H 0.225 0.775 26 H 0.145 0.855 27 H -0.157 1.157 28 H -0.162 1.162 29 H 0.173 0.827 30 H 0.240 0.760 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.232 0.768 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.779 3.436 2.278 7.099 hybrid contribution -0.658 -1.477 0.127 1.622 sum 5.121 1.959 2.405 5.987 Atomic orbital electron populations 1.86649 1.17169 1.79877 1.49187 1.24401 0.83871 1.10062 0.96165 0.95266 0.91853 0.74983 0.83141 1.24729 1.09669 0.98517 1.02957 1.21046 0.97668 0.94405 0.95045 1.20237 1.05759 0.93975 0.97309 1.17565 0.78148 0.87119 0.80615 1.90854 1.41853 1.49538 1.57277 1.45355 1.60313 1.07882 1.21378 1.19838 0.90638 0.82274 0.96131 1.19862 0.94601 0.93557 0.97658 1.20910 0.97036 0.94350 1.00372 1.21074 0.91447 0.99754 0.98462 1.21819 0.91866 0.95563 1.07769 1.96763 1.19167 1.86351 1.94306 1.21096 0.97917 0.93375 0.98359 1.20875 0.91664 0.99903 0.98702 1.23437 0.92978 1.04149 0.95641 1.22720 0.92051 0.88280 0.94814 0.90623 1.86409 1.56761 1.32684 1.59518 1.24150 0.95822 1.00215 1.00396 1.25810 1.04737 0.98450 1.05145 1.83164 1.50453 1.09194 1.10945 0.77474 0.85493 1.15716 1.16220 0.82711 0.76030 0.84952 0.84788 0.85107 0.85877 0.89441 0.86847 0.76769 0.87965 0.89633 0.81138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.55 12.88 -35.23 -0.45 -1.00 16 2 C -0.03 0.02 2.94 36.00 0.11 0.12 16 3 Si 0.65 -0.97 30.92 -169.99 -5.26 -6.22 16 4 C -0.24 0.04 5.65 -36.18 -0.20 -0.16 16 5 C -0.05 -0.08 9.95 -39.02 -0.39 -0.47 16 6 C -0.15 -0.15 5.98 -104.63 -0.63 -0.77 16 7 C 0.58 1.29 6.25 -12.62 -0.08 1.21 16 8 O -0.52 -3.06 15.22 5.24 0.08 -2.98 16 9 N -0.70 0.25 3.79 -49.06 -0.19 0.07 16 10 C 0.20 -0.08 0.93 -132.16 -0.12 -0.21 16 11 C -0.06 -0.06 4.58 -104.62 -0.48 -0.54 16 12 C -0.11 -0.06 8.83 -39.59 -0.35 -0.41 16 13 C -0.09 -0.12 9.79 -39.56 -0.39 -0.51 16 14 C -0.09 -0.23 6.22 -39.52 -0.25 -0.48 16 15 Br -0.05 -0.13 33.70 -68.01 -2.29 -2.42 16 16 C -0.09 -0.21 9.79 -39.56 -0.39 -0.60 16 17 C -0.09 -0.20 8.59 -39.59 -0.34 -0.54 16 18 C -0.12 0.30 7.13 -25.92 -0.18 0.11 16 19 C 0.08 -0.19 5.28 -25.82 -0.14 -0.33 16 20 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 21 O -0.55 1.03 13.09 -35.23 -0.46 0.57 16 22 C -0.17 0.13 6.67 -25.83 -0.17 -0.05 16 23 C -0.20 0.29 10.38 29.93 0.31 0.60 16 24 S 0.20 -0.34 20.20 -107.50 -2.17 -2.51 16 25 H 0.38 -0.71 8.70 45.56 0.40 -0.31 16 26 H 0.13 -0.15 7.96 -51.92 -0.41 -0.57 16 27 H -0.23 -0.34 7.11 56.52 0.40 0.07 16 28 H -0.24 0.02 7.11 56.52 0.40 0.42 16 29 H 0.16 0.41 8.06 -52.48 -0.42 -0.01 16 30 H 0.40 -0.90 7.17 -40.82 -0.29 -1.20 16 31 H 0.13 -0.26 6.41 -52.49 -0.34 -0.59 16 32 H 0.13 -0.01 8.06 -52.48 -0.42 -0.44 16 33 H 0.13 0.19 8.06 -52.49 -0.42 -0.24 16 34 H 0.12 0.20 6.75 -52.49 -0.35 -0.16 16 35 H 0.09 -0.22 8.09 -51.93 -0.42 -0.64 16 36 H 0.11 -0.40 7.86 -51.93 -0.41 -0.81 16 37 H 0.38 -1.85 9.12 45.56 0.42 -1.43 16 38 H 0.10 -0.18 6.11 -51.93 -0.32 -0.50 16 39 H 0.09 0.13 7.53 -51.92 -0.39 -0.26 16 40 H 0.17 -0.66 7.02 -52.48 -0.37 -1.03 16 LS Contribution 368.00 15.07 5.55 5.55 Total: 0.00 -8.11 368.00 -12.26 -20.37 By element: Atomic # 1 Polarization: -5.02 SS G_CDS: -3.38 Total: -8.40 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -3.69 Total: -3.01 kcal Atomic # 7 Polarization: 0.25 SS G_CDS: -0.19 Total: 0.07 kcal Atomic # 8 Polarization: -2.58 SS G_CDS: -0.84 Total: -3.41 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: -5.26 Total: -6.22 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.17 Total: -2.51 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -2.29 Total: -2.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -8.11 -12.26 -20.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_6894386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.158 kcal (2) G-P(sol) polarization free energy of solvation -8.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds