Wall clock time and date at job start Sat Mar 6 2021 23:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86290 * 109.46987 * 2 1 4 4 C 1.50702 * 109.46977 * 239.99869 * 2 1 3 5 5 C 1.38239 * 119.99801 * 300.00014 * 4 2 1 6 6 C 1.38238 * 119.99651 * 179.97438 * 5 4 2 7 7 C 1.38236 * 119.99862 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99959 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47206 * 90.00608 * 8 7 6 10 10 O 1.21281 * 119.99742 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00474 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00076 * 184.82865 * 11 9 8 13 13 C 1.50697 * 112.85231 * 305.22180 * 12 11 9 14 14 C 1.38239 * 120.00035 * 334.48929 * 13 12 11 15 15 C 1.38234 * 120.00214 * 179.79005 * 14 13 12 16 16 C 1.38231 * 119.99553 * 0.44025 * 15 14 13 17 17 C 1.38238 * 120.00543 * 359.81068 * 16 15 14 18 18 C 1.38236 * 119.99777 * 359.97438 * 17 16 15 19 19 C 1.53777 * 113.61411 * 174.02228 * 12 11 9 20 20 C 1.53785 * 87.17592 * 270.76103 * 19 12 11 21 21 H 1.08991 * 113.61617 * 220.06364 * 20 19 12 22 22 O 1.42906 * 113.61580 * 89.15504 * 20 19 12 23 23 C 1.53782 * 113.68643 * 76.48792 * 12 11 9 24 24 C 1.38239 * 120.00383 * 0.26091 * 7 6 5 25 25 C 1.38233 * 119.99374 * 359.48912 * 24 7 6 26 26 H 0.96693 * 113.99936 * 60.00059 * 1 2 3 27 27 H 1.09004 * 109.47082 * 120.00082 * 2 1 3 28 28 H 1.48501 * 110.00332 * 59.99851 * 3 2 1 29 29 H 1.48502 * 110.00013 * 181.31857 * 3 2 1 30 30 H 1.07994 * 120.00125 * 359.97438 * 5 4 2 31 31 H 1.07994 * 119.99729 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47374 * 330.00819 * 8 7 6 33 33 H 1.09002 * 109.47347 * 210.00536 * 8 7 6 34 34 H 0.96994 * 119.99552 * 4.83069 * 11 9 8 35 35 H 1.08005 * 119.99606 * 0.02562 * 14 13 12 36 36 H 1.07997 * 119.99968 * 180.27658 * 15 14 13 37 37 H 1.08004 * 120.00059 * 179.83477 * 16 15 14 38 38 H 1.07994 * 120.00435 * 179.97438 * 17 16 15 39 39 H 1.07997 * 120.00296 * 179.97438 * 18 17 16 40 40 H 1.08997 * 113.61347 * 25.34806 * 19 12 11 41 41 H 1.09001 * 113.61673 * 156.16957 * 19 12 11 42 42 H 0.96696 * 114.00088 * 180.02562 * 22 20 19 43 43 H 1.09001 * 113.61402 * 203.67575 * 23 12 11 44 44 H 1.09002 * 113.61609 * 334.49756 * 23 12 11 45 45 H 1.07993 * 120.00083 * 179.71822 * 24 7 6 46 46 H 1.08004 * 120.00226 * 180.25526 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.5974 -2.0339 -1.4492 6 6 2.0577 -2.6854 -2.5781 7 6 2.8525 -2.0136 -3.4881 8 6 3.3548 -2.7240 -4.7185 9 6 2.3622 -2.5505 -5.8391 10 8 1.3466 -1.9132 -5.6564 11 7 2.6025 -3.1044 -7.0441 12 6 1.6918 -2.8484 -8.1627 13 6 0.2599 -3.1916 -7.8420 14 6 -0.0242 -4.1376 -6.8748 15 6 -1.3377 -4.4493 -6.5775 16 6 -2.3670 -3.8216 -7.2538 17 6 -2.0829 -2.8794 -8.2246 18 6 -0.7695 -2.5645 -8.5188 19 6 2.1800 -3.4300 -9.5000 20 6 2.9113 -2.0961 -9.7259 21 1 2.8587 -1.7380 -10.7539 22 8 4.2385 -2.0741 -9.1964 23 6 1.8651 -1.4571 -8.7945 24 6 3.1913 -0.6919 -3.2664 25 6 2.7267 -0.0389 -2.1400 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5139 0.8900 28 1 1.5615 2.4679 1.2085 29 1 3.5346 1.7702 -0.0321 30 1 0.9769 -2.5588 -0.7380 31 1 1.7971 -3.7195 -2.7488 32 1 3.4758 -3.7853 -4.5014 33 1 4.3150 -2.3020 -5.0152 34 1 3.3784 -3.6726 -7.1706 35 1 0.7802 -4.6304 -6.3487 36 1 -1.5596 -5.1851 -5.8187 37 1 -3.3932 -4.0671 -7.0234 38 1 -2.8871 -2.3894 -8.7533 39 1 -0.5474 -1.8287 -9.2775 40 1 2.8505 -4.2818 -9.3868 41 1 1.3779 -3.6146 -10.2146 42 1 4.7034 -1.2377 -9.3351 43 1 0.9771 -1.1011 -9.3168 44 1 2.2801 -0.7160 -8.1114 45 1 3.8160 -0.1684 -3.9750 46 1 2.9880 0.9950 -1.9688 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_12335836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:48:18 Heat of formation + Delta-G solvation = -20.574796 kcal Electronic energy + Delta-G solvation = -29745.603827 eV Core-core repulsion = 25760.932453 eV Total energy + Delta-G solvation = -3984.671375 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.06322 -40.75908 -39.54245 -39.18973 -37.63822 -36.12977 -34.22524 -33.66394 -31.95415 -31.75241 -31.63768 -29.68463 -26.95526 -26.23296 -25.21124 -23.82457 -23.45277 -22.74329 -22.10408 -21.24720 -20.19903 -18.61726 -18.47245 -17.97162 -17.83200 -17.27893 -16.88820 -16.51071 -16.31708 -16.25952 -15.95274 -15.64874 -15.51359 -15.21392 -15.10022 -14.72871 -14.71450 -14.50023 -14.24779 -14.06747 -13.85131 -13.56726 -13.43752 -13.26891 -13.00711 -12.88179 -12.77060 -12.38197 -12.27604 -12.00015 -11.97902 -11.90367 -11.71432 -11.46164 -10.93343 -10.73794 -10.46691 -9.99436 -9.88878 -9.79477 -9.62761 -9.47835 -5.02423 0.23347 0.44107 0.45035 0.51930 1.28799 1.58926 1.72948 1.90633 2.14455 2.77247 2.83913 3.13949 3.47655 3.53682 3.62491 3.64814 3.70111 3.79990 3.86769 3.90380 3.98272 4.03596 4.11450 4.18451 4.23721 4.34436 4.40874 4.44461 4.47036 4.60374 4.61896 4.65581 4.70330 4.72394 4.81581 4.92449 4.99442 5.00275 5.02088 5.07170 5.10609 5.17074 5.36609 5.48717 5.52089 5.57497 5.58721 5.63395 5.80480 6.00462 6.12081 6.62962 6.68958 6.88256 7.37359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.077 4.077 3 Si 0.774 3.226 4 C -0.128 4.128 5 C -0.107 4.107 6 C -0.115 4.115 7 C -0.066 4.066 8 C -0.099 4.099 9 C 0.515 3.485 10 O -0.555 6.555 11 N -0.694 5.694 12 C 0.192 3.808 13 C -0.070 4.070 14 C -0.112 4.112 15 C -0.134 4.134 16 C -0.137 4.137 17 C -0.128 4.128 18 C -0.125 4.125 19 C -0.122 4.122 20 C 0.090 3.910 21 H 0.091 0.909 22 O -0.560 6.560 23 C -0.172 4.172 24 C -0.109 4.109 25 C -0.123 4.123 26 H 0.393 0.607 27 H 0.105 0.895 28 H -0.297 1.297 29 H -0.281 1.281 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.415 0.585 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.397 0.603 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.140 0.860 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.641 0.005 -6.787 7.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.187 4.187 3 Si 0.679 3.321 4 C -0.128 4.128 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.067 4.067 8 C -0.139 4.139 9 C 0.302 3.698 10 O -0.432 6.432 11 N -0.346 5.346 12 C 0.104 3.896 13 C -0.071 4.071 14 C -0.130 4.130 15 C -0.152 4.152 16 C -0.155 4.155 17 C -0.146 4.146 18 C -0.143 4.143 19 C -0.160 4.160 20 C 0.031 3.969 21 H 0.109 0.891 22 O -0.368 6.368 23 C -0.211 4.211 24 C -0.127 4.127 25 C -0.140 4.140 26 H 0.243 0.757 27 H 0.123 0.877 28 H -0.225 1.225 29 H -0.207 1.207 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.252 0.748 35 H 0.130 0.870 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.247 0.753 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.158 0.842 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.358 0.138 -5.521 6.463 hybrid contribution 0.257 -0.436 0.449 0.677 sum 3.614 -0.299 -5.071 6.235 Atomic orbital electron populations 1.86445 1.17534 1.82231 1.50328 1.25239 0.85106 1.11176 0.97179 0.93590 0.78050 0.75664 0.84756 1.20394 0.99679 0.95297 0.97421 1.21053 0.99291 0.94380 0.97809 1.21188 0.97356 1.00522 0.94263 1.19522 0.97553 0.94475 0.95146 1.20734 0.99068 1.03950 0.90110 1.20817 0.86905 0.78525 0.83589 1.90771 1.28512 1.41306 1.82610 1.45520 1.28702 1.51783 1.08620 1.19938 0.85771 0.97194 0.86649 1.19835 0.94795 0.96078 0.96392 1.20928 0.96448 0.98042 0.97563 1.21330 0.93176 1.00573 1.00165 1.21391 0.99768 0.97357 0.96939 1.21402 0.97121 0.97940 0.98117 1.21221 0.92347 1.00021 1.00759 1.23443 1.00133 0.97861 0.94527 1.22672 0.82001 0.96064 0.96197 0.89121 1.86364 1.26071 1.42111 1.82296 1.24218 1.01185 0.96120 0.99566 1.21196 1.00074 0.94075 0.97368 1.21152 0.98232 0.99964 0.94652 0.75742 0.87716 1.22490 1.20736 0.86111 0.85426 0.86074 0.85538 0.74786 0.87010 0.85656 0.85009 0.84411 0.84341 0.89369 0.86323 0.75279 0.87601 0.91889 0.84231 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.62 12.77 -148.98 -1.90 -4.52 16 2 C -0.08 -0.26 2.82 71.24 0.20 -0.06 16 3 Si 0.77 0.52 29.79 68.60 2.04 2.57 16 4 C -0.13 -0.57 5.39 -19.86 -0.11 -0.68 16 5 C -0.11 -0.63 9.61 22.27 0.21 -0.42 16 6 C -0.12 -0.52 9.70 22.27 0.22 -0.30 16 7 C -0.07 -0.18 4.37 -19.87 -0.09 -0.26 16 8 C -0.10 0.27 5.83 29.10 0.17 0.44 16 9 C 0.51 1.22 6.66 87.66 0.58 1.80 16 10 O -0.55 -6.17 14.33 -3.03 -0.04 -6.22 16 11 N -0.69 1.06 4.05 -423.93 -1.72 -0.66 16 12 C 0.19 -0.05 0.95 3.38 0.00 -0.05 16 13 C -0.07 -0.30 4.08 -19.87 -0.08 -0.38 16 14 C -0.11 -0.70 8.19 22.27 0.18 -0.52 16 15 C -0.13 -0.85 10.05 22.27 0.22 -0.62 16 16 C -0.14 -0.70 10.05 22.27 0.22 -0.48 16 17 C -0.13 -0.51 10.05 22.27 0.22 -0.28 16 18 C -0.13 -0.44 9.24 22.27 0.21 -0.24 16 19 C -0.12 0.53 7.15 31.12 0.22 0.75 16 20 C 0.09 -0.50 5.29 31.18 0.16 -0.33 16 21 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 22 O -0.56 2.98 13.10 -148.98 -1.95 1.02 16 23 C -0.17 0.29 6.98 31.18 0.22 0.51 16 24 C -0.11 -0.26 9.70 22.27 0.22 -0.04 16 25 C -0.12 -0.32 8.67 22.27 0.19 -0.13 16 26 H 0.39 -0.92 8.70 -74.06 -0.64 -1.57 16 27 H 0.11 0.44 7.96 -2.39 -0.02 0.42 16 28 H -0.30 -2.26 7.11 99.48 0.71 -1.55 16 29 H -0.28 -1.23 7.11 99.48 0.71 -0.52 16 30 H 0.12 0.68 8.06 -2.91 -0.02 0.65 16 31 H 0.13 0.25 8.06 -2.91 -0.02 0.22 16 32 H 0.12 -0.82 8.09 -2.39 -0.02 -0.84 16 33 H 0.13 -0.91 8.08 -2.39 -0.02 -0.93 16 34 H 0.41 -2.30 8.63 -92.71 -0.80 -3.09 16 35 H 0.11 0.55 7.07 -2.91 -0.02 0.53 16 36 H 0.13 0.43 8.06 -2.91 -0.02 0.41 16 37 H 0.13 0.20 8.06 -2.91 -0.02 0.18 16 38 H 0.14 -0.05 8.06 -2.91 -0.02 -0.07 16 39 H 0.14 -0.14 5.93 -2.91 -0.02 -0.16 16 40 H 0.09 -0.40 8.10 -2.39 -0.02 -0.42 16 41 H 0.12 -0.70 8.09 -2.39 -0.02 -0.72 16 42 H 0.40 -4.61 9.12 -74.06 -0.68 -5.28 16 43 H 0.11 -0.32 5.77 -2.39 -0.01 -0.34 16 44 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 46 H 0.14 -0.21 4.88 -2.91 -0.01 -0.23 16 Total: 0.00 -21.93 378.10 -1.43 -23.36 By element: Atomic # 1 Polarization: -13.21 SS G_CDS: -1.05 Total: -14.25 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 3.19 Total: -1.30 kcal Atomic # 7 Polarization: 1.06 SS G_CDS: -1.72 Total: -0.66 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -3.90 Total: -9.72 kcal Atomic # 14 Polarization: 0.52 SS G_CDS: 2.04 Total: 2.57 kcal Total: -21.93 -1.43 -23.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_12335836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.786 kcal (2) G-P(sol) polarization free energy of solvation -21.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds