Wall clock time and date at job start Sat Mar 6 2021 23:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35539 * 125.67594 * 2 1 4 4 C 1.35449 * 108.86979 * 179.82560 * 3 2 1 5 5 C 1.50702 * 126.06606 * 180.18332 * 4 3 2 6 6 O 1.42900 * 109.47438 * 120.28476 * 5 4 3 7 7 Si 1.86306 * 109.47021 * 0.28663 * 5 4 3 8 8 C 1.39830 * 107.86570 * 0.42826 * 4 3 2 9 9 C 1.37648 * 125.68195 * 180.30003 * 2 1 3 10 10 C 1.46679 * 126.23160 * 0.02562 * 9 2 1 11 11 O 1.21693 * 119.99990 * 172.79636 * 10 9 2 12 12 N 1.34776 * 120.00046 * 352.80189 * 10 9 2 13 13 C 1.46503 * 119.99812 * 185.61785 * 12 10 9 14 14 C 1.50701 * 112.84610 * 67.77403 * 13 12 10 15 15 C 1.38241 * 119.99927 * 199.24692 * 14 13 12 16 16 C 1.38235 * 120.00054 * 179.76813 * 15 14 13 17 17 C 1.38238 * 119.99920 * 0.48507 * 16 15 14 18 18 C 1.38238 * 119.99661 * 359.79010 * 17 16 15 19 19 C 1.38229 * 120.00631 * 359.95663 * 18 17 16 20 20 C 1.53775 * 113.61814 * 296.57807 * 13 12 10 21 21 C 1.53777 * 87.07867 * 270.88662 * 20 13 12 22 22 H 1.09010 * 113.61085 * 219.93511 * 21 20 13 23 23 O 1.42895 * 113.61971 * 89.11711 * 21 20 13 24 24 C 1.53779 * 87.08307 * 334.56509 * 21 20 13 25 25 H 1.09003 * 109.47564 * 257.10243 * 1 2 3 26 26 H 1.09009 * 109.46914 * 137.10901 * 1 2 3 27 27 H 1.08992 * 109.47435 * 17.10770 * 1 2 3 28 28 H 1.07998 * 125.55813 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47472 * 240.29011 * 5 4 3 30 30 H 0.96701 * 113.99606 * 300.00983 * 6 5 4 31 31 H 1.48503 * 109.99953 * 58.68109 * 7 5 4 32 32 H 1.48497 * 110.00057 * 179.97438 * 7 5 4 33 33 H 1.08006 * 126.45601 * 179.76951 * 8 4 3 34 34 H 0.96996 * 120.00329 * 5.62061 * 12 10 9 35 35 H 1.07999 * 119.99290 * 0.02562 * 15 14 13 36 36 H 1.07994 * 119.99694 * 180.25146 * 16 15 14 37 37 H 1.07996 * 120.00126 * 179.76620 * 17 16 15 38 38 H 1.08003 * 119.99676 * 179.97438 * 18 17 16 39 39 H 1.07999 * 120.00502 * 179.97438 * 19 18 17 40 40 H 1.09006 * 113.61288 * 25.43344 * 20 13 12 41 41 H 1.08999 * 113.61703 * 156.33354 * 20 13 12 42 42 H 0.96703 * 114.00278 * 179.97438 * 23 21 20 43 43 H 1.08998 * 113.61443 * 270.88582 * 24 21 20 44 44 H 1.08996 * 113.61666 * 139.98330 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5520 0.7094 0.0039 5 6 4.7536 1.6190 0.0092 6 8 5.5395 1.3634 1.1749 7 14 4.1884 3.3943 0.0183 8 6 3.5779 -0.6886 -0.0035 9 6 2.2678 -1.1181 -0.0059 10 6 1.8125 -2.5124 -0.0137 11 8 2.6175 -3.4146 -0.1505 12 7 0.5024 -2.7942 0.1305 13 6 0.0612 -4.1864 0.2463 14 6 0.5096 -4.8376 1.5293 15 6 0.5360 -6.2159 1.6324 16 6 0.9519 -6.8132 2.8076 17 6 1.3319 -6.0323 3.8831 18 6 1.3001 -4.6540 3.7818 19 6 0.8892 -4.0566 2.6050 20 6 0.3496 -5.0304 -1.0064 21 6 -1.0254 -4.5820 -1.5288 22 1 -1.5791 -5.3728 -2.0352 23 8 -0.9846 -3.3660 -2.2781 24 6 -1.4327 -4.3865 -0.0589 25 1 -0.3634 -0.2294 1.0017 26 1 -0.3633 -0.7530 -0.6995 27 1 -0.3634 0.9821 -0.3023 28 1 1.9080 2.1236 -0.0004 29 1 5.3537 1.4335 -0.8816 30 1 5.0681 1.5084 2.0066 31 1 3.3427 3.6519 1.2115 32 1 5.3640 4.3015 0.0242 33 1 4.4584 -1.3142 -0.0063 34 1 -0.1483 -2.0754 0.1576 35 1 0.2356 -6.8259 0.7934 36 1 0.9764 -7.8900 2.8867 37 1 1.6533 -6.4989 4.8025 38 1 1.5966 -4.0438 4.6222 39 1 0.8639 -2.9798 2.5260 40 1 1.1847 -4.6589 -1.6003 41 1 0.4135 -6.1001 -0.8071 42 1 -1.8465 -3.0791 -2.6097 43 1 -1.8561 -5.2802 0.3995 44 1 -2.0365 -3.4954 0.1121 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_10803934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:47:57 Heat of formation + Delta-G solvation = 13.409106 kcal Electronic energy + Delta-G solvation = -29005.040358 eV Core-core repulsion = 25084.642866 eV Total energy + Delta-G solvation = -3920.397493 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.76098 -41.83803 -39.63202 -39.17463 -37.90595 -36.30997 -34.78885 -33.47429 -31.86536 -31.70698 -30.83551 -28.40729 -27.06239 -26.31184 -25.49374 -23.94060 -23.42607 -22.35976 -21.33850 -20.86277 -20.25577 -18.88683 -18.65127 -17.95047 -17.55895 -17.04519 -16.93025 -16.73715 -16.44430 -15.96752 -15.70075 -15.65852 -15.48930 -15.17415 -15.11461 -14.93869 -14.50246 -14.26474 -14.04148 -13.95623 -13.66730 -13.50087 -13.29988 -13.19869 -13.15265 -12.92423 -12.43123 -12.34617 -12.27189 -11.95963 -11.81907 -11.57504 -11.12057 -11.00036 -10.51429 -10.19526 -9.89661 -9.72645 -9.63742 -9.29275 -4.86629 0.33870 0.36944 0.42328 1.35810 1.54974 1.65323 1.71812 1.96316 2.06314 2.25981 2.73520 3.10488 3.41659 3.51446 3.53222 3.60502 3.66746 3.74435 3.80641 3.97827 4.04312 4.06609 4.17026 4.18613 4.24555 4.32311 4.38001 4.54229 4.57348 4.58548 4.66645 4.71300 4.78029 4.82792 4.86965 4.94571 4.97647 5.01040 5.09108 5.09694 5.34040 5.49380 5.55477 5.59591 5.66843 5.78766 6.03103 6.15147 6.41807 6.58861 6.90783 7.10303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.417 5.417 3 C 0.051 3.949 4 C -0.221 4.221 5 C -0.062 4.062 6 O -0.557 6.557 7 Si 0.792 3.208 8 C -0.111 4.111 9 C -0.075 4.075 10 C 0.592 3.408 11 O -0.566 6.566 12 N -0.690 5.690 13 C 0.186 3.814 14 C -0.083 4.083 15 C -0.122 4.122 16 C -0.124 4.124 17 C -0.133 4.133 18 C -0.132 4.132 19 C -0.124 4.124 20 C -0.144 4.144 21 C 0.089 3.911 22 H 0.096 0.904 23 O -0.565 6.565 24 C -0.145 4.145 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.137 0.863 28 H 0.214 0.786 29 H 0.107 0.893 30 H 0.383 0.617 31 H -0.268 1.268 32 H -0.310 1.310 33 H 0.119 0.881 34 H 0.410 0.590 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.052 0.948 41 H 0.115 0.885 42 H 0.399 0.601 43 H 0.120 0.880 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.071 3.176 -1.053 12.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.091 5.091 3 C -0.086 4.086 4 C -0.228 4.228 5 C -0.170 4.170 6 O -0.365 6.365 7 Si 0.696 3.304 8 C -0.138 4.138 9 C -0.187 4.187 10 C 0.380 3.620 11 O -0.445 6.445 12 N -0.346 5.346 13 C 0.099 3.901 14 C -0.084 4.084 15 C -0.140 4.140 16 C -0.142 4.142 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.142 4.142 20 C -0.182 4.182 21 C 0.030 3.970 22 H 0.114 0.886 23 O -0.373 6.373 24 C -0.182 4.182 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.155 0.845 28 H 0.231 0.769 29 H 0.125 0.875 30 H 0.232 0.768 31 H -0.194 1.194 32 H -0.239 1.239 33 H 0.137 0.863 34 H 0.253 0.747 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.128 0.872 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.249 0.751 43 H 0.138 0.862 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.891 3.040 -1.025 11.353 hybrid contribution 0.271 -0.423 1.128 1.235 sum -10.619 2.618 0.104 10.938 Atomic orbital electron populations 1.22797 0.74292 1.08118 1.04894 1.44144 1.07667 1.04424 1.52877 1.22350 0.89113 0.92873 1.04285 1.19857 0.95094 0.93573 1.14246 1.24819 0.92444 1.09756 0.89993 1.86561 1.42393 1.90688 1.16867 0.94266 0.79908 0.69907 0.86342 1.21147 0.94505 0.95325 1.02776 1.20292 0.91330 0.86643 1.20455 1.17185 0.82626 0.86567 0.75588 1.90829 1.55117 1.47447 1.51057 1.45763 1.06805 1.08052 1.73992 1.20068 0.97007 0.81691 0.91378 1.19987 0.99534 0.94175 0.94688 1.21224 1.00344 0.93719 0.98695 1.21463 0.98544 1.01075 0.93094 1.21457 0.99983 0.93850 0.99824 1.21368 0.99872 0.95737 0.98048 1.20986 1.00038 0.99547 0.93618 1.23613 0.97951 1.00878 0.95755 1.22666 0.95929 0.87650 0.90742 0.88616 1.86487 1.37311 1.41059 1.72481 1.23997 0.91951 1.05256 0.97039 0.88531 0.88802 0.84489 0.76943 0.87549 0.76785 1.19428 1.23863 0.86305 0.74735 0.84027 0.83923 0.84522 0.85342 0.87199 0.92949 0.86659 0.75056 0.86175 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.42 9.41 127.77 1.20 0.78 16 2 N -0.42 0.60 3.16 -534.32 -1.69 -1.09 16 3 C 0.05 -0.13 9.91 83.48 0.83 0.70 16 4 C -0.22 -0.85 5.44 -20.12 -0.11 -0.96 16 5 C -0.06 -0.19 3.02 71.24 0.22 0.03 16 6 O -0.56 -4.13 12.88 -148.98 -1.92 -6.05 16 7 Si 0.79 -2.20 30.59 68.60 2.10 -0.10 16 8 C -0.11 -1.19 10.60 22.57 0.24 -0.95 16 9 C -0.08 -0.58 6.88 40.35 0.28 -0.31 16 10 C 0.59 6.29 6.62 86.45 0.57 6.86 16 11 O -0.57 -11.21 15.34 -4.33 -0.07 -11.28 16 12 N -0.69 -1.63 3.62 -427.84 -1.55 -3.18 16 13 C 0.19 0.36 0.92 3.38 0.00 0.36 16 14 C -0.08 -0.45 4.79 -19.86 -0.10 -0.54 16 15 C -0.12 -0.44 9.03 22.27 0.20 -0.24 16 16 C -0.12 -0.43 10.05 22.27 0.22 -0.20 16 17 C -0.13 -0.61 10.05 22.27 0.22 -0.38 16 18 C -0.13 -0.82 10.05 22.27 0.22 -0.60 16 19 C -0.12 -0.88 9.01 22.27 0.20 -0.68 16 20 C -0.14 -0.49 6.55 31.12 0.20 -0.28 16 21 C 0.09 -0.36 5.28 31.12 0.16 -0.19 16 22 H 0.10 -0.75 8.14 -2.38 -0.02 -0.77 16 23 O -0.56 1.93 13.09 -148.98 -1.95 -0.02 16 24 C -0.14 0.86 7.15 31.12 0.22 1.08 16 25 H 0.10 -1.28 7.94 -2.39 -0.02 -1.30 16 26 H 0.09 -1.02 6.41 -2.38 -0.02 -1.03 16 27 H 0.14 -2.38 8.09 -2.39 -0.02 -2.40 16 28 H 0.21 -2.40 6.19 -2.91 -0.02 -2.42 16 29 H 0.11 0.38 7.96 -2.39 -0.02 0.36 16 30 H 0.38 0.43 8.70 -74.06 -0.64 -0.21 16 31 H -0.27 0.35 7.11 99.48 0.71 1.05 16 32 H -0.31 -1.86 7.11 99.48 0.71 -1.16 16 33 H 0.12 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.41 -1.61 4.35 -92.71 -0.40 -2.01 16 35 H 0.14 -0.15 6.20 -2.91 -0.02 -0.17 16 36 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 37 H 0.14 0.08 8.06 -2.91 -0.02 0.05 16 38 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 39 H 0.11 0.71 7.08 -2.91 -0.02 0.69 16 40 H 0.05 0.63 7.02 -2.38 -0.02 0.61 16 41 H 0.12 0.06 5.96 -2.39 -0.01 0.04 16 42 H 0.40 -5.15 9.12 -74.06 -0.68 -5.83 16 43 H 0.12 -0.95 7.99 -2.39 -0.02 -0.97 16 44 H 0.10 -0.95 8.10 -2.39 -0.02 -0.97 16 Total: 0.00 -30.80 359.09 -0.90 -31.69 By element: Atomic # 1 Polarization: -13.81 SS G_CDS: -0.62 Total: -14.43 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 4.80 Total: 4.46 kcal Atomic # 7 Polarization: -1.03 SS G_CDS: -3.24 Total: -4.27 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -3.93 Total: -17.35 kcal Atomic # 14 Polarization: -2.20 SS G_CDS: 2.10 Total: -0.10 kcal Total: -30.80 -0.90 -31.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_10803934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.102 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds