Wall clock time and date at job start Sat Mar 6 2021 23:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.47420 * 2 1 4 4 C 1.50705 * 109.47378 * 239.99878 * 2 1 3 5 5 C 1.37860 * 119.88584 * 299.98170 * 4 2 1 6 6 C 1.39663 * 119.87089 * 179.97438 * 5 4 2 7 7 C 1.47695 * 120.16326 * 180.02562 * 6 5 4 8 8 O 1.21565 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99900 * 359.97438 * 7 6 5 10 10 C 1.46507 * 120.00122 * 174.79601 * 9 7 6 11 11 C 1.50703 * 112.84728 * 76.02756 * 10 9 7 12 12 C 1.38227 * 119.99674 * 184.86370 * 11 10 9 13 13 C 1.38234 * 119.99927 * 179.74459 * 12 11 10 14 14 C 1.38238 * 120.00162 * 0.55098 * 13 12 11 15 15 C 1.38240 * 119.99408 * 359.70498 * 14 13 12 16 16 C 1.38229 * 119.99973 * 5.13839 * 11 10 9 17 17 C 1.53778 * 113.61152 * 304.83455 * 10 9 7 18 18 C 1.53777 * 87.07869 * 270.88273 * 17 10 9 19 19 H 1.09008 * 113.61405 * 220.01921 * 18 17 10 20 20 O 1.42900 * 113.61734 * 89.12251 * 18 17 10 21 21 C 1.53776 * 113.61505 * 207.33483 * 10 9 7 22 22 C 1.39821 * 119.67131 * 359.75038 * 6 5 4 23 23 F 1.35100 * 120.11145 * 180.25248 * 22 6 5 24 24 C 1.38321 * 119.77800 * 0.52008 * 22 6 5 25 25 C 1.38212 * 120.11687 * 359.47740 * 24 22 6 26 26 H 0.96700 * 113.99858 * 60.00145 * 1 2 3 27 27 H 1.09003 * 109.47179 * 119.99872 * 2 1 3 28 28 H 1.48502 * 109.99988 * 298.67894 * 3 2 1 29 29 H 1.48498 * 109.99718 * 59.99815 * 3 2 1 30 30 H 1.07993 * 120.06495 * 359.97438 * 5 4 2 31 31 H 0.97005 * 120.00145 * 354.79728 * 9 7 6 32 32 H 1.08003 * 120.00493 * 0.02562 * 12 11 10 33 33 H 1.08003 * 120.00390 * 180.27792 * 13 12 11 34 34 H 1.07997 * 120.00689 * 179.72368 * 14 13 12 35 35 H 1.07997 * 119.99551 * 180.02562 * 15 14 13 36 36 H 1.08001 * 120.00363 * 359.97438 * 16 11 10 37 37 H 1.08997 * 113.61512 * 25.42811 * 17 10 9 38 38 H 1.08998 * 113.61186 * 156.25116 * 17 10 9 39 39 H 0.96701 * 114.00326 * 180.02562 * 20 18 17 40 40 H 1.09000 * 113.61565 * 203.66066 * 21 10 9 41 41 H 1.09000 * 113.61688 * 334.57137 * 21 10 9 42 42 H 1.07996 * 119.94548 * 179.75538 * 24 22 6 43 43 H 1.08002 * 119.83006 * 180.22948 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.5972 -2.0304 -1.4461 6 6 2.0626 -2.6884 -2.5868 7 6 1.7081 -4.1023 -2.8245 8 8 2.1151 -4.6723 -3.8181 9 7 0.9342 -4.7610 -1.9392 10 6 0.4882 -6.1260 -2.2295 11 6 1.5765 -7.1505 -2.0370 12 6 1.3466 -8.4732 -2.3663 13 6 2.3466 -9.4120 -2.1947 14 6 3.5728 -9.0303 -1.6832 15 6 3.8009 -7.7084 -1.3489 16 6 2.8028 -6.7686 -1.5259 17 6 -0.2536 -6.2597 -3.5698 18 6 -1.5451 -5.9453 -2.7965 19 1 -2.4006 -6.5414 -3.1144 20 8 -1.8390 -4.5491 -2.7166 21 6 -0.8388 -6.4986 -1.5476 22 6 2.8609 -2.0002 -3.5055 23 9 3.3116 -2.6265 -4.6145 24 6 3.1922 -0.6776 -3.2724 25 6 2.7268 -0.0352 -2.1406 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5138 0.8900 28 1 1.5880 2.4585 -1.2243 29 1 1.5615 2.4678 1.2085 30 1 0.9769 -2.5547 -0.7344 31 1 0.6724 -4.3313 -1.1099 32 1 0.3872 -8.7724 -2.7618 33 1 2.1685 -10.4447 -2.4561 34 1 4.3526 -9.7645 -1.5449 35 1 4.7590 -7.4101 -0.9497 36 1 2.9811 -5.7359 -1.2649 37 1 0.0171 -5.4943 -4.2970 38 1 -0.2263 -7.2670 -3.9854 39 1 -2.6500 -4.3450 -2.2310 40 1 -0.9726 -7.5716 -1.4097 41 1 -1.0404 -5.9260 -0.6423 42 1 3.8119 -0.1447 -3.9782 43 1 2.9853 0.9986 -1.9650 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_12335834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:48:15 Heat of formation + Delta-G solvation = -59.048584 kcal Electronic energy + Delta-G solvation = -30732.851402 eV Core-core repulsion = 26432.595322 eV Total energy + Delta-G solvation = -4300.256080 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.126 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -50.03210 -42.25348 -40.76802 -39.57609 -39.16663 -37.57755 -36.26654 -34.43752 -32.55787 -32.26848 -31.67855 -31.60782 -27.02332 -26.65138 -26.32670 -25.06918 -23.64615 -23.15285 -22.37038 -21.58976 -20.33302 -19.33908 -18.70251 -18.38486 -18.24832 -17.89651 -17.38472 -16.91887 -16.77057 -16.45519 -16.22390 -16.11565 -15.83181 -15.71538 -15.51497 -15.25262 -15.03128 -14.69012 -14.46605 -14.40385 -14.31003 -14.04420 -13.63331 -13.57533 -13.29024 -13.17984 -13.02495 -12.82431 -12.33822 -12.30608 -12.25468 -11.97007 -11.74787 -11.54627 -11.03352 -10.99978 -10.63256 -10.37621 -10.09474 -9.86464 -9.84161 -9.61240 -4.88887 -0.49624 -0.04521 0.37246 0.45285 1.30423 1.63071 1.63264 1.89286 2.00786 2.47972 2.75273 3.03330 3.09702 3.31059 3.39188 3.47935 3.52078 3.56478 3.63423 3.65530 3.81736 3.95986 4.04120 4.08406 4.10338 4.22284 4.34106 4.47395 4.57902 4.59838 4.60440 4.63609 4.76202 4.79550 4.81389 4.84411 4.93660 4.94933 4.95931 5.03084 5.10773 5.12021 5.35687 5.52370 5.58112 5.58408 5.70486 6.05819 6.36938 6.49005 6.88106 7.09443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.076 4.076 3 Si 0.762 3.238 4 C -0.131 4.131 5 C -0.024 4.024 6 C -0.187 4.187 7 C 0.559 3.441 8 O -0.558 6.558 9 N -0.681 5.681 10 C 0.189 3.811 11 C -0.085 4.085 12 C -0.120 4.120 13 C -0.124 4.124 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.121 4.121 17 C -0.139 4.139 18 C 0.087 3.913 19 H 0.095 0.905 20 O -0.565 6.565 21 C -0.146 4.146 22 C 0.131 3.869 23 F -0.138 7.138 24 C -0.153 4.153 25 C -0.052 4.052 26 H 0.388 0.612 27 H 0.136 0.864 28 H -0.278 1.278 29 H -0.304 1.304 30 H 0.154 0.846 31 H 0.412 0.588 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.114 0.886 39 H 0.397 0.603 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.167 0.833 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 1.453 5.617 6.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.185 4.185 3 Si 0.667 3.333 4 C -0.131 4.131 5 C -0.043 4.043 6 C -0.191 4.191 7 C 0.347 3.653 8 O -0.437 6.437 9 N -0.333 5.333 10 C 0.102 3.898 11 C -0.086 4.086 12 C -0.138 4.138 13 C -0.142 4.142 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.139 4.139 17 C -0.177 4.177 18 C 0.028 3.972 19 H 0.112 0.888 20 O -0.373 6.373 21 C -0.184 4.184 22 C 0.111 3.889 23 F -0.116 7.116 24 C -0.171 4.171 25 C -0.070 4.070 26 H 0.237 0.763 27 H 0.154 0.846 28 H -0.205 1.205 29 H -0.232 1.232 30 H 0.171 0.829 31 H 0.251 0.749 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.132 0.868 39 H 0.248 0.752 40 H 0.140 0.860 41 H 0.115 0.885 42 H 0.184 0.816 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.390 1.583 5.072 5.492 hybrid contribution -1.244 -0.109 -0.396 1.311 sum -2.635 1.474 4.676 5.566 Atomic orbital electron populations 1.86587 1.18026 1.80273 1.50277 1.25195 0.83718 1.11549 0.98013 0.94147 0.90292 0.72021 0.76813 1.20415 1.00031 0.94396 0.98276 1.21150 0.95207 0.94103 0.93815 1.20112 1.05381 0.94718 0.98924 1.18205 0.78119 0.86044 0.82917 1.90838 1.54013 1.69201 1.29673 1.45204 1.51400 1.14382 1.22268 1.20039 0.91504 0.80211 0.98017 1.20011 0.95010 0.94577 0.99020 1.21161 1.00560 0.91885 1.00237 1.21458 0.93270 1.00586 0.98867 1.21459 0.98162 0.96254 0.99182 1.21375 0.99382 0.93883 1.00485 1.21001 0.93760 0.99165 1.00014 1.23534 0.94916 1.03031 0.96185 1.22693 0.96503 0.82883 0.95142 0.88758 1.86490 1.49006 1.22703 1.79097 1.24022 0.91346 1.04051 0.98953 1.18223 0.95429 0.91977 0.83309 1.91554 1.86767 1.82885 1.50390 1.21384 1.03285 0.91752 1.00696 1.21375 0.93566 1.00735 0.91286 0.76288 0.84598 1.20462 1.23179 0.82876 0.74915 0.83872 0.83826 0.84486 0.85360 0.87469 0.92959 0.86775 0.75228 0.85974 0.88540 0.81566 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.66 12.76 -148.98 -1.90 -0.25 16 2 C -0.08 0.46 2.82 71.24 0.20 0.67 16 3 Si 0.76 -4.97 29.78 68.60 2.04 -2.93 16 4 C -0.13 0.55 5.39 -19.90 -0.11 0.44 16 5 C -0.02 0.03 9.09 22.52 0.20 0.23 16 6 C -0.19 -1.08 5.88 -20.05 -0.12 -1.20 16 7 C 0.56 5.57 6.18 86.74 0.54 6.10 16 8 O -0.56 -10.50 13.58 -3.92 -0.05 -10.56 16 9 N -0.68 -2.19 3.62 -426.90 -1.54 -3.74 16 10 C 0.19 0.54 0.97 3.38 0.00 0.54 16 11 C -0.08 -0.48 5.06 -19.87 -0.10 -0.58 16 12 C -0.12 -0.36 8.43 22.27 0.19 -0.17 16 13 C -0.12 -0.36 10.05 22.27 0.22 -0.13 16 14 C -0.13 -0.57 10.05 22.27 0.22 -0.35 16 15 C -0.13 -0.86 10.05 22.27 0.22 -0.64 16 16 C -0.12 -0.97 9.00 22.27 0.20 -0.77 16 17 C -0.14 -0.64 6.53 31.12 0.20 -0.44 16 18 C 0.09 -0.18 5.28 31.12 0.16 -0.01 16 19 H 0.09 -0.56 8.14 -2.38 -0.02 -0.58 16 20 O -0.56 0.26 13.09 -148.98 -1.95 -1.69 16 21 C -0.15 0.62 7.11 31.12 0.22 0.84 16 22 C 0.13 0.96 7.29 22.67 0.17 1.12 16 23 F -0.14 -1.99 15.55 44.97 0.70 -1.29 16 24 C -0.15 0.08 10.01 22.28 0.22 0.30 16 25 C -0.05 0.26 8.66 22.31 0.19 0.45 16 26 H 0.39 -3.03 8.70 -74.06 -0.64 -3.68 16 27 H 0.14 -1.16 7.96 -2.39 -0.02 -1.18 16 28 H -0.28 0.79 7.11 99.48 0.71 1.50 16 29 H -0.30 -0.64 7.11 99.48 0.71 0.07 16 30 H 0.15 -0.78 6.42 -2.91 -0.02 -0.80 16 31 H 0.41 -0.90 6.81 -92.70 -0.63 -1.53 16 32 H 0.14 -0.32 6.74 -2.91 -0.02 -0.34 16 33 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 34 H 0.14 0.03 8.06 -2.91 -0.02 0.01 16 35 H 0.13 0.45 8.06 -2.91 -0.02 0.42 16 36 H 0.11 0.87 6.53 -2.91 -0.02 0.86 16 37 H 0.05 0.69 6.67 -2.39 -0.02 0.67 16 38 H 0.11 0.22 6.66 -2.39 -0.02 0.20 16 39 H 0.40 -3.67 9.12 -74.06 -0.68 -4.34 16 40 H 0.12 -0.85 7.29 -2.39 -0.02 -0.87 16 41 H 0.10 -0.65 8.13 -2.39 -0.02 -0.67 16 42 H 0.17 -0.79 8.06 -2.91 -0.02 -0.81 16 43 H 0.17 -1.77 4.86 -2.91 -0.01 -1.79 16 Total: 0.00 -26.53 356.68 -0.67 -27.20 By element: Atomic # 1 Polarization: -12.35 SS G_CDS: -0.81 Total: -13.16 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 2.85 Total: 6.41 kcal Atomic # 7 Polarization: -2.19 SS G_CDS: -1.54 Total: -3.74 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -3.90 Total: -12.50 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.70 Total: -1.29 kcal Atomic # 14 Polarization: -4.97 SS G_CDS: 2.04 Total: -2.93 kcal Total: -26.53 -0.67 -27.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_12335834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.848 kcal (2) G-P(sol) polarization free energy of solvation -26.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds