Wall clock time and date at job start Sat Mar 6 2021 23:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47026 * 2 1 4 4 C 1.35903 * 116.99824 * 277.28379 * 3 2 1 5 5 C 1.38735 * 120.05780 * 356.40978 * 4 3 2 6 6 C 1.38140 * 119.94350 * 180.27273 * 5 4 3 7 7 C 1.38271 * 120.05642 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.94313 * 180.02562 * 7 6 5 9 9 O 1.42900 * 109.47090 * 244.98147 * 8 7 6 10 10 Si 1.86298 * 109.47299 * 4.98239 * 8 7 6 11 11 C 1.38266 * 120.11077 * 0.02562 * 7 6 5 12 12 C 1.38139 * 120.05632 * 359.97438 * 11 7 6 13 13 C 1.50697 * 109.47286 * 120.00145 * 2 1 3 14 14 O 1.21283 * 119.99877 * 244.99891 * 13 2 1 15 15 N 1.34777 * 120.00103 * 64.99959 * 13 2 1 16 16 C 1.46496 * 120.00173 * 184.87785 * 15 13 2 17 17 C 1.50705 * 112.84621 * 283.48172 * 16 15 13 18 18 C 1.38241 * 120.00115 * 2.88592 * 17 16 15 19 19 C 1.38233 * 119.99598 * 179.74291 * 18 17 16 20 20 C 1.38224 * 120.00232 * 0.54956 * 19 18 17 21 21 C 1.38237 * 120.00213 * 359.70223 * 20 19 18 22 22 C 1.38230 * 120.00031 * 183.15469 * 17 16 15 23 23 C 1.53777 * 113.61586 * 152.18055 * 16 15 13 24 24 C 1.53777 * 87.07902 * 270.88035 * 23 16 15 25 25 H 1.09007 * 113.69248 * 220.00588 * 24 23 16 26 26 O 1.42903 * 113.61880 * 89.11723 * 24 23 16 27 27 C 1.53776 * 87.08283 * 334.56690 * 24 23 16 28 28 H 1.09005 * 109.46788 * 299.99778 * 1 2 3 29 29 H 1.09000 * 109.47203 * 59.99270 * 1 2 3 30 30 H 1.08999 * 109.47235 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46788 * 240.00222 * 2 1 3 32 32 H 1.07996 * 120.02486 * 0.25599 * 5 4 3 33 33 H 1.07994 * 119.97262 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.46699 * 124.98229 * 8 7 6 35 35 H 0.96693 * 114.00272 * 60.00155 * 9 8 7 36 36 H 1.48504 * 109.99878 * 58.67629 * 10 8 7 37 37 H 1.48494 * 109.99921 * 179.97438 * 10 8 7 38 38 H 1.07998 * 119.97070 * 180.02562 * 11 7 6 39 39 H 1.08002 * 120.03003 * 180.02562 * 12 11 7 40 40 H 0.97007 * 119.99749 * 4.87395 * 15 13 2 41 41 H 1.07996 * 119.99491 * 359.97438 * 18 17 16 42 42 H 1.08007 * 119.99587 * 180.26936 * 19 18 17 43 43 H 1.08002 * 120.00517 * 179.72499 * 20 19 18 44 44 H 1.08000 * 120.00318 * 179.97438 * 21 20 19 45 45 H 1.08006 * 119.99807 * 0.02562 * 22 17 16 46 46 H 1.08996 * 113.61700 * 25.42933 * 23 16 15 47 47 H 1.09000 * 113.61799 * 156.33377 * 23 16 15 48 48 H 0.96695 * 113.99912 * 82.49724 * 26 24 23 49 49 H 1.08999 * 113.61559 * 270.88627 * 27 24 23 50 50 H 1.09004 * 113.61764 * 139.98094 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0672 1.9801 -1.2012 5 6 1.7478 1.2951 -2.3645 6 6 1.8159 1.9391 -3.5847 7 6 2.2026 3.2651 -3.6473 8 6 2.2755 3.9653 -4.9798 9 8 3.6317 4.3194 -5.2582 10 14 1.6440 2.8288 -6.3140 11 6 2.5226 3.9497 -2.4894 12 6 2.4560 3.3103 -1.2668 13 6 2.0324 -0.7104 1.2304 14 8 2.6531 -0.0979 2.0733 15 7 1.7920 -2.0264 1.3941 16 6 2.1859 -2.6940 2.6372 17 6 3.6661 -2.9677 2.7107 18 6 4.4995 -2.5399 1.6941 19 6 5.8578 -2.7863 1.7642 20 6 6.3813 -3.4705 2.8452 21 6 5.5472 -3.9028 3.8593 22 6 4.1896 -3.6514 3.7920 23 6 1.3143 -3.9121 2.9853 24 6 0.3922 -2.9384 3.7379 25 1 0.0135 -3.3338 4.6804 26 8 -0.6351 -2.3748 2.9199 27 6 1.6194 -2.0262 3.9013 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.4463 0.2592 -2.3161 33 1 1.5669 1.4064 -4.4905 34 1 1.6633 4.8667 -4.9505 35 1 4.2348 3.5647 -5.2992 36 1 0.2448 2.4277 -6.0192 37 1 1.7101 3.5078 -7.6329 38 1 2.8240 4.9855 -2.5409 39 1 2.7056 3.8456 -0.3625 40 1 1.3580 -2.5316 0.6887 41 1 4.0897 -2.0099 0.8471 42 1 6.5096 -2.4483 0.9720 43 1 7.4420 -3.6669 2.8979 44 1 5.9562 -4.4377 4.7037 45 1 3.5379 -3.9898 4.5839 46 1 0.8449 -4.3754 2.1175 47 1 1.8109 -4.6332 3.6345 48 1 -1.4095 -2.9439 2.8133 49 1 2.1995 -2.2317 4.8010 50 1 1.3964 -0.9670 3.7730 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_10157680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:47:50 Heat of formation + Delta-G solvation = -50.949170 kcal Electronic energy + Delta-G solvation = -34048.582997 eV Core-core repulsion = 29588.374679 eV Total energy + Delta-G solvation = -4460.208317 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.31090 -41.46100 -40.01711 -39.29388 -38.82543 -37.15833 -36.19577 -34.53535 -32.96286 -31.96709 -31.72071 -31.65305 -31.35321 -26.96000 -26.80667 -26.20278 -25.09887 -24.11402 -23.50773 -22.65629 -22.25461 -21.42367 -20.31836 -19.52813 -18.76031 -18.60748 -18.05977 -17.77547 -17.00114 -16.86049 -16.76754 -16.47722 -16.38597 -16.08562 -15.68862 -15.64153 -15.53586 -15.26983 -15.11019 -14.68707 -14.55293 -14.43887 -14.27843 -14.08775 -14.01802 -13.75655 -13.59850 -13.47264 -13.32162 -13.22858 -12.98539 -12.86673 -12.32403 -12.28932 -12.22015 -12.07946 -12.01998 -11.95875 -11.69297 -11.43668 -10.94214 -10.76187 -10.40520 -10.10785 -10.07529 -9.84685 -9.60116 -9.24430 -4.99336 0.24997 0.27092 0.38429 0.46874 1.33566 1.42115 1.50030 1.65053 1.98593 2.46020 2.62892 2.77378 3.14173 3.37783 3.51902 3.55776 3.59585 3.63123 3.66974 3.70858 3.81979 3.85113 3.88741 3.93585 4.04583 4.09917 4.23911 4.26618 4.34022 4.38194 4.47922 4.57689 4.59476 4.62389 4.63096 4.66641 4.69990 4.84569 4.87521 4.93916 4.98510 4.99909 5.04498 5.08830 5.12673 5.15968 5.22805 5.38411 5.46832 5.53888 5.59847 5.66886 5.72884 6.07178 6.25002 6.46563 6.78751 6.94634 7.15163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.064 3.936 3 O -0.314 6.314 4 C 0.122 3.878 5 C -0.204 4.204 6 C -0.071 4.071 7 C -0.161 4.161 8 C -0.074 4.074 9 O -0.558 6.558 10 Si 0.781 3.219 11 C -0.059 4.059 12 C -0.168 4.168 13 C 0.522 3.478 14 O -0.556 6.556 15 N -0.680 5.680 16 C 0.193 3.807 17 C -0.088 4.088 18 C -0.118 4.118 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.145 4.145 24 C 0.089 3.911 25 H 0.091 0.909 26 O -0.562 6.562 27 C -0.140 4.140 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.103 0.897 35 H 0.395 0.605 36 H -0.281 1.281 37 H -0.302 1.302 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.418 0.582 41 H 0.107 0.893 42 H 0.127 0.873 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.101 0.899 47 H 0.120 0.880 48 H 0.398 0.602 49 H 0.108 0.892 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 -10.603 -1.780 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.004 3.996 3 O -0.227 6.227 4 C 0.077 3.923 5 C -0.222 4.222 6 C -0.088 4.088 7 C -0.162 4.162 8 C -0.183 4.183 9 O -0.367 6.367 10 Si 0.686 3.314 11 C -0.077 4.077 12 C -0.187 4.187 13 C 0.308 3.692 14 O -0.433 6.433 15 N -0.333 5.333 16 C 0.106 3.894 17 C -0.089 4.089 18 C -0.137 4.137 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.183 4.183 24 C 0.029 3.971 25 H 0.109 0.891 26 O -0.370 6.370 27 C -0.178 4.178 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.145 0.855 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.120 0.880 35 H 0.244 0.756 36 H -0.207 1.207 37 H -0.231 1.231 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.257 0.743 41 H 0.125 0.875 42 H 0.145 0.855 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.163 0.837 46 H 0.119 0.881 47 H 0.138 0.862 48 H 0.249 0.751 49 H 0.127 0.873 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.141 -9.129 -1.636 9.792 hybrid contribution -0.394 0.494 0.235 0.675 sum -3.536 -8.635 -1.401 9.435 Atomic orbital electron populations 1.22249 0.90660 1.05538 1.03619 1.22417 0.96996 0.82151 0.98007 1.86209 1.80935 1.26994 1.28563 1.19245 0.96087 0.92423 0.84525 1.21459 1.07421 1.02003 0.91314 1.21044 0.96580 0.93273 0.97907 1.20360 1.04658 0.95255 0.95929 1.25203 0.88171 1.05473 0.99464 1.86466 1.17908 1.38683 1.93596 0.93790 0.80758 0.83333 0.73479 1.20914 0.96048 1.00134 0.90632 1.20603 1.06027 0.92859 0.99194 1.20338 0.78835 0.82587 0.87486 1.90761 1.40390 1.66895 1.45231 1.45146 1.61544 1.07792 1.18801 1.19992 0.89368 0.95114 0.84938 1.20059 0.95190 0.98398 0.95267 1.20997 0.93949 0.99634 0.99081 1.21372 0.95364 0.99317 0.99260 1.21451 1.00898 0.98428 0.94339 1.21455 0.93660 0.99913 0.99236 1.21168 0.95894 0.98891 0.97779 1.24029 0.96556 0.95108 1.02626 1.22653 0.87514 0.92981 0.93923 0.89119 1.86471 1.30636 1.48184 1.71711 1.23517 0.96598 1.00030 0.97694 0.92996 0.89889 0.87325 0.85547 0.82182 0.82645 0.87967 0.75557 1.20740 1.23081 0.84916 0.85797 0.74346 0.87480 0.85537 0.84654 0.83901 0.83734 0.88072 0.86180 0.75147 0.87333 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.46 9.20 71.98 0.66 1.12 16 2 C 0.06 0.06 2.66 29.85 0.08 0.14 16 3 O -0.31 -2.77 9.35 -73.47 -0.69 -3.45 16 4 C 0.12 0.68 6.53 22.51 0.15 0.83 16 5 C -0.20 0.16 8.33 22.37 0.19 0.35 16 6 C -0.07 0.14 8.66 22.25 0.19 0.33 16 7 C -0.16 -0.19 5.35 -19.85 -0.11 -0.30 16 8 C -0.07 -0.01 2.80 71.24 0.20 0.19 16 9 O -0.56 -0.76 12.83 -148.98 -1.91 -2.67 16 10 Si 0.78 -2.18 29.80 68.60 2.04 -0.14 16 11 C -0.06 -0.25 9.68 22.25 0.22 -0.04 16 12 C -0.17 -1.14 9.99 22.37 0.22 -0.91 16 13 C 0.52 2.94 5.25 87.66 0.46 3.40 16 14 O -0.56 -9.09 14.46 15.95 0.23 -8.86 16 15 N -0.68 0.91 3.80 -423.94 -1.61 -0.70 16 16 C 0.19 -0.04 0.98 3.38 0.00 -0.04 16 17 C -0.09 -0.31 5.14 -19.86 -0.10 -0.41 16 18 C -0.12 -0.74 8.81 22.27 0.20 -0.54 16 19 C -0.14 -0.72 10.05 22.27 0.22 -0.49 16 20 C -0.13 -0.43 10.05 22.27 0.22 -0.20 16 21 C -0.12 -0.18 10.05 22.27 0.22 0.04 16 22 C -0.12 -0.12 8.41 22.27 0.19 0.06 16 23 C -0.15 1.06 7.07 31.12 0.22 1.28 16 24 C 0.09 -0.43 5.28 31.12 0.16 -0.26 16 25 H 0.09 -0.72 8.14 -2.38 -0.02 -0.74 16 26 O -0.56 2.46 13.09 -148.98 -1.95 0.51 16 27 C -0.14 -0.34 6.56 31.12 0.20 -0.14 16 28 H 0.05 0.15 8.14 -2.38 -0.02 0.13 16 29 H 0.08 -0.35 7.29 -2.39 -0.02 -0.37 16 30 H 0.11 -0.93 8.09 -2.39 -0.02 -0.95 16 31 H 0.13 -0.74 6.01 -2.38 -0.01 -0.75 16 32 H 0.16 -1.16 5.68 -2.91 -0.02 -1.17 16 33 H 0.16 -1.22 4.90 -2.91 -0.01 -1.24 16 34 H 0.10 0.18 7.96 -2.39 -0.02 0.16 16 35 H 0.39 -2.66 8.70 -74.06 -0.64 -3.31 16 36 H -0.28 -0.31 7.11 99.48 0.71 0.40 16 37 H -0.30 -1.58 7.11 99.48 0.71 -0.87 16 38 H 0.13 0.44 8.06 -2.91 -0.02 0.41 16 39 H 0.12 0.94 8.06 -2.91 -0.02 0.91 16 40 H 0.42 -3.41 8.71 -92.70 -0.81 -4.21 16 41 H 0.11 0.66 6.16 -2.91 -0.02 0.65 16 42 H 0.13 0.34 8.06 -2.91 -0.02 0.32 16 43 H 0.14 -0.07 8.06 -2.91 -0.02 -0.10 16 44 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 45 H 0.14 -0.64 6.74 -2.91 -0.02 -0.66 16 46 H 0.10 -1.06 8.13 -2.39 -0.02 -1.08 16 47 H 0.12 -1.14 6.77 -2.39 -0.02 -1.16 16 48 H 0.40 -5.20 9.12 -74.06 -0.68 -5.88 16 49 H 0.11 0.08 7.17 -2.39 -0.02 0.06 16 50 H 0.05 0.58 6.62 -2.38 -0.02 0.57 16 Total: 0.00 -29.09 403.00 -1.16 -30.25 By element: Atomic # 1 Polarization: -18.28 SS G_CDS: -1.08 Total: -19.35 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 3.80 Total: 4.42 kcal Atomic # 7 Polarization: 0.91 SS G_CDS: -1.61 Total: -0.70 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -4.32 Total: -14.47 kcal Atomic # 14 Polarization: -2.18 SS G_CDS: 2.04 Total: -0.14 kcal Total: -29.09 -1.16 -30.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_10157680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.698 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds