Wall clock time and date at job start Sat Mar 6 2021 23:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86301 * 109.47340 * 2 1 4 4 C 1.50703 * 109.47239 * 239.99845 * 2 1 3 5 5 C 1.34449 * 126.48297 * 104.97061 * 4 2 1 6 6 N 1.36565 * 109.98855 * 180.02562 * 5 4 2 7 7 C 1.37835 * 109.85558 * 0.26664 * 6 5 4 8 8 C 1.38647 * 133.37647 * 179.73492 * 7 6 5 9 9 C 1.39320 * 119.66297 * 180.02562 * 8 7 6 10 10 C 1.47577 * 119.83286 * 179.97438 * 9 8 7 11 11 O 1.21597 * 119.99714 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00102 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99758 * 174.79028 * 12 10 9 14 14 C 1.50704 * 112.84776 * 76.03583 * 13 12 10 15 15 C 1.38233 * 119.99990 * 184.85836 * 14 13 12 16 16 C 1.38242 * 119.99948 * 179.81104 * 15 14 13 17 17 C 1.38236 * 119.99827 * 0.41793 * 16 15 14 18 18 C 1.38237 * 119.99709 * 359.81363 * 17 16 15 19 19 C 1.38230 * 120.00298 * 359.97438 * 18 17 16 20 20 C 1.53777 * 113.61785 * 304.83750 * 13 12 10 21 21 C 1.53774 * 87.08070 * 270.88259 * 20 13 12 22 22 H 1.09005 * 113.61280 * 219.93252 * 21 20 13 23 23 O 1.42903 * 113.61450 * 89.11731 * 21 20 13 24 24 C 1.53781 * 87.08363 * 334.56574 * 21 20 13 25 25 C 1.40209 * 120.33718 * 0.02562 * 9 8 7 26 26 C 1.36230 * 120.37468 * 359.53259 * 25 9 8 27 27 C 1.39873 * 119.96208 * 0.69995 * 26 25 9 28 28 H 0.96704 * 114.00202 * 300.00032 * 1 2 3 29 29 H 1.08998 * 109.47168 * 120.00227 * 2 1 3 30 30 H 1.48494 * 110.00039 * 178.68422 * 3 2 1 31 31 H 1.48501 * 109.99492 * 300.00178 * 3 2 1 32 32 H 1.07999 * 125.00556 * 0.02562 * 5 4 2 33 33 H 0.96996 * 125.07456 * 180.02562 * 6 5 4 34 34 H 1.07995 * 120.16978 * 0.02634 * 8 7 6 35 35 H 0.96998 * 120.00259 * 354.80059 * 12 10 9 36 36 H 1.07998 * 120.00148 * 359.97438 * 15 14 13 37 37 H 1.07997 * 119.99874 * 180.21097 * 16 15 14 38 38 H 1.08001 * 120.00046 * 179.79652 * 17 16 15 39 39 H 1.08005 * 119.99575 * 179.97438 * 18 17 16 40 40 H 1.08000 * 119.99662 * 179.97438 * 19 18 17 41 41 H 1.08996 * 113.61528 * 25.43735 * 20 13 12 42 42 H 1.09004 * 113.61664 * 156.24867 * 20 13 12 43 43 H 0.96703 * 113.99603 * 179.97438 * 23 21 20 44 44 H 1.08994 * 113.61483 * 270.88572 * 24 21 20 45 45 H 1.08997 * 113.61384 * 139.97627 * 24 21 20 46 46 H 1.08004 * 119.80791 * 180.02562 * 25 9 8 47 47 H 1.08005 * 120.01946 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4611 -0.1364 -2.3247 6 7 2.8026 -1.0947 -3.2357 7 6 2.4886 -2.3428 -2.7423 8 6 2.6183 -3.6271 -3.2483 9 6 2.1958 -4.7143 -2.4864 10 6 2.3316 -6.0829 -3.0216 11 8 2.8108 -6.2593 -4.1252 12 7 1.9245 -7.1371 -2.2873 13 6 1.9529 -8.4846 -2.8617 14 6 3.3420 -9.0659 -2.9219 15 6 3.5535 -10.2894 -3.5293 16 6 4.8284 -10.8208 -3.5880 17 6 5.8903 -10.1326 -3.0315 18 6 5.6780 -8.9113 -2.4199 19 6 4.4039 -8.3779 -2.3651 20 6 1.1759 -8.6075 -4.1830 21 6 -0.0622 -8.9383 -3.3330 22 1 -0.6856 -9.7253 -3.7574 23 8 -0.8122 -7.7866 -2.9417 24 6 0.9108 -9.4365 -2.2513 25 6 1.6414 -4.5148 -1.2142 26 6 1.5186 -3.2569 -0.7058 27 6 1.9336 -2.1548 -1.4606 28 1 -0.3934 0.4417 0.7651 29 1 1.7923 -0.5139 0.8899 30 1 3.5345 1.7702 0.0320 31 1 1.5614 2.4678 -1.2085 32 1 2.5966 0.9261 -2.4629 33 1 3.2030 -0.9226 -4.1023 34 1 3.0447 -3.7839 -4.2281 35 1 1.6126 -7.0038 -1.3786 36 1 2.7232 -10.8290 -3.9604 37 1 4.9941 -11.7752 -4.0656 38 1 6.8858 -10.5493 -3.0745 39 1 6.5076 -8.3738 -1.9848 40 1 4.2380 -7.4239 -1.8868 41 1 1.0922 -7.6682 -4.7294 42 1 1.5097 -9.4339 -4.8106 43 1 -1.5924 -7.9883 -2.4072 44 1 1.1711 -10.4903 -2.3501 45 1 0.6130 -9.1662 -1.2382 46 1 1.3170 -5.3638 -0.6307 47 1 1.0902 -3.1098 0.2747 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_12335838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:48:22 Heat of formation + Delta-G solvation = 17.152798 kcal Electronic energy + Delta-G solvation = -32609.405878 eV Core-core repulsion = 28304.492302 eV Total energy + Delta-G solvation = -4304.913575 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.61953 -42.09156 -40.03176 -39.23686 -37.82630 -37.47786 -36.23512 -34.17347 -33.43922 -31.85039 -31.66089 -30.86414 -30.55735 -26.98657 -26.56267 -26.05732 -24.57577 -23.72531 -23.48670 -22.43955 -21.56919 -20.68258 -20.28963 -19.35480 -18.66541 -18.46988 -18.24240 -17.84313 -17.35885 -16.96910 -16.44270 -16.18831 -16.03041 -15.67141 -15.52482 -15.47687 -15.19951 -15.08905 -15.00824 -14.84069 -14.73934 -14.50814 -14.31575 -14.01887 -13.83625 -13.60086 -13.29841 -13.20477 -12.99196 -12.72443 -12.59326 -12.30435 -12.24519 -12.15603 -11.95729 -11.93499 -11.50326 -10.96222 -10.94742 -10.87859 -10.15455 -10.10693 -9.85834 -9.60528 -9.47536 -8.92397 -4.91831 -0.41306 0.29629 0.38034 0.45929 1.22057 1.37244 1.71195 1.77324 1.88793 2.01351 2.12758 2.76456 2.80192 3.13669 3.42607 3.48874 3.56598 3.62473 3.64314 3.67841 3.70581 3.85540 4.01875 4.03531 4.05686 4.09362 4.20089 4.22875 4.28752 4.36032 4.42881 4.49754 4.59102 4.61756 4.66284 4.72336 4.83083 4.86017 4.89335 4.97572 4.98942 5.04181 5.12080 5.14832 5.32192 5.36759 5.41195 5.49895 5.53410 5.58649 5.73338 5.87305 6.06535 6.33965 6.46554 6.92775 7.03279 7.16563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.045 4.045 3 Si 0.783 3.217 4 C -0.187 4.187 5 C 0.065 3.935 6 N -0.580 5.580 7 C 0.068 3.932 8 C -0.072 4.072 9 C -0.128 4.128 10 C 0.567 3.433 11 O -0.569 6.569 12 N -0.681 5.681 13 C 0.190 3.810 14 C -0.085 4.085 15 C -0.119 4.119 16 C -0.124 4.124 17 C -0.133 4.133 18 C -0.134 4.134 19 C -0.121 4.121 20 C -0.139 4.139 21 C 0.087 3.913 22 H 0.094 0.906 23 O -0.565 6.565 24 C -0.146 4.146 25 C -0.105 4.105 26 C -0.075 4.075 27 C -0.083 4.083 28 H 0.400 0.600 29 H 0.085 0.915 30 H -0.292 1.292 31 H -0.290 1.290 32 H 0.186 0.814 33 H 0.432 0.568 34 H 0.125 0.875 35 H 0.413 0.587 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.053 0.947 42 H 0.114 0.886 43 H 0.398 0.602 44 H 0.122 0.878 45 H 0.097 0.903 46 H 0.155 0.845 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 -0.388 7.102 7.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.377 6.377 2 C -0.155 4.155 3 Si 0.687 3.313 4 C -0.194 4.194 5 C -0.064 4.064 6 N -0.184 5.184 7 C -0.039 4.039 8 C -0.094 4.094 9 C -0.133 4.133 10 C 0.356 3.644 11 O -0.450 6.450 12 N -0.333 5.333 13 C 0.103 3.897 14 C -0.086 4.086 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.139 4.139 20 C -0.177 4.177 21 C 0.027 3.973 22 H 0.112 0.888 23 O -0.373 6.373 24 C -0.184 4.184 25 C -0.124 4.124 26 C -0.093 4.093 27 C -0.088 4.088 28 H 0.251 0.749 29 H 0.103 0.897 30 H -0.219 1.219 31 H -0.217 1.217 32 H 0.203 0.797 33 H 0.272 0.728 34 H 0.143 0.857 35 H 0.252 0.748 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.072 0.928 42 H 0.132 0.868 43 H 0.248 0.752 44 H 0.140 0.860 45 H 0.115 0.885 46 H 0.172 0.828 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.618 0.100 4.914 5.175 hybrid contribution 0.139 -0.262 -0.391 0.491 sum -1.479 -0.161 4.523 4.761 Atomic orbital electron populations 1.86487 1.17735 1.82385 1.51093 1.24194 0.85331 1.10459 0.95501 0.94036 0.77186 0.74552 0.85498 1.20102 1.09959 0.91447 0.97892 1.22001 1.00261 0.94833 0.89273 1.41725 1.54527 1.03520 1.18585 1.18181 1.03831 0.86585 0.95300 1.20085 1.00517 0.88684 1.00105 1.19554 1.05164 0.91866 0.96684 1.18205 0.76764 0.85006 0.84429 1.90769 1.45629 1.86585 1.21979 1.45209 1.65687 1.04824 1.17534 1.20029 0.90890 0.82504 0.96319 1.20039 0.94822 0.95224 0.98501 1.21169 0.98187 0.95064 0.99341 1.21454 0.92567 1.00791 0.99349 1.21448 1.00185 0.95168 0.98307 1.21362 0.97051 0.96706 1.00126 1.21011 0.93190 0.99430 1.00303 1.23540 0.94998 1.02994 0.96180 1.22692 0.91716 0.88124 0.94726 0.88802 1.86508 1.43808 1.32385 1.74609 1.24024 0.93914 0.99867 1.00607 1.20926 0.99399 0.98172 0.93906 1.20446 0.98375 0.90139 1.00339 1.19544 1.01499 0.93891 0.93903 0.74902 0.89720 1.21886 1.21698 0.79712 0.72802 0.85684 0.74797 0.83795 0.83814 0.84566 0.85554 0.87459 0.92838 0.86778 0.75211 0.86011 0.88451 0.82777 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -0.18 12.86 -148.98 -1.92 -2.09 16 2 C -0.05 0.01 3.05 71.24 0.22 0.23 16 3 Si 0.78 -2.75 30.79 68.60 2.11 -0.64 16 4 C -0.19 -1.13 5.60 -18.64 -0.10 -1.23 16 5 C 0.07 0.28 10.43 83.09 0.87 1.14 16 6 N -0.58 -2.55 6.07 -187.71 -1.14 -3.68 16 7 C 0.07 0.60 7.26 38.96 0.28 0.88 16 8 C -0.07 -0.75 9.61 22.63 0.22 -0.53 16 9 C -0.13 -1.11 5.87 -20.07 -0.12 -1.23 16 10 C 0.57 5.96 6.18 86.71 0.54 6.49 16 11 O -0.57 -10.31 14.55 -4.02 -0.06 -10.37 16 12 N -0.68 -2.56 3.62 -427.00 -1.54 -4.11 16 13 C 0.19 0.56 0.97 3.38 0.00 0.56 16 14 C -0.08 -0.49 5.06 -19.87 -0.10 -0.59 16 15 C -0.12 -0.35 8.43 22.27 0.19 -0.16 16 16 C -0.12 -0.36 10.05 22.27 0.22 -0.13 16 17 C -0.13 -0.60 10.05 22.27 0.22 -0.37 16 18 C -0.13 -0.92 10.05 22.27 0.22 -0.70 16 19 C -0.12 -1.01 9.00 22.27 0.20 -0.81 16 20 C -0.14 -0.63 6.53 31.12 0.20 -0.43 16 21 C 0.09 -0.16 5.28 31.12 0.16 0.00 16 22 H 0.09 -0.55 8.14 -2.38 -0.02 -0.57 16 23 O -0.56 -0.02 13.09 -148.98 -1.95 -1.96 16 24 C -0.15 0.61 7.11 31.12 0.22 0.84 16 25 C -0.10 -0.35 9.46 22.28 0.21 -0.14 16 26 C -0.07 -0.33 10.03 22.20 0.22 -0.11 16 27 C -0.08 -0.69 6.35 -20.14 -0.13 -0.82 16 28 H 0.40 -4.25 8.74 -74.05 -0.65 -4.89 16 29 H 0.08 -0.30 7.96 -2.39 -0.02 -0.31 16 30 H -0.29 -0.67 7.11 99.48 0.71 0.03 16 31 H -0.29 -0.68 7.04 99.48 0.70 0.02 16 32 H 0.19 -0.04 6.30 -2.91 -0.02 -0.06 16 33 H 0.43 -0.55 8.96 -92.71 -0.83 -1.38 16 34 H 0.13 1.40 7.62 -2.91 -0.02 1.38 16 35 H 0.41 -0.65 6.76 -92.71 -0.63 -1.27 16 36 H 0.14 -0.35 6.74 -2.91 -0.02 -0.37 16 37 H 0.14 -0.29 8.06 -2.91 -0.02 -0.31 16 38 H 0.14 0.06 8.06 -2.91 -0.02 0.04 16 39 H 0.13 0.52 8.06 -2.91 -0.02 0.50 16 40 H 0.11 0.95 6.53 -2.91 -0.02 0.93 16 41 H 0.05 0.69 6.67 -2.39 -0.02 0.67 16 42 H 0.11 0.19 6.67 -2.38 -0.02 0.17 16 43 H 0.40 -3.54 9.12 -74.06 -0.68 -4.22 16 44 H 0.12 -0.85 7.29 -2.39 -0.02 -0.87 16 45 H 0.10 -0.66 8.13 -2.39 -0.02 -0.68 16 46 H 0.15 -0.53 6.37 -2.91 -0.02 -0.55 16 47 H 0.15 -0.03 8.06 -2.91 -0.02 -0.06 16 Total: 0.00 -29.36 385.71 -2.41 -31.77 By element: Atomic # 1 Polarization: -10.14 SS G_CDS: -1.67 Total: -11.81 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 3.75 Total: 2.89 kcal Atomic # 7 Polarization: -5.11 SS G_CDS: -2.68 Total: -7.79 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -3.92 Total: -14.42 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.11 Total: -0.64 kcal Total: -29.36 -2.41 -31.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_12335838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.921 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds