Wall clock time and date at job start Sat Mar 6 2021 23:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47077 * 2 1 4 4 C 1.50697 * 109.47588 * 120.00107 * 2 1 3 5 5 C 1.32773 * 124.71224 * 64.99713 * 4 2 1 6 6 C 1.44423 * 113.08166 * 180.02562 * 5 4 2 7 7 C 1.47192 * 123.45611 * 180.02562 * 6 5 4 8 8 O 1.21638 * 120.00532 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00007 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00216 * 184.97319 * 9 7 6 11 11 C 1.50696 * 112.84874 * 294.36993 * 10 9 7 12 12 C 1.38251 * 119.98947 * 164.58080 * 11 10 9 13 13 C 1.38215 * 120.00826 * 180.02562 * 12 11 10 14 14 C 1.38321 * 119.99151 * 0.26206 * 13 12 11 15 15 Br 1.89103 * 120.00928 * 179.72245 * 14 13 12 16 16 C 1.38325 * 119.98080 * 359.45911 * 14 13 12 17 17 C 1.38215 * 119.98916 * 0.56465 * 16 14 13 18 18 C 1.53784 * 113.61554 * 163.17661 * 10 9 7 19 19 C 1.53783 * 87.08240 * 270.80232 * 18 10 9 20 20 H 1.08994 * 113.61205 * 219.93600 * 19 18 10 21 21 O 1.42896 * 113.61412 * 89.11425 * 19 18 10 22 22 C 1.53777 * 113.61617 * 65.56974 * 10 9 7 23 23 C 1.36005 * 113.07833 * 0.26575 * 6 5 4 24 24 S 1.70445 * 110.82030 * 359.59476 * 23 6 5 25 25 H 0.96694 * 113.99930 * 299.99901 * 1 2 3 26 26 H 1.09009 * 109.47134 * 240.00147 * 2 1 3 27 27 H 1.48508 * 109.99846 * 300.00077 * 3 2 1 28 28 H 1.48495 * 110.00014 * 61.31705 * 3 2 1 29 29 H 1.08004 * 123.45419 * 359.97438 * 5 4 2 30 30 H 0.97006 * 119.99963 * 4.97499 * 9 7 6 31 31 H 1.07994 * 119.99389 * 0.02562 * 12 11 10 32 32 H 1.08004 * 119.99978 * 179.97438 * 13 12 11 33 33 H 1.08001 * 120.00678 * 180.25324 * 16 14 13 34 34 H 1.07999 * 119.99655 * 179.72089 * 17 16 14 35 35 H 1.09003 * 113.61173 * 25.35021 * 18 10 9 36 36 H 1.08997 * 113.61481 * 156.16387 * 18 10 9 37 37 H 0.96704 * 113.99561 * 180.02562 * 21 19 18 38 38 H 1.09000 * 113.61437 * 203.75117 * 22 10 9 39 39 H 1.09008 * 113.61280 * 334.65042 * 22 10 9 40 40 H 1.08008 * 124.58473 * 179.71256 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 1.2304 5 6 1.7486 -2.0003 1.4863 6 6 2.3358 -2.4180 2.7379 7 6 2.2696 -3.7984 3.2447 8 8 1.6972 -4.6563 2.5998 9 7 2.8432 -4.1118 4.4234 10 6 2.8727 -5.5046 4.8763 11 6 1.5000 -6.0553 5.1650 12 6 1.3149 -7.4197 5.2897 13 6 0.0560 -7.9252 5.5540 14 6 -1.0198 -7.0662 5.6884 15 35 -2.7439 -7.7578 6.0422 16 6 -0.8332 -5.7008 5.5693 17 6 0.4260 -5.1961 5.3045 18 6 3.8900 -5.7657 5.9997 19 6 4.9201 -6.0498 4.8937 20 1 5.5808 -6.8873 5.1172 21 8 5.6263 -4.8869 4.4569 22 6 3.7308 -6.4226 3.9898 23 6 2.9516 -1.4038 3.4027 24 16 2.8389 0.0526 2.5244 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5138 -0.8901 27 1 1.5614 2.4679 -1.2086 28 1 1.5879 2.4586 1.2242 29 1 1.2149 -2.6684 0.8266 30 1 3.2364 -3.4150 4.9719 31 1 2.1542 -8.0905 5.1806 32 1 -0.0885 -8.9911 5.6510 33 1 -1.6722 -5.0294 5.6782 34 1 0.5710 -4.1304 5.2070 35 1 4.1203 -4.8816 6.5943 36 1 3.6519 -6.6364 6.6106 37 1 6.2754 -5.0592 3.7611 38 1 3.4499 -7.4741 4.0493 39 1 3.8328 -6.0681 2.9641 40 1 3.4468 -1.5077 4.3569 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891094_6894386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:47:23 Heat of formation + Delta-G solvation = -8.704879 kcal Electronic energy + Delta-G solvation = -28131.365663 eV Core-core repulsion = 24052.080869 eV Total energy + Delta-G solvation = -4079.284794 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.002 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.21083 -40.24213 -39.45572 -38.74529 -37.18163 -36.24186 -34.19611 -33.18006 -32.11332 -31.56133 -30.31636 -27.01567 -26.96125 -26.42195 -24.88403 -23.84410 -22.59549 -22.01703 -20.57716 -20.34098 -18.97906 -18.68313 -18.02983 -17.93205 -17.62145 -16.95725 -16.40936 -16.37076 -16.08257 -15.89819 -15.73410 -15.38486 -15.28588 -14.97213 -14.52108 -14.47423 -14.28891 -14.05565 -13.76687 -13.68860 -13.51281 -13.33020 -13.12430 -12.68785 -12.58845 -12.44363 -12.31112 -12.29067 -11.85244 -11.64220 -11.52147 -11.33943 -11.03905 -10.80849 -10.71538 -10.18387 -10.07140 -9.99421 -9.57425 -9.44552 -5.04392 -0.33049 -0.01015 0.25690 0.39247 0.58156 0.69968 0.83420 1.21848 1.54923 1.89811 2.00455 2.29046 2.48317 3.10663 3.29447 3.45165 3.54109 3.55888 3.62741 3.73334 3.81510 3.86069 3.95067 4.04400 4.24544 4.28935 4.36845 4.40389 4.48816 4.59451 4.67604 4.71313 4.78906 4.83509 4.87986 4.97705 4.99674 5.01402 5.13148 5.14993 5.17001 5.31505 5.62713 5.74068 6.39168 6.47568 6.85595 7.19217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.047 4.047 3 Si 0.729 3.271 4 C -0.245 4.245 5 C -0.074 4.074 6 C -0.180 4.180 7 C 0.580 3.420 8 O -0.567 6.567 9 N -0.684 5.684 10 C 0.188 3.812 11 C -0.058 4.058 12 C -0.108 4.108 13 C -0.094 4.094 14 C -0.106 4.106 15 Br -0.057 7.057 16 C -0.102 4.102 17 C -0.106 4.106 18 C -0.116 4.116 19 C 0.089 3.911 20 H 0.096 0.904 21 O -0.561 6.561 22 C -0.170 4.170 23 C -0.190 4.190 24 S 0.247 5.753 25 H 0.388 0.612 26 H 0.128 0.872 27 H -0.276 1.276 28 H -0.249 1.249 29 H 0.130 0.870 30 H 0.414 0.586 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.396 0.604 38 H 0.111 0.889 39 H 0.058 0.942 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 2.533 3.906 10.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.158 4.158 3 Si 0.629 3.371 4 C -0.362 4.362 5 C -0.104 4.104 6 C -0.198 4.198 7 C 0.367 3.633 8 O -0.446 6.446 9 N -0.335 5.335 10 C 0.101 3.899 11 C -0.060 4.060 12 C -0.127 4.127 13 C -0.113 4.113 14 C -0.185 4.185 15 Br 0.028 6.972 16 C -0.121 4.121 17 C -0.125 4.125 18 C -0.153 4.153 19 C 0.030 3.970 20 H 0.114 0.886 21 O -0.369 6.369 22 C -0.208 4.208 23 C -0.328 4.328 24 S 0.514 5.486 25 H 0.237 0.763 26 H 0.146 0.854 27 H -0.202 1.202 28 H -0.174 1.174 29 H 0.148 0.852 30 H 0.252 0.748 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.111 0.889 36 H 0.147 0.853 37 H 0.246 0.754 38 H 0.130 0.870 39 H 0.077 0.923 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 7.881 3.958 3.743 9.581 hybrid contribution -1.299 -1.580 -0.365 2.077 sum 6.582 2.378 3.377 7.771 Atomic orbital electron populations 1.86614 1.18232 1.80424 1.50063 1.24729 0.83269 1.11469 0.96302 0.94400 0.90491 0.72110 0.80064 1.24805 1.09574 0.98150 1.03631 1.20959 0.98811 0.94950 0.95638 1.20123 1.07750 0.94078 0.97801 1.17781 0.77528 0.87220 0.80808 1.90821 1.44165 1.50889 1.58764 1.45254 1.59256 1.08464 1.20552 1.20066 0.90260 0.82116 0.97503 1.20130 0.95148 0.93913 0.96807 1.21220 0.97538 0.94510 0.99436 1.21331 0.91503 1.00391 0.98103 1.21936 0.92027 0.95801 1.08782 1.96736 1.19752 1.86322 1.94390 1.21202 0.98280 0.93664 0.98993 1.20970 0.92020 1.00156 0.99346 1.23480 0.91670 1.05020 0.95170 1.22719 0.91827 0.88674 0.93781 0.88616 1.86368 1.57192 1.33246 1.60091 1.24195 0.97049 1.00542 0.99058 1.26130 1.03023 0.97944 1.05701 1.82991 1.48693 1.07846 1.09120 0.76267 0.85410 1.20216 1.17416 0.85179 0.74842 0.82345 0.83447 0.85022 0.86024 0.88915 0.85310 0.75407 0.87038 0.92311 0.78413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.90 12.88 -148.98 -1.92 -3.82 16 2 C -0.05 0.01 2.94 71.23 0.21 0.22 16 3 Si 0.73 -2.33 30.92 68.60 2.12 -0.21 16 4 C -0.24 -0.06 5.65 24.51 0.14 0.07 16 5 C -0.07 -0.37 9.95 22.67 0.23 -0.15 16 6 C -0.18 -0.52 5.98 -19.87 -0.12 -0.64 16 7 C 0.58 3.45 6.25 86.59 0.54 3.99 16 8 O -0.57 -8.22 15.22 -4.15 -0.06 -8.28 16 9 N -0.68 0.33 3.79 -427.37 -1.62 -1.29 16 10 C 0.19 -0.18 0.93 3.38 0.00 -0.18 16 11 C -0.06 -0.16 4.58 -19.86 -0.09 -0.25 16 12 C -0.11 -0.09 8.83 22.27 0.20 0.11 16 13 C -0.09 -0.29 9.79 22.28 0.22 -0.07 16 14 C -0.11 -0.66 6.22 22.31 0.14 -0.52 16 15 Br -0.06 -0.34 33.70 -20.37 -0.69 -1.03 16 16 C -0.10 -0.66 9.79 22.28 0.22 -0.45 16 17 C -0.11 -0.59 8.59 22.27 0.19 -0.40 16 18 C -0.12 0.74 7.13 31.12 0.22 0.97 16 19 C 0.09 -0.56 5.28 31.18 0.16 -0.40 16 20 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 21 O -0.56 2.82 13.09 -148.98 -1.95 0.87 16 22 C -0.17 0.28 6.67 31.18 0.21 0.48 16 23 C -0.19 0.72 10.38 67.30 0.70 1.42 16 24 S 0.25 -1.18 20.20 -56.49 -1.14 -2.32 16 25 H 0.39 -1.05 8.70 -74.06 -0.64 -1.70 16 26 H 0.13 -0.14 7.96 -2.38 -0.02 -0.16 16 27 H -0.28 -1.06 7.11 99.48 0.71 -0.36 16 28 H -0.25 0.33 7.11 99.48 0.71 1.04 16 29 H 0.13 1.21 8.06 -2.91 -0.02 1.18 16 30 H 0.41 -2.15 7.17 -92.70 -0.66 -2.82 16 31 H 0.16 -0.83 6.41 -2.91 -0.02 -0.84 16 32 H 0.15 -0.05 8.06 -2.91 -0.02 -0.08 16 33 H 0.13 0.66 8.06 -2.91 -0.02 0.64 16 34 H 0.12 0.59 6.75 -2.91 -0.02 0.57 16 35 H 0.09 -0.65 8.09 -2.39 -0.02 -0.67 16 36 H 0.13 -1.20 7.86 -2.39 -0.02 -1.22 16 37 H 0.40 -4.20 9.12 -74.05 -0.68 -4.87 16 38 H 0.11 -0.46 6.11 -2.39 -0.01 -0.47 16 39 H 0.06 0.25 7.53 -2.38 -0.02 0.23 16 40 H 0.20 -1.99 7.02 -2.91 -0.02 -2.01 16 Total: 0.00 -21.45 368.00 -2.90 -24.36 By element: Atomic # 1 Polarization: -11.68 SS G_CDS: -0.81 Total: -12.49 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 3.16 Total: 4.22 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -1.62 Total: -1.29 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -3.93 Total: -11.23 kcal Atomic # 14 Polarization: -2.33 SS G_CDS: 2.12 Total: -0.21 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -1.14 Total: -2.32 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -0.69 Total: -1.03 kcal Total: -21.45 -2.90 -24.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891094_6894386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.652 kcal (2) G-P(sol) polarization free energy of solvation -21.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds