Wall clock time and date at job start Sat Mar 6 2021 23:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86308 * 109.46808 * 2 1 4 4 C 1.50693 * 109.47389 * 240.00199 * 2 1 3 5 5 C 1.38633 * 119.94210 * 74.97441 * 4 2 1 6 6 F 1.35098 * 119.87872 * 359.97438 * 5 4 2 7 7 C 1.38673 * 120.24044 * 180.02562 * 5 4 2 8 8 C 1.37819 * 120.11880 * 359.73883 * 7 5 4 9 9 C 1.39664 * 119.87676 * 0.53890 * 8 7 5 10 10 C 1.47730 * 120.11875 * 179.74439 * 9 8 7 11 11 O 1.21564 * 120.00087 * 179.71489 * 10 9 8 12 12 N 1.34777 * 119.99675 * 359.44425 * 10 9 8 13 13 C 1.46501 * 120.00192 * 175.05414 * 12 10 9 14 14 C 1.50704 * 112.84844 * 293.07730 * 13 12 10 15 15 C 1.38233 * 119.99995 * 164.71652 * 14 13 12 16 16 C 1.38235 * 119.99725 * 179.76726 * 15 14 13 17 17 C 1.38235 * 120.00050 * 0.49969 * 16 15 14 18 18 C 1.38237 * 120.00124 * 359.74981 * 17 16 15 19 19 C 1.38233 * 119.99609 * 0.02562 * 18 17 16 20 20 C 1.53779 * 113.61684 * 161.76665 * 13 12 10 21 21 C 1.53785 * 87.07987 * 270.88425 * 20 13 12 22 22 H 1.08998 * 113.61191 * 220.01564 * 21 20 13 23 23 O 1.42903 * 113.68959 * 89.12771 * 21 20 13 24 24 C 1.53778 * 113.61205 * 64.26547 * 13 12 10 25 25 C 1.37860 * 119.94169 * 255.00019 * 4 2 1 26 26 H 0.96691 * 114.00275 * 59.99919 * 1 2 3 27 27 H 1.09000 * 109.47176 * 119.99184 * 2 1 3 28 28 H 1.48506 * 110.00026 * 60.00141 * 3 2 1 29 29 H 1.48500 * 110.00017 * 181.31797 * 3 2 1 30 30 H 1.08004 * 119.94298 * 180.02562 * 7 5 4 31 31 H 1.08003 * 120.05886 * 180.25088 * 8 7 5 32 32 H 0.97003 * 119.99989 * 355.05840 * 12 10 9 33 33 H 1.08000 * 119.99811 * 359.97438 * 15 14 13 34 34 H 1.07996 * 119.99704 * 180.23074 * 16 15 14 35 35 H 1.08003 * 120.00146 * 179.72737 * 17 16 15 36 36 H 1.07998 * 119.99936 * 179.97438 * 18 17 16 37 37 H 1.08007 * 119.99499 * 179.97438 * 19 18 17 38 38 H 1.09001 * 113.61051 * 25.43371 * 20 13 12 39 39 H 1.09000 * 113.61376 * 156.33392 * 20 13 12 40 40 H 0.96696 * 113.99828 * 82.45850 * 23 21 20 41 41 H 1.09005 * 113.61568 * 203.66277 * 24 13 12 42 42 H 1.09000 * 113.62024 * 334.48710 * 24 13 12 43 43 H 1.07999 * 120.06033 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.8684 -0.0836 -2.4654 6 9 1.3561 1.1627 -2.5623 7 6 2.3285 -0.7317 -3.6017 8 6 2.8561 -2.0015 -3.5079 9 6 2.9165 -2.6398 -2.2671 10 6 3.4758 -4.0030 -2.1612 11 8 3.5321 -4.5546 -1.0794 12 7 3.9185 -4.6373 -3.2649 13 6 4.5716 -5.9433 -3.1469 14 6 5.8992 -5.8717 -2.4372 15 6 6.4930 -7.0267 -1.9638 16 6 7.7130 -6.9615 -1.3170 17 6 8.3342 -5.7401 -1.1346 18 6 7.7379 -4.5845 -1.6036 19 6 6.5201 -4.6503 -2.2544 20 6 4.6185 -6.7303 -4.4673 21 6 3.2529 -7.3181 -4.0741 22 1 3.1491 -8.3771 -4.3104 23 8 2.1419 -6.5383 -4.5211 24 6 3.6461 -7.0488 -2.6120 25 6 2.4523 -1.9825 -1.1260 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5137 0.8901 28 1 1.5614 2.4680 1.2086 29 1 3.5345 1.7705 -0.0321 30 1 2.2775 -0.2388 -4.5614 31 1 3.2178 -2.5038 -4.3929 32 1 3.8047 -4.2290 -4.1375 33 1 6.0054 -7.9804 -2.1021 34 1 8.1787 -7.8643 -0.9504 35 1 9.2853 -5.6887 -0.6255 36 1 8.2230 -3.6302 -1.4607 37 1 6.0540 -3.7473 -2.6204 38 1 4.5825 -6.0975 -5.3541 39 1 5.4177 -7.4705 -4.5063 40 1 1.8900 -6.7032 -5.4399 41 1 4.1794 -7.8762 -2.1438 42 1 2.8260 -6.6735 -1.9999 43 1 2.5001 -2.4702 -0.1636 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_12496548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:49:02 Heat of formation + Delta-G solvation = -59.942836 kcal Electronic energy + Delta-G solvation = -30331.299689 eV Core-core repulsion = 26031.004831 eV Total energy + Delta-G solvation = -4300.294858 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.126 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.37124 -42.24704 -40.75837 -39.45173 -39.11111 -37.70926 -36.24530 -34.39803 -32.81126 -32.04181 -31.67941 -31.52377 -27.09788 -26.97753 -26.19908 -24.67775 -23.54854 -23.50660 -22.46848 -21.53611 -20.32855 -19.30815 -18.74229 -18.53736 -18.11780 -17.85238 -17.61747 -17.02535 -16.84392 -16.46724 -16.28876 -15.97226 -15.70997 -15.55523 -15.43431 -15.23623 -15.08358 -14.69443 -14.49473 -14.38330 -14.24663 -14.06038 -13.94174 -13.63059 -13.40107 -13.23078 -12.95562 -12.92587 -12.50764 -12.34202 -12.25214 -12.01390 -11.94910 -11.51266 -11.05325 -10.95882 -10.71094 -10.19680 -10.13590 -9.87617 -9.85754 -9.60630 -4.94795 -0.53160 -0.02653 0.36882 0.44517 1.12692 1.48598 1.61361 1.82555 1.94115 2.53847 2.75428 2.90235 3.13075 3.23544 3.43520 3.49858 3.52122 3.57418 3.61335 3.70032 3.82698 3.92460 4.01904 4.06086 4.07369 4.20828 4.25260 4.36884 4.56868 4.59681 4.59972 4.68271 4.71659 4.82290 4.83244 4.87477 4.96055 4.96361 4.99179 5.02516 5.06969 5.11614 5.37102 5.51543 5.57228 5.57695 5.70758 6.05154 6.43755 6.55532 6.93265 7.13498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.075 4.075 3 Si 0.749 3.251 4 C -0.164 4.164 5 C 0.121 3.879 6 F -0.099 7.099 7 C -0.139 4.139 8 C -0.043 4.043 9 C -0.154 4.154 10 C 0.562 3.438 11 O -0.567 6.567 12 N -0.681 5.681 13 C 0.190 3.810 14 C -0.081 4.081 15 C -0.122 4.122 16 C -0.125 4.125 17 C -0.134 4.134 18 C -0.133 4.133 19 C -0.122 4.122 20 C -0.145 4.145 21 C 0.088 3.912 22 H 0.093 0.907 23 O -0.564 6.564 24 C -0.143 4.143 25 C -0.034 4.034 26 H 0.393 0.607 27 H 0.109 0.891 28 H -0.285 1.285 29 H -0.285 1.285 30 H 0.184 0.816 31 H 0.172 0.828 32 H 0.416 0.584 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.399 0.601 41 H 0.113 0.887 42 H 0.052 0.948 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.503 -0.997 -10.518 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.185 4.185 3 Si 0.654 3.346 4 C -0.166 4.166 5 C 0.102 3.898 6 F -0.077 7.077 7 C -0.157 4.157 8 C -0.061 4.061 9 C -0.158 4.158 10 C 0.350 3.650 11 O -0.446 6.446 12 N -0.332 5.332 13 C 0.103 3.897 14 C -0.082 4.082 15 C -0.140 4.140 16 C -0.143 4.143 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.141 4.141 20 C -0.182 4.182 21 C 0.028 3.972 22 H 0.110 0.890 23 O -0.372 6.372 24 C -0.181 4.181 25 C -0.053 4.053 26 H 0.242 0.758 27 H 0.127 0.873 28 H -0.212 1.212 29 H -0.212 1.212 30 H 0.201 0.799 31 H 0.190 0.810 32 H 0.255 0.745 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.136 0.864 40 H 0.249 0.751 41 H 0.131 0.869 42 H 0.071 0.929 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.118 -0.832 -8.217 8.527 hybrid contribution -0.043 -0.349 0.060 0.357 sum 2.075 -1.181 -8.158 8.500 Atomic orbital electron populations 1.86520 1.16784 1.81997 1.50382 1.25089 0.85499 1.11199 0.96713 0.93886 0.78187 0.76692 0.85879 1.20269 1.04639 0.96299 0.95361 1.17851 0.97323 0.80563 0.94099 1.91190 1.84154 1.37604 1.94758 1.21465 0.99809 0.95528 0.98934 1.21529 0.94285 0.93803 0.96506 1.20028 1.05440 0.94837 0.95449 1.18321 0.77075 0.85543 0.84076 1.90793 1.56744 1.67999 1.29111 1.45233 1.59152 1.19434 1.09413 1.20009 0.88510 0.83189 0.98007 1.19964 0.95522 0.93794 0.98968 1.21193 0.95859 0.98385 0.98557 1.21443 0.95512 0.98581 0.98773 1.21447 1.00855 0.92808 1.00103 1.21374 0.95877 0.99259 0.98590 1.21041 0.95657 0.97575 0.99785 1.23993 0.99268 0.99759 0.95224 1.22671 0.85533 0.95061 0.93913 0.88972 1.86486 1.49400 1.66419 1.34935 1.23594 0.99028 0.98587 0.96852 1.20962 0.93165 0.92270 0.98926 0.75764 0.87308 1.21244 1.21178 0.79890 0.81041 0.74517 0.84109 0.84096 0.84709 0.85368 0.86681 0.88112 0.86351 0.75087 0.86902 0.92899 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.36 12.88 -148.98 -1.92 -4.28 16 2 C -0.08 -0.28 2.80 71.23 0.20 -0.08 16 3 Si 0.75 1.88 29.57 68.60 2.03 3.91 16 4 C -0.16 -0.44 4.78 -19.86 -0.09 -0.54 16 5 C 0.12 -0.24 6.62 22.47 0.15 -0.10 16 6 F -0.10 0.42 13.46 44.97 0.61 1.03 16 7 C -0.14 0.88 10.01 22.27 0.22 1.10 16 8 C -0.04 0.22 9.53 22.52 0.21 0.44 16 9 C -0.15 -0.43 5.87 -20.09 -0.12 -0.55 16 10 C 0.56 3.70 6.24 86.75 0.54 4.24 16 11 O -0.57 -8.88 14.82 -3.92 -0.06 -8.94 16 12 N -0.68 0.12 3.74 -426.87 -1.59 -1.47 16 13 C 0.19 0.07 0.93 3.38 0.00 0.07 16 14 C -0.08 -0.32 4.79 -19.87 -0.10 -0.41 16 15 C -0.12 -0.30 8.82 22.27 0.20 -0.10 16 16 C -0.13 -0.32 10.05 22.27 0.22 -0.10 16 17 C -0.13 -0.50 10.05 22.27 0.22 -0.27 16 18 C -0.13 -0.67 10.05 22.27 0.22 -0.45 16 19 C -0.12 -0.68 8.93 22.27 0.20 -0.48 16 20 C -0.14 0.95 7.13 31.12 0.22 1.17 16 21 C 0.09 -0.38 5.27 31.12 0.16 -0.21 16 22 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 23 O -0.56 1.89 13.09 -148.98 -1.95 -0.06 16 24 C -0.14 -0.33 6.57 31.12 0.20 -0.13 16 25 C -0.03 -0.20 9.21 22.52 0.21 0.01 16 26 H 0.39 -1.45 8.40 -74.06 -0.62 -2.08 16 27 H 0.11 0.56 7.77 -2.39 -0.02 0.55 16 28 H -0.29 -2.48 7.11 99.48 0.71 -1.77 16 29 H -0.29 -2.18 7.11 99.48 0.71 -1.48 16 30 H 0.18 -2.36 8.06 -2.91 -0.02 -2.38 16 31 H 0.17 -2.16 6.42 -2.91 -0.02 -2.18 16 32 H 0.42 -2.79 6.72 -92.71 -0.62 -3.41 16 33 H 0.14 -0.31 6.42 -2.91 -0.02 -0.33 16 34 H 0.14 -0.25 8.06 -2.91 -0.02 -0.28 16 35 H 0.14 0.00 8.06 -2.91 -0.02 -0.03 16 36 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 37 H 0.12 0.49 6.77 -2.91 -0.02 0.47 16 38 H 0.10 -0.99 8.09 -2.39 -0.02 -1.01 16 39 H 0.12 -0.99 7.86 -2.39 -0.02 -1.01 16 40 H 0.40 -4.91 9.12 -74.06 -0.68 -5.58 16 41 H 0.11 -0.02 6.12 -2.38 -0.01 -0.03 16 42 H 0.05 0.55 7.10 -2.39 -0.02 0.54 16 43 H 0.13 1.16 7.59 -2.91 -0.02 1.13 16 Total: 0.00 -24.76 358.19 -0.79 -25.55 By element: Atomic # 1 Polarization: -18.57 SS G_CDS: -0.79 Total: -19.36 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 2.89 Total: 3.62 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -1.59 Total: -1.47 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -3.93 Total: -13.27 kcal Atomic # 9 Polarization: 0.42 SS G_CDS: 0.61 Total: 1.03 kcal Atomic # 14 Polarization: 1.88 SS G_CDS: 2.03 Total: 3.91 kcal Total: -24.76 -0.79 -25.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_12496548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.396 kcal (2) G-P(sol) polarization free energy of solvation -24.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds