Wall clock time and date at job start Sat Mar 6 2021 23:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86293 * 109.47563 * 2 1 4 4 C 1.50709 * 109.46538 * 119.99705 * 2 1 3 5 5 C 1.37939 * 119.92003 * 65.32382 * 4 2 1 6 6 C 1.39607 * 119.86989 * 180.27012 * 5 4 2 7 7 C 1.47842 * 120.13779 * 179.69414 * 6 5 4 8 8 O 1.21552 * 120.00225 * 359.73538 * 7 6 5 9 9 N 1.34776 * 119.99817 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00006 * 174.50083 * 9 7 6 11 11 C 1.50697 * 112.85477 * 293.06882 * 10 9 7 12 12 C 1.38234 * 120.00025 * 164.71645 * 11 10 9 13 13 C 1.38236 * 119.99715 * 179.78533 * 12 11 10 14 14 C 1.38237 * 119.99945 * 0.46676 * 13 12 11 15 15 C 1.38240 * 119.99934 * 359.77004 * 14 13 12 16 16 C 1.38232 * 119.99948 * 0.02562 * 15 14 13 17 17 C 1.53782 * 113.61239 * 161.75751 * 10 9 7 18 18 C 1.53783 * 87.08538 * 270.88954 * 17 10 9 19 19 H 1.09001 * 113.69149 * 220.01345 * 18 17 10 20 20 O 1.42895 * 113.61612 * 89.11331 * 18 17 10 21 21 C 1.53789 * 113.60982 * 64.26491 * 10 9 7 22 22 C 1.39545 * 119.71700 * 359.42760 * 6 5 4 23 23 C 1.38074 * 119.84590 * 0.27267 * 22 6 5 24 24 Br 1.89094 * 119.93743 * 179.97438 * 23 22 6 25 25 C 1.38360 * 119.91825 * 244.99596 * 4 2 1 26 26 H 0.96699 * 113.99788 * 300.00591 * 1 2 3 27 27 H 1.08997 * 109.47142 * 239.99211 * 2 1 3 28 28 H 1.48505 * 109.99557 * 299.99602 * 3 2 1 29 29 H 1.48497 * 110.00121 * 61.31316 * 3 2 1 30 30 H 1.07997 * 120.07117 * 359.97438 * 5 4 2 31 31 H 0.96999 * 120.00524 * 354.50810 * 9 7 6 32 32 H 1.07993 * 119.99865 * 0.02562 * 12 11 10 33 33 H 1.08001 * 120.00116 * 180.25310 * 13 12 11 34 34 H 1.08001 * 119.99942 * 179.78132 * 14 13 12 35 35 H 1.08000 * 119.99593 * 179.97438 * 15 14 13 36 36 H 1.07998 * 119.99619 * 179.97438 * 16 15 14 37 37 H 1.08997 * 113.61477 * 25.43686 * 17 10 9 38 38 H 1.09002 * 113.61385 * 156.33545 * 17 10 9 39 39 H 0.96704 * 113.99762 * 82.50158 * 20 18 17 40 40 H 1.08992 * 113.61211 * 203.65921 * 21 10 9 41 41 H 1.08997 * 113.61506 * 334.56625 * 21 10 9 42 42 H 1.07997 * 120.06994 * 180.29378 * 22 6 5 43 43 H 1.07997 * 119.86363 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.6899 -2.0587 1.3933 6 6 2.1507 -2.7146 2.5364 7 6 1.8895 -4.1581 2.7200 8 8 1.2683 -4.7754 1.8771 9 7 2.3352 -4.7883 3.8249 10 6 1.9745 -6.1877 4.0657 11 6 0.5036 -6.3751 4.3344 12 6 -0.0558 -7.6374 4.2681 13 6 -1.4042 -7.8098 4.5190 14 6 -2.1951 -6.7186 4.8266 15 6 -1.6366 -5.4555 4.8881 16 6 -0.2873 -5.2837 4.6414 17 6 2.8838 -6.8911 5.0872 18 6 3.7874 -7.2723 3.9026 19 1 4.1880 -8.2841 3.9652 20 8 4.7888 -6.2960 3.6092 21 6 2.5373 -7.1586 3.0142 22 6 2.8637 -2.0030 3.5021 23 6 3.1040 -0.6550 3.3244 24 35 4.0692 0.3119 4.6317 25 6 2.6391 -0.0100 2.1912 26 1 -0.3933 0.4418 0.7650 27 1 1.7923 -0.5139 -0.8899 28 1 1.5617 2.4677 -1.2086 29 1 1.5880 2.4585 1.2241 30 1 1.1414 -2.6051 0.6403 31 1 2.8948 -4.3154 4.4606 32 1 0.5614 -8.4894 4.0242 33 1 -1.8406 -8.7966 4.4712 34 1 -3.2493 -6.8528 5.0191 35 1 -2.2546 -4.6030 5.1280 36 1 0.1489 -4.2969 4.6890 37 1 3.3556 -6.2089 5.7944 38 1 2.4150 -7.7474 5.5721 39 1 5.5775 -6.3624 4.1648 40 1 1.9739 -8.0880 2.9324 41 1 2.7293 -6.6923 2.0479 42 1 3.2269 -2.5057 4.3863 43 1 2.8295 1.0445 2.0566 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_12335870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:48:43 Heat of formation + Delta-G solvation = -10.673533 kcal Electronic energy + Delta-G solvation = -29956.690658 eV Core-core repulsion = 25788.168251 eV Total energy + Delta-G solvation = -4168.522408 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.046 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.28536 -41.02899 -39.58109 -39.18109 -37.82996 -36.25203 -34.48570 -33.64388 -32.76940 -31.71639 -31.67833 -30.47804 -27.11685 -26.99412 -26.37173 -24.83320 -23.52113 -22.84369 -22.48864 -21.54896 -20.31180 -19.28243 -18.64607 -18.14645 -17.72244 -17.56619 -17.25435 -16.64009 -16.45185 -16.38091 -15.97156 -15.76363 -15.60266 -15.35906 -15.23144 -14.98935 -14.65543 -14.39233 -14.29614 -14.18865 -13.97990 -13.59289 -13.34508 -13.20394 -13.05650 -12.94899 -12.35977 -12.29676 -12.25129 -11.97614 -11.95373 -11.83565 -11.55868 -11.39854 -11.06517 -10.96755 -10.71089 -10.36112 -10.09007 -9.92928 -9.87247 -9.61010 -4.98567 -0.52273 -0.18190 0.36811 0.41141 0.44516 1.19065 1.52701 1.54754 1.86605 1.93806 2.46073 2.75398 3.12622 3.22935 3.30708 3.42417 3.47283 3.60287 3.67860 3.76137 3.82066 3.87069 3.93057 4.02774 4.07109 4.18488 4.21125 4.29229 4.36981 4.52749 4.57186 4.59977 4.68227 4.73722 4.81812 4.84777 4.90673 4.96426 4.99349 5.02062 5.07068 5.11606 5.33529 5.37895 5.51638 5.57710 5.69650 6.05132 6.38190 6.39949 6.92486 7.08481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.086 4.086 3 Si 0.765 3.235 4 C -0.112 4.112 5 C -0.030 4.030 6 C -0.135 4.135 7 C 0.563 3.437 8 O -0.560 6.560 9 N -0.682 5.682 10 C 0.189 3.811 11 C -0.082 4.082 12 C -0.121 4.121 13 C -0.124 4.124 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.123 4.123 17 C -0.147 4.147 18 C 0.088 3.912 19 H 0.094 0.906 20 O -0.564 6.564 21 C -0.140 4.140 22 C -0.044 4.044 23 C -0.097 4.097 24 Br -0.027 7.027 25 C -0.063 4.063 26 H 0.387 0.613 27 H 0.129 0.871 28 H -0.296 1.296 29 H -0.271 1.271 30 H 0.128 0.872 31 H 0.413 0.587 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.398 0.602 40 H 0.115 0.885 41 H 0.054 0.946 42 H 0.158 0.842 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -0.938 5.507 7.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.194 4.194 3 Si 0.668 3.332 4 C -0.114 4.114 5 C -0.050 4.050 6 C -0.139 4.139 7 C 0.351 3.649 8 O -0.439 6.439 9 N -0.334 5.334 10 C 0.102 3.898 11 C -0.083 4.083 12 C -0.139 4.139 13 C -0.142 4.142 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.141 4.141 17 C -0.185 4.185 18 C 0.028 3.972 19 H 0.112 0.888 20 O -0.373 6.373 21 C -0.178 4.178 22 C -0.064 4.064 23 C -0.177 4.177 24 Br 0.059 6.941 25 C -0.082 4.082 26 H 0.237 0.763 27 H 0.146 0.854 28 H -0.223 1.223 29 H -0.196 1.196 30 H 0.146 0.854 31 H 0.252 0.748 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.138 0.862 39 H 0.249 0.751 40 H 0.133 0.867 41 H 0.073 0.927 42 H 0.176 0.824 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.409 -0.318 4.455 6.276 hybrid contribution -1.043 -0.209 0.586 1.215 sum 3.366 -0.527 5.041 6.084 Atomic orbital electron populations 1.86618 1.18171 1.80402 1.50169 1.25338 0.83719 1.12345 0.97982 0.94098 0.90184 0.71472 0.77423 1.20250 0.99867 0.93772 0.97484 1.21242 0.94257 0.93832 0.95635 1.19925 1.03515 0.93249 0.97214 1.18256 0.78446 0.86643 0.81565 1.90799 1.41845 1.67798 1.43436 1.45279 1.52483 1.11805 1.23802 1.20029 0.89900 0.81407 0.98422 1.19956 0.95023 0.93946 0.99361 1.21192 0.95715 0.96793 1.00174 1.21452 0.93947 0.99814 0.99001 1.21451 1.00863 0.92796 1.00031 1.21365 0.95227 0.98178 1.00305 1.21011 0.94281 0.98514 1.00301 1.24012 0.96323 1.01551 0.96579 1.22682 0.87978 0.92515 0.93995 0.88820 1.86484 1.30965 1.56087 1.63726 1.23590 0.96214 0.99951 0.98078 1.21424 0.94321 0.92269 0.98379 1.21722 1.04071 0.95131 0.96768 1.96849 1.72334 1.73382 1.51569 1.21411 0.94560 1.00858 0.91412 0.76318 0.85373 1.22334 1.19648 0.85401 0.74845 0.83987 0.83983 0.84639 0.85414 0.87032 0.88448 0.86241 0.75126 0.86711 0.92671 0.82441 0.82604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.82 12.84 -148.98 -1.91 -3.74 16 2 C -0.09 0.03 2.80 71.24 0.20 0.22 16 3 Si 0.76 -2.07 29.87 68.60 2.05 -0.02 16 4 C -0.11 -0.05 5.34 -19.90 -0.11 -0.16 16 5 C -0.03 -0.14 9.23 22.53 0.21 0.07 16 6 C -0.13 -0.49 5.87 -20.09 -0.12 -0.61 16 7 C 0.56 4.01 6.24 86.79 0.54 4.56 16 8 O -0.56 -8.60 14.83 -3.88 -0.06 -8.66 16 9 N -0.68 -0.78 3.73 -426.75 -1.59 -2.38 16 10 C 0.19 0.20 0.93 3.39 0.00 0.20 16 11 C -0.08 -0.36 4.79 -19.87 -0.10 -0.45 16 12 C -0.12 -0.31 8.82 22.27 0.20 -0.11 16 13 C -0.12 -0.33 10.05 22.27 0.22 -0.10 16 14 C -0.13 -0.52 10.05 22.27 0.22 -0.29 16 15 C -0.13 -0.73 10.05 22.27 0.22 -0.51 16 16 C -0.12 -0.77 8.94 22.27 0.20 -0.57 16 17 C -0.15 0.83 7.13 31.12 0.22 1.05 16 18 C 0.09 -0.34 5.28 31.12 0.16 -0.18 16 19 H 0.09 -0.71 8.14 -2.39 -0.02 -0.72 16 20 O -0.56 1.52 13.09 -148.98 -1.95 -0.43 16 21 C -0.14 -0.32 6.57 31.13 0.20 -0.12 16 22 C -0.04 0.05 9.28 22.55 0.21 0.26 16 23 C -0.10 0.12 6.22 22.28 0.14 0.26 16 24 Br -0.03 0.05 33.69 -20.37 -0.69 -0.63 16 25 C -0.06 0.10 8.40 22.34 0.19 0.29 16 26 H 0.39 -1.05 8.70 -74.06 -0.64 -1.69 16 27 H 0.13 -0.18 7.96 -2.39 -0.02 -0.20 16 28 H -0.30 -1.46 7.11 99.48 0.71 -0.75 16 29 H -0.27 0.05 7.00 99.48 0.70 0.75 16 30 H 0.13 1.06 7.65 -2.91 -0.02 1.04 16 31 H 0.41 -1.69 6.72 -92.71 -0.62 -2.31 16 32 H 0.14 -0.32 6.42 -2.91 -0.02 -0.34 16 33 H 0.14 -0.27 8.06 -2.91 -0.02 -0.30 16 34 H 0.14 0.01 8.06 -2.91 -0.02 -0.02 16 35 H 0.13 0.33 8.06 -2.91 -0.02 0.31 16 36 H 0.11 0.62 6.77 -2.91 -0.02 0.60 16 37 H 0.10 -0.81 8.09 -2.39 -0.02 -0.83 16 38 H 0.12 -0.92 7.86 -2.39 -0.02 -0.94 16 39 H 0.40 -4.54 9.12 -74.05 -0.68 -5.21 16 40 H 0.11 -0.05 6.12 -2.39 -0.01 -0.06 16 41 H 0.05 0.55 7.10 -2.39 -0.02 0.54 16 42 H 0.16 -0.96 6.42 -2.91 -0.02 -0.98 16 43 H 0.16 -0.76 4.82 -2.91 -0.01 -0.78 16 Total: 0.00 -21.83 374.22 -2.13 -23.96 By element: Atomic # 1 Polarization: -11.10 SS G_CDS: -0.81 Total: -11.91 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 2.83 Total: 3.81 kcal Atomic # 7 Polarization: -0.78 SS G_CDS: -1.59 Total: -2.38 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -3.92 Total: -12.83 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: 2.05 Total: -0.02 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.63 kcal Total: -21.83 -2.13 -23.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_12335870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.291 kcal (2) G-P(sol) polarization free energy of solvation -21.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds