Wall clock time and date at job start Sat Mar 6 2021 23:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86301 * 109.47340 * 2 1 4 4 C 1.50703 * 109.47239 * 239.99845 * 2 1 3 5 5 C 1.34449 * 126.48297 * 104.97061 * 4 2 1 6 6 N 1.36565 * 109.98855 * 180.02562 * 5 4 2 7 7 C 1.37835 * 109.85558 * 0.26664 * 6 5 4 8 8 C 1.38647 * 133.37647 * 179.73492 * 7 6 5 9 9 C 1.39320 * 119.66297 * 180.02562 * 8 7 6 10 10 C 1.47577 * 119.83286 * 179.97438 * 9 8 7 11 11 O 1.21597 * 119.99714 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00102 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99758 * 174.79028 * 12 10 9 14 14 C 1.50704 * 112.84776 * 76.03583 * 13 12 10 15 15 C 1.38233 * 119.99990 * 184.85836 * 14 13 12 16 16 C 1.38242 * 119.99948 * 179.81104 * 15 14 13 17 17 C 1.38236 * 119.99827 * 0.41793 * 16 15 14 18 18 C 1.38237 * 119.99709 * 359.81363 * 17 16 15 19 19 C 1.38230 * 120.00298 * 359.97438 * 18 17 16 20 20 C 1.53777 * 113.61785 * 304.83750 * 13 12 10 21 21 C 1.53774 * 87.08070 * 270.88259 * 20 13 12 22 22 H 1.09005 * 113.61280 * 219.93252 * 21 20 13 23 23 O 1.42903 * 113.61450 * 89.11731 * 21 20 13 24 24 C 1.53781 * 87.08363 * 334.56574 * 21 20 13 25 25 C 1.40209 * 120.33718 * 0.02562 * 9 8 7 26 26 C 1.36230 * 120.37468 * 359.53259 * 25 9 8 27 27 C 1.39873 * 119.96208 * 0.69995 * 26 25 9 28 28 H 0.96704 * 114.00202 * 300.00032 * 1 2 3 29 29 H 1.08998 * 109.47168 * 120.00227 * 2 1 3 30 30 H 1.48494 * 110.00039 * 178.68422 * 3 2 1 31 31 H 1.48501 * 109.99492 * 300.00178 * 3 2 1 32 32 H 1.07999 * 125.00556 * 0.02562 * 5 4 2 33 33 H 0.96996 * 125.07456 * 180.02562 * 6 5 4 34 34 H 1.07995 * 120.16978 * 0.02634 * 8 7 6 35 35 H 0.96998 * 120.00259 * 354.80059 * 12 10 9 36 36 H 1.07998 * 120.00148 * 359.97438 * 15 14 13 37 37 H 1.07997 * 119.99874 * 180.21097 * 16 15 14 38 38 H 1.08001 * 120.00046 * 179.79652 * 17 16 15 39 39 H 1.08005 * 119.99575 * 179.97438 * 18 17 16 40 40 H 1.08000 * 119.99662 * 179.97438 * 19 18 17 41 41 H 1.08996 * 113.61528 * 25.43735 * 20 13 12 42 42 H 1.09004 * 113.61664 * 156.24867 * 20 13 12 43 43 H 0.96703 * 113.99603 * 179.97438 * 23 21 20 44 44 H 1.08994 * 113.61483 * 270.88572 * 24 21 20 45 45 H 1.08997 * 113.61384 * 139.97627 * 24 21 20 46 46 H 1.08004 * 119.80791 * 180.02562 * 25 9 8 47 47 H 1.08005 * 120.01946 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4611 -0.1364 -2.3247 6 7 2.8026 -1.0947 -3.2357 7 6 2.4886 -2.3428 -2.7423 8 6 2.6183 -3.6271 -3.2483 9 6 2.1958 -4.7143 -2.4864 10 6 2.3316 -6.0829 -3.0216 11 8 2.8108 -6.2593 -4.1252 12 7 1.9245 -7.1371 -2.2873 13 6 1.9529 -8.4846 -2.8617 14 6 3.3420 -9.0659 -2.9219 15 6 3.5535 -10.2894 -3.5293 16 6 4.8284 -10.8208 -3.5880 17 6 5.8903 -10.1326 -3.0315 18 6 5.6780 -8.9113 -2.4199 19 6 4.4039 -8.3779 -2.3651 20 6 1.1759 -8.6075 -4.1830 21 6 -0.0622 -8.9383 -3.3330 22 1 -0.6856 -9.7253 -3.7574 23 8 -0.8122 -7.7866 -2.9417 24 6 0.9108 -9.4365 -2.2513 25 6 1.6414 -4.5148 -1.2142 26 6 1.5186 -3.2569 -0.7058 27 6 1.9336 -2.1548 -1.4606 28 1 -0.3934 0.4417 0.7651 29 1 1.7923 -0.5139 0.8899 30 1 3.5345 1.7702 0.0320 31 1 1.5614 2.4678 -1.2085 32 1 2.5966 0.9261 -2.4629 33 1 3.2030 -0.9226 -4.1023 34 1 3.0447 -3.7839 -4.2281 35 1 1.6126 -7.0038 -1.3786 36 1 2.7232 -10.8290 -3.9604 37 1 4.9941 -11.7752 -4.0656 38 1 6.8858 -10.5493 -3.0745 39 1 6.5076 -8.3738 -1.9848 40 1 4.2380 -7.4239 -1.8868 41 1 1.0922 -7.6682 -4.7294 42 1 1.5097 -9.4339 -4.8106 43 1 -1.5924 -7.9883 -2.4072 44 1 1.1711 -10.4903 -2.3501 45 1 0.6130 -9.1662 -1.2382 46 1 1.3170 -5.3638 -0.6307 47 1 1.0902 -3.1098 0.2747 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12891110_12335838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:48:23 Heat of formation + Delta-G solvation = 19.821343 kcal Electronic energy + Delta-G solvation = -32609.290161 eV Core-core repulsion = 28304.492302 eV Total energy + Delta-G solvation = -4304.797859 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.47332 -41.98648 -39.82073 -39.16964 -37.74475 -37.39836 -36.17653 -34.00199 -33.30611 -31.72634 -31.55807 -30.71997 -30.39555 -26.97141 -26.51149 -25.98078 -24.42146 -23.55808 -23.36305 -22.35693 -21.40618 -20.55907 -20.17626 -19.20772 -18.62884 -18.36903 -18.25390 -17.79797 -17.26243 -16.76811 -16.38144 -16.03408 -15.83748 -15.58035 -15.42968 -15.38501 -15.12733 -15.02883 -14.85786 -14.74546 -14.62150 -14.36116 -14.17110 -13.93914 -13.76846 -13.53429 -13.25623 -13.16520 -12.92086 -12.58484 -12.51702 -12.30448 -12.14083 -12.03860 -11.87512 -11.84911 -11.41439 -10.97897 -10.71065 -10.65880 -10.20907 -9.94339 -9.71412 -9.47837 -9.29386 -8.77251 -5.03195 -0.19142 0.46126 0.50992 0.60695 1.28825 1.36788 1.64509 1.88976 1.95029 2.11709 2.24375 2.87585 3.00723 3.07110 3.44104 3.55111 3.59031 3.63696 3.72821 3.73142 3.77403 3.92654 4.03247 4.12947 4.14909 4.18746 4.26870 4.29250 4.34810 4.44117 4.52653 4.59553 4.62654 4.65866 4.68582 4.76271 4.77675 4.85734 4.99407 5.03719 5.15012 5.15321 5.21107 5.31039 5.48795 5.49403 5.54998 5.64645 5.65886 5.72531 5.87101 6.03494 6.17799 6.38779 6.61816 6.66397 6.72053 7.38889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.033 4.033 3 Si 0.684 3.316 4 C -0.163 4.163 5 C 0.071 3.929 6 N -0.584 5.584 7 C 0.083 3.917 8 C -0.057 4.057 9 C -0.116 4.116 10 C 0.569 3.431 11 O -0.528 6.528 12 N -0.696 5.696 13 C 0.200 3.800 14 C -0.075 4.075 15 C -0.114 4.114 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.100 4.100 20 C -0.128 4.128 21 C 0.079 3.921 22 H 0.074 0.926 23 O -0.543 6.543 24 C -0.164 4.164 25 C -0.110 4.110 26 C -0.071 4.071 27 C -0.063 4.063 28 H 0.379 0.621 29 H 0.071 0.929 30 H -0.256 1.256 31 H -0.254 1.254 32 H 0.169 0.831 33 H 0.422 0.578 34 H 0.136 0.864 35 H 0.403 0.597 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.380 0.620 44 H 0.106 0.894 45 H 0.082 0.918 46 H 0.126 0.874 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 0.496 5.482 5.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.145 4.145 3 Si 0.585 3.415 4 C -0.171 4.171 5 C -0.058 4.058 6 N -0.186 5.186 7 C -0.023 4.023 8 C -0.079 4.079 9 C -0.121 4.121 10 C 0.357 3.643 11 O -0.405 6.405 12 N -0.347 5.347 13 C 0.112 3.888 14 C -0.076 4.076 15 C -0.132 4.132 16 C -0.136 4.136 17 C -0.140 4.140 18 C -0.137 4.137 19 C -0.118 4.118 20 C -0.166 4.166 21 C 0.020 3.980 22 H 0.091 0.909 23 O -0.348 6.348 24 C -0.202 4.202 25 C -0.130 4.130 26 C -0.089 4.089 27 C -0.068 4.068 28 H 0.226 0.774 29 H 0.089 0.911 30 H -0.181 1.181 31 H -0.178 1.178 32 H 0.186 0.814 33 H 0.260 0.740 34 H 0.154 0.846 35 H 0.239 0.761 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.123 0.877 43 H 0.227 0.773 44 H 0.124 0.876 45 H 0.101 0.899 46 H 0.144 0.856 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.455 1.005 3.237 3.419 hybrid contribution -0.219 -0.558 0.157 0.620 sum -0.674 0.447 3.394 3.489 Atomic orbital electron populations 1.86545 1.17594 1.81717 1.49398 1.23933 0.85260 1.09160 0.96109 0.95128 0.80835 0.77642 0.87900 1.19609 1.09465 0.91515 0.96508 1.21632 1.00699 0.94082 0.89394 1.41669 1.54796 1.04074 1.18052 1.18071 1.03252 0.86243 0.94771 1.20058 0.99661 0.87983 1.00151 1.19439 1.04521 0.92363 0.95756 1.18034 0.77214 0.84219 0.84825 1.90800 1.43518 1.85998 1.20148 1.45310 1.66972 1.05067 1.17379 1.19809 0.90777 0.82292 0.95883 1.19813 0.94466 0.94786 0.98579 1.20870 0.97307 0.95288 0.99766 1.21115 0.92688 1.00028 0.99766 1.21179 0.99085 0.95332 0.98395 1.21161 0.96929 0.96021 0.99562 1.20921 0.92375 0.99330 0.99175 1.23461 0.92673 1.04562 0.95911 1.22724 0.92085 0.88093 0.95123 0.90862 1.86549 1.42721 1.31526 1.74025 1.24058 0.96025 0.99849 1.00226 1.20677 1.00408 0.97253 0.94680 1.20161 0.98727 0.90412 0.99643 1.19138 1.01215 0.92802 0.93624 0.77392 0.91140 1.18061 1.17822 0.81379 0.74018 0.84640 0.76076 0.86025 0.85909 0.86095 0.86192 0.86625 0.88931 0.87690 0.77282 0.87588 0.89934 0.85614 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.28 12.86 -35.23 -0.45 -0.74 16 2 C -0.03 0.00 3.05 36.01 0.11 0.11 16 3 Si 0.68 -1.05 30.79 -169.99 -5.23 -6.29 16 4 C -0.16 -0.45 5.60 -102.74 -0.58 -1.03 16 5 C 0.07 0.12 10.43 -16.78 -0.18 -0.06 16 6 N -0.58 -0.80 6.07 -10.68 -0.06 -0.87 16 7 C 0.08 0.28 7.26 -84.00 -0.61 -0.33 16 8 C -0.06 -0.21 9.61 -39.03 -0.37 -0.59 16 9 C -0.12 -0.39 5.87 -104.95 -0.62 -1.01 16 10 C 0.57 2.35 6.18 -12.45 -0.08 2.27 16 11 O -0.53 -3.89 14.55 5.28 0.08 -3.81 16 12 N -0.70 -1.00 3.62 -48.94 -0.18 -1.17 16 13 C 0.20 0.26 0.97 -132.16 -0.13 0.13 16 14 C -0.08 -0.19 5.06 -104.62 -0.53 -0.72 16 15 C -0.11 -0.19 8.43 -39.58 -0.33 -0.52 16 16 C -0.12 -0.19 10.05 -39.58 -0.40 -0.59 16 17 C -0.12 -0.25 10.05 -39.58 -0.40 -0.65 16 18 C -0.12 -0.33 10.05 -39.58 -0.40 -0.73 16 19 C -0.10 -0.34 9.00 -39.59 -0.36 -0.69 16 20 C -0.13 -0.24 6.53 -25.92 -0.17 -0.41 16 21 C 0.08 -0.04 5.28 -25.92 -0.14 -0.18 16 22 H 0.07 -0.14 8.14 -51.93 -0.42 -0.57 16 23 O -0.54 -0.16 13.09 -35.23 -0.46 -0.62 16 24 C -0.16 0.22 7.11 -25.92 -0.18 0.03 16 25 C -0.11 -0.16 9.46 -39.56 -0.37 -0.54 16 26 C -0.07 -0.15 10.03 -39.69 -0.40 -0.55 16 27 C -0.06 -0.23 6.35 -105.04 -0.67 -0.90 16 28 H 0.38 -1.77 8.74 45.56 0.40 -1.37 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H -0.26 -0.27 7.11 56.52 0.40 0.13 16 31 H -0.25 -0.28 7.04 56.52 0.40 0.12 16 32 H 0.17 -0.06 6.30 -52.49 -0.33 -0.40 16 33 H 0.42 -0.65 8.96 -40.82 -0.37 -1.02 16 34 H 0.14 0.48 7.62 -52.49 -0.40 0.08 16 35 H 0.40 -0.30 6.76 -40.82 -0.28 -0.58 16 36 H 0.12 -0.07 6.74 -52.49 -0.35 -0.42 16 37 H 0.12 -0.04 8.06 -52.49 -0.42 -0.46 16 38 H 0.12 0.03 8.06 -52.49 -0.42 -0.39 16 39 H 0.12 0.15 8.06 -52.48 -0.42 -0.27 16 40 H 0.12 0.38 6.53 -52.49 -0.34 0.03 16 41 H 0.09 0.47 6.67 -51.93 -0.35 0.13 16 42 H 0.10 0.06 6.67 -51.93 -0.35 -0.28 16 43 H 0.38 -1.46 9.12 45.56 0.42 -1.04 16 44 H 0.11 -0.24 7.29 -51.93 -0.38 -0.62 16 45 H 0.08 -0.18 8.13 -51.93 -0.42 -0.61 16 46 H 0.13 -0.17 6.37 -52.48 -0.33 -0.50 16 47 H 0.13 0.04 8.06 -52.48 -0.42 -0.38 16 LS Contribution 385.71 15.07 5.81 5.81 Total: 0.00 -11.42 385.71 -12.10 -23.52 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: -4.81 Total: -8.91 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -6.79 Total: -6.93 kcal Atomic # 7 Polarization: -1.80 SS G_CDS: -0.24 Total: -2.04 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.84 Total: -5.16 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: -5.23 Total: -6.29 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -11.42 -12.10 -23.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_12335838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.340 kcal (2) G-P(sol) polarization free energy of solvation -11.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds