Wall clock time and date at job start Sat Mar 6 2021 23:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35663 * 116.99521 * 2 1 4 4 C 1.38393 * 120.12406 * 0.02562 * 3 2 1 5 5 C 1.38725 * 120.03471 * 179.97438 * 4 3 2 6 6 O 1.35711 * 119.86501 * 179.97438 * 5 4 3 7 7 C 1.42897 * 117.00220 * 359.97438 * 6 5 4 8 8 C 1.39147 * 120.27355 * 359.97367 * 5 4 3 9 9 C 1.50700 * 119.88069 * 179.74324 * 8 5 4 10 10 O 1.42901 * 109.46703 * 75.00317 * 9 8 5 11 11 Si 1.86295 * 109.47090 * 194.99826 * 9 8 5 12 12 C 1.37584 * 120.23646 * 0.02562 * 8 5 4 13 13 C 1.39815 * 119.96422 * 0.02562 * 12 8 5 14 14 C 1.47308 * 120.13185 * 179.97438 * 13 12 8 15 15 O 1.21624 * 119.99781 * 179.97438 * 14 13 12 16 16 N 1.34770 * 120.00111 * 359.97438 * 14 13 12 17 17 C 1.46506 * 119.99985 * 175.03933 * 16 14 13 18 18 C 1.50699 * 112.85060 * 291.22740 * 17 16 14 19 19 C 1.38241 * 119.99750 * 346.58425 * 18 17 16 20 20 C 1.38230 * 119.99932 * 179.76755 * 19 18 17 21 21 C 1.38234 * 120.00180 * 0.50433 * 20 19 18 22 22 C 1.38235 * 119.99612 * 359.74822 * 21 20 19 23 23 C 1.38230 * 120.00414 * 359.97438 * 22 21 20 24 24 C 1.53778 * 113.61236 * 159.92189 * 17 16 14 25 25 C 1.53784 * 87.08201 * 270.88054 * 24 17 16 26 26 H 1.08999 * 113.61367 * 220.02196 * 25 24 17 27 27 O 1.42905 * 113.68680 * 89.12872 * 25 24 17 28 28 C 1.53773 * 113.61542 * 62.42535 * 17 16 14 29 29 H 1.08999 * 109.47114 * 59.99614 * 1 2 3 30 30 H 1.09000 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47107 * 299.99619 * 1 2 3 32 32 H 1.08006 * 119.98721 * 359.97438 * 4 3 2 33 33 H 1.09006 * 109.47251 * 299.99938 * 7 6 5 34 34 H 1.09002 * 109.47006 * 59.99961 * 7 6 5 35 35 H 1.08999 * 109.47617 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.47255 * 315.00605 * 9 8 5 37 37 H 0.96702 * 114.00385 * 59.99807 * 10 9 8 38 38 H 1.48498 * 109.99975 * 179.97438 * 11 9 8 39 39 H 1.48498 * 110.00301 * 301.32261 * 11 9 8 40 40 H 1.08006 * 120.01540 * 179.97438 * 12 8 5 41 41 H 0.96999 * 120.00443 * 355.03215 * 16 14 13 42 42 H 1.08005 * 119.99893 * 359.97438 * 19 18 17 43 43 H 1.08001 * 120.00442 * 180.23364 * 20 19 18 44 44 H 1.07992 * 120.00612 * 179.72683 * 21 20 19 45 45 H 1.08002 * 120.00209 * 179.97438 * 22 21 20 46 46 H 1.07999 * 120.00663 * 179.97438 * 23 22 21 47 47 H 1.09003 * 113.61800 * 25.43184 * 24 17 16 48 48 H 1.09007 * 113.61058 * 156.33443 * 24 17 16 49 49 H 0.96696 * 113.99690 * 82.46765 * 27 25 24 50 50 H 1.08997 * 113.61809 * 203.66496 * 28 17 16 51 51 H 1.09003 * 113.61595 * 334.47995 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2935 2.3710 0.0005 5 6 1.9251 3.6062 0.0011 6 8 1.1850 4.7437 0.0011 7 6 -0.2360 4.5931 -0.0001 8 6 3.3144 3.6836 0.0016 9 6 3.9914 5.0300 -0.0036 10 8 3.8930 5.6176 1.2952 11 14 5.7864 4.8208 -0.4562 12 6 4.0723 2.5353 0.0011 13 6 3.4461 1.2852 -0.0005 14 6 4.2539 0.0534 -0.0016 15 8 3.7066 -1.0327 -0.0026 16 7 5.5994 0.1300 -0.0016 17 6 6.4026 -1.0905 0.1070 18 6 6.2966 -1.7422 1.4616 19 6 5.7367 -1.0504 2.5195 20 6 5.6351 -1.6499 3.7609 21 6 6.1027 -2.9373 3.9471 22 6 6.6673 -3.6271 2.8906 23 6 6.7638 -3.0298 1.6478 24 6 7.8494 -0.9216 -0.3859 25 6 7.3375 -1.3190 -1.7805 26 1 8.0170 -1.9752 -2.3245 27 8 6.8890 -0.2116 -2.5645 28 6 6.2009 -2.0668 -1.0638 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2148 2.3165 0.0005 33 1 -0.5426 4.0443 -0.8906 34 1 -0.5439 4.0434 0.8894 35 1 -0.7057 5.5767 0.0005 36 1 3.5058 5.6779 -0.7333 37 1 4.3048 5.0939 1.9961 38 1 6.4651 6.1415 -0.4655 39 1 6.4522 3.9138 0.5130 40 1 5.1505 2.5995 0.0011 41 1 6.0362 0.9931 -0.0736 42 1 5.3757 -0.0428 2.3752 43 1 5.1942 -1.1109 4.5865 44 1 6.0274 -3.4041 4.9180 45 1 7.0331 -4.6329 3.0361 46 1 7.2053 -3.5685 0.8224 47 1 8.2128 0.1045 -0.3302 48 1 8.5445 -1.6419 0.0456 49 1 7.5993 0.2627 -3.0177 50 1 6.4453 -3.1002 -0.8177 51 1 5.2328 -1.9663 -1.5544 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_12297780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:48:10 Heat of formation + Delta-G solvation = -81.360457 kcal Electronic energy + Delta-G solvation = -37903.656347 eV Core-core repulsion = 33123.447105 eV Total energy + Delta-G solvation = -4780.209242 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.165 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.31814 -41.69651 -40.20410 -39.52787 -39.10062 -38.48855 -37.06849 -36.11609 -34.10561 -32.26978 -31.96185 -31.63974 -31.34574 -28.99873 -28.20684 -26.91091 -26.20744 -25.87733 -24.49833 -23.52510 -22.90587 -22.32613 -21.53139 -20.26797 -20.01722 -18.90703 -18.55245 -18.25093 -18.02773 -17.64105 -17.22382 -16.94404 -16.64087 -16.53455 -16.36856 -16.31506 -15.90338 -15.76807 -15.71191 -15.53402 -15.41483 -15.13208 -14.96674 -14.53916 -14.34877 -14.23300 -14.04208 -13.91198 -13.62136 -13.44832 -13.27103 -13.10572 -12.89473 -12.69990 -12.55181 -12.53395 -12.27946 -12.22396 -12.18674 -11.91752 -11.80887 -11.68384 -11.37599 -10.86475 -10.74577 -10.55744 -10.02500 -9.92641 -9.84198 -9.56868 -9.19506 -4.91396 -0.25059 0.06894 0.40714 0.47605 1.29600 1.55020 1.77636 1.95641 2.06762 2.11116 2.17224 2.62498 2.79355 3.21503 3.42084 3.45280 3.51889 3.57800 3.68429 3.73509 3.75593 3.77967 3.90105 4.04592 4.10412 4.11369 4.16333 4.23655 4.23810 4.24643 4.26420 4.28369 4.41857 4.55168 4.60250 4.62856 4.64134 4.65781 4.73065 4.75308 4.87541 4.90620 4.93580 5.01448 5.02717 5.07104 5.08639 5.16057 5.29222 5.45687 5.55266 5.60137 5.79113 6.02749 6.08510 6.28416 6.53969 6.57676 7.03211 7.33089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.304 6.304 3 C 0.217 3.783 4 C -0.311 4.311 5 C 0.214 3.786 6 O -0.311 6.311 7 C 0.012 3.988 8 C -0.197 4.197 9 C -0.071 4.071 10 O -0.545 6.545 11 Si 0.761 3.239 12 C -0.001 4.001 13 C -0.225 4.225 14 C 0.568 3.432 15 O -0.550 6.550 16 N -0.692 5.692 17 C 0.189 3.811 18 C -0.080 4.080 19 C -0.123 4.123 20 C -0.133 4.133 21 C -0.134 4.134 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.149 4.149 25 C 0.090 3.910 26 H 0.094 0.906 27 O -0.562 6.562 28 C -0.139 4.139 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.383 0.617 38 H -0.297 1.297 39 H -0.258 1.258 40 H 0.158 0.842 41 H 0.408 0.592 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.136 0.864 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.096 0.904 48 H 0.119 0.881 49 H 0.399 0.601 50 H 0.112 0.888 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 0.825 -2.316 3.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.214 6.214 3 C 0.168 3.832 4 C -0.330 4.330 5 C 0.166 3.834 6 O -0.223 6.223 7 C -0.082 4.082 8 C -0.198 4.198 9 C -0.179 4.179 10 O -0.353 6.353 11 Si 0.664 3.336 12 C -0.020 4.020 13 C -0.229 4.229 14 C 0.357 3.643 15 O -0.429 6.429 16 N -0.344 5.344 17 C 0.102 3.898 18 C -0.081 4.081 19 C -0.141 4.141 20 C -0.151 4.151 21 C -0.152 4.152 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.187 4.187 25 C 0.030 3.970 26 H 0.112 0.888 27 O -0.370 6.370 28 C -0.177 4.177 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.180 0.820 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.232 0.768 38 H -0.224 1.224 39 H -0.184 1.184 40 H 0.175 0.825 41 H 0.246 0.754 42 H 0.127 0.873 43 H 0.144 0.856 44 H 0.154 0.846 45 H 0.161 0.839 46 H 0.161 0.839 47 H 0.115 0.885 48 H 0.137 0.863 49 H 0.249 0.751 50 H 0.130 0.870 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.913 0.434 -2.176 2.929 hybrid contribution -0.677 0.592 1.203 1.502 sum 1.236 1.026 -0.972 1.878 Atomic orbital electron populations 1.23454 0.76652 1.05649 1.02582 1.86375 1.23088 1.25917 1.86056 1.18969 0.91064 0.84694 0.88474 1.21412 1.01947 0.90794 1.18882 1.18902 0.90911 0.84859 0.88695 1.86140 1.21016 1.28616 1.86513 1.23462 0.76324 1.05847 1.02560 1.19483 0.90805 0.96502 1.13020 1.25098 1.12573 0.92309 0.87934 1.86611 1.80755 1.50685 1.17256 0.94221 0.71234 0.79263 0.88857 1.20977 1.00093 0.89072 0.91814 1.19197 0.90860 0.93936 1.18958 1.17928 0.82220 0.88369 0.75754 1.90815 1.72156 1.29970 1.49913 1.45262 1.04826 1.09336 1.74993 1.20000 0.93344 0.85788 0.90635 1.20015 0.98493 0.94988 0.94619 1.21012 0.99740 1.00038 0.93355 1.21344 1.00212 0.96185 0.97402 1.21426 0.98887 0.94812 1.00088 1.21443 0.99160 1.00757 0.92834 1.21183 1.00444 0.94063 0.98174 1.24030 0.92972 1.04991 0.96699 1.22648 0.95121 0.88727 0.90473 0.88839 1.86503 1.39027 1.45461 1.66033 1.23546 0.99716 0.99014 0.95409 0.90932 0.87021 0.91227 0.82027 0.91022 0.91597 0.86230 0.86780 0.76827 1.22427 1.18414 0.82454 0.75448 0.87324 0.85588 0.84650 0.83948 0.83947 0.88531 0.86316 0.75094 0.86973 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.81 113.37 1.11 1.12 16 2 O -0.30 -3.15 8.56 -68.83 -0.59 -3.74 16 3 C 0.22 1.75 6.69 22.82 0.15 1.91 16 4 C -0.31 -1.04 8.01 22.42 0.18 -0.86 16 5 C 0.21 0.83 6.67 22.60 0.15 0.98 16 6 O -0.31 -1.04 9.80 -90.32 -0.89 -1.92 16 7 C 0.01 -0.05 9.80 113.37 1.11 1.06 16 8 C -0.20 -0.46 5.27 -19.80 -0.10 -0.56 16 9 C -0.07 -0.07 2.37 71.24 0.17 0.09 16 10 O -0.55 -2.22 12.88 -148.98 -1.92 -4.14 16 11 Si 0.76 -2.35 30.23 68.60 2.07 -0.28 16 12 C 0.00 0.00 8.13 22.50 0.18 0.18 16 13 C -0.23 -1.67 5.89 -20.00 -0.12 -1.78 16 14 C 0.57 5.88 6.25 86.63 0.54 6.42 16 15 O -0.55 -10.06 13.56 16.86 0.23 -9.83 16 16 N -0.69 -2.62 3.70 -427.27 -1.58 -4.21 16 17 C 0.19 0.55 0.94 3.38 0.00 0.55 16 18 C -0.08 -0.48 4.88 -19.86 -0.10 -0.58 16 19 C -0.12 -1.01 8.98 22.27 0.20 -0.81 16 20 C -0.13 -0.92 10.05 22.27 0.22 -0.70 16 21 C -0.13 -0.65 10.05 22.27 0.22 -0.42 16 22 C -0.12 -0.43 10.05 22.27 0.22 -0.21 16 23 C -0.12 -0.44 8.71 22.27 0.19 -0.24 16 24 C -0.15 0.65 7.13 31.12 0.22 0.87 16 25 C 0.09 -0.26 5.27 31.12 0.16 -0.10 16 26 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 27 O -0.56 1.17 13.09 -148.98 -1.95 -0.78 16 28 C -0.14 -0.54 6.56 31.12 0.20 -0.33 16 29 H 0.07 -0.21 7.66 -2.39 -0.02 -0.23 16 30 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.07 -0.17 7.66 -2.39 -0.02 -0.19 16 32 H 0.16 -0.27 4.50 -2.91 -0.01 -0.28 16 33 H 0.07 -0.46 7.65 -2.38 -0.02 -0.48 16 34 H 0.07 -0.36 7.65 -2.39 -0.02 -0.38 16 35 H 0.12 -0.83 8.14 -2.39 -0.02 -0.85 16 36 H 0.11 0.17 7.82 -2.39 -0.02 0.15 16 37 H 0.38 -0.80 8.70 -74.06 -0.64 -1.45 16 38 H -0.30 -1.30 7.11 99.48 0.71 -0.60 16 39 H -0.26 0.76 6.69 99.48 0.67 1.43 16 40 H 0.16 -0.55 3.18 -2.91 -0.01 -0.56 16 41 H 0.41 -0.56 6.72 -92.71 -0.62 -1.18 16 42 H 0.11 0.89 6.74 -2.91 -0.02 0.87 16 43 H 0.13 0.51 8.06 -2.91 -0.02 0.49 16 44 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 45 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 46 H 0.14 -0.20 6.55 -2.91 -0.02 -0.22 16 47 H 0.10 -0.68 8.10 -2.39 -0.02 -0.70 16 48 H 0.12 -0.79 7.79 -2.38 -0.02 -0.81 16 49 H 0.40 -4.56 9.12 -74.06 -0.68 -5.23 16 50 H 0.11 0.12 6.22 -2.39 -0.01 0.10 16 51 H 0.05 0.67 6.95 -2.39 -0.02 0.65 16 Total: 0.00 -28.09 408.71 -0.60 -28.70 By element: Atomic # 1 Polarization: -9.47 SS G_CDS: -0.92 Total: -10.40 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 4.94 Total: 6.59 kcal Atomic # 7 Polarization: -2.62 SS G_CDS: -1.58 Total: -4.21 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -5.12 Total: -20.41 kcal Atomic # 14 Polarization: -2.35 SS G_CDS: 2.07 Total: -0.28 kcal Total: -28.09 -0.60 -28.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_12297780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.662 kcal (2) G-P(sol) polarization free energy of solvation -28.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds