Wall clock time and date at job start Sat Mar 6 2021 23:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86299 * 109.46682 * 2 1 4 4 C 1.50701 * 109.47108 * 240.00628 * 2 1 3 5 5 C 1.35086 * 126.07881 * 104.04040 * 4 2 1 6 6 N 1.35041 * 107.98128 * 180.02562 * 5 4 2 7 7 C 1.46492 * 125.93327 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47303 * 124.99520 * 7 6 5 9 9 O 1.21281 * 119.99869 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00105 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99878 * 185.15100 * 10 8 7 12 12 C 1.50700 * 112.90877 * 69.42068 * 11 10 8 13 13 C 1.38229 * 119.99825 * 190.43646 * 12 11 10 14 14 C 1.38238 * 119.99458 * 179.78782 * 13 12 11 15 15 C 1.38236 * 120.00275 * 0.46315 * 14 13 12 16 16 C 1.38232 * 119.99699 * 359.76779 * 15 14 13 17 17 C 1.38230 * 120.00328 * 0.02680 * 16 15 14 18 18 C 1.53777 * 113.61289 * 298.16852 * 11 10 8 19 19 C 1.53787 * 87.17097 * 270.92449 * 18 11 10 20 20 H 1.09000 * 113.61672 * 219.97719 * 19 18 11 21 21 O 1.42899 * 113.61003 * 89.07707 * 19 18 11 22 22 C 1.53773 * 87.08402 * 334.52792 * 19 18 11 23 23 N 1.40076 * 108.13765 * 0.26332 * 6 5 4 24 24 C 1.31629 * 108.10675 * 359.55719 * 23 6 5 25 25 C 1.48419 * 126.03764 * 180.12960 * 24 23 6 26 26 C 1.39324 * 120.11680 * 139.56474 * 25 24 23 27 27 C 1.38025 * 119.87598 * 179.77479 * 26 25 24 28 28 C 1.38322 * 120.11824 * 0.48213 * 27 26 25 29 29 C 1.38321 * 120.24298 * 359.78921 * 28 27 26 30 30 C 1.38023 * 120.11630 * 359.96069 * 29 28 27 31 31 H 0.96694 * 113.99820 * 59.99844 * 1 2 3 32 32 H 1.08992 * 109.47494 * 120.00141 * 2 1 3 33 33 H 1.48495 * 110.00621 * 298.68189 * 3 2 1 34 34 H 1.48505 * 110.00101 * 60.00538 * 3 2 1 35 35 H 1.07994 * 126.00819 * 0.02562 * 5 4 2 36 36 H 1.09003 * 109.47039 * 4.99871 * 7 6 5 37 37 H 1.09003 * 109.47414 * 245.00297 * 7 6 5 38 38 H 0.96999 * 119.99688 * 5.14972 * 10 8 7 39 39 H 1.07992 * 120.00487 * 0.02562 * 13 12 11 40 40 H 1.08010 * 119.99856 * 180.25313 * 14 13 12 41 41 H 1.07999 * 119.99785 * 179.78673 * 15 14 13 42 42 H 1.08001 * 119.99734 * 179.97438 * 16 15 14 43 43 H 1.07996 * 120.00085 * 179.97438 * 17 16 15 44 44 H 1.09003 * 113.61239 * 156.33850 * 18 11 10 45 45 H 1.08995 * 113.61767 * 25.51781 * 18 11 10 46 46 H 0.96708 * 114.00155 * 179.97438 * 21 19 18 47 47 H 1.09001 * 113.61721 * 139.97715 * 22 19 18 48 48 H 1.08995 * 113.61755 * 270.79772 * 22 19 18 49 49 H 1.07997 * 120.05906 * 359.97438 * 26 25 24 50 50 H 1.07997 * 119.94232 * 180.27834 * 27 26 25 51 51 H 1.08001 * 119.87779 * 179.77167 * 28 27 26 52 52 H 1.07997 * 119.93913 * 179.97438 * 29 28 27 53 53 H 1.07998 * 120.05500 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.4463 -0.1238 -2.3331 6 7 2.7777 -1.0981 -3.2074 7 6 3.3700 -0.8992 -4.5324 8 6 4.6458 -1.6945 -4.6370 9 8 5.0228 -2.3622 -3.6973 10 7 5.3672 -1.6647 -5.7750 11 6 6.5452 -2.5238 -5.9183 12 6 6.1955 -3.9858 -6.0252 13 6 7.1908 -4.9419 -5.9482 14 6 6.8694 -6.2831 -6.0419 15 6 5.5539 -6.6678 -6.2221 16 6 4.5593 -5.7114 -6.3039 17 6 4.8800 -4.3704 -6.2060 18 6 7.6514 -2.2285 -4.8918 19 6 8.2075 -1.2076 -5.8985 20 1 9.2958 -1.2031 -5.9599 21 8 7.6533 0.1013 -5.7516 22 6 7.5320 -2.0426 -6.9990 23 7 2.4517 -2.3318 -2.6296 24 6 1.9469 -2.1037 -1.4356 25 6 1.4711 -3.1326 -0.4776 26 6 1.7419 -2.9997 0.8826 27 6 1.2931 -3.9572 1.7697 28 6 0.5843 -5.0521 1.3093 29 6 0.3175 -5.1918 -0.0407 30 6 0.7572 -4.2377 -0.9359 31 1 -0.3933 0.4417 -0.7650 32 1 1.7924 -0.5138 0.8899 33 1 1.5878 2.4587 -1.2241 34 1 1.5615 2.4679 1.2086 35 1 2.5710 0.9377 -2.4881 36 1 3.5885 0.1588 -4.6776 37 1 2.6695 -1.2338 -5.2976 38 1 5.1064 -1.0744 -6.4992 39 1 8.2189 -4.6413 -5.8111 40 1 7.6466 -7.0304 -5.9777 41 1 5.3034 -7.7155 -6.2988 42 1 3.5316 -6.0119 -6.4451 43 1 4.1029 -3.6232 -6.2702 44 1 8.3176 -3.0725 -4.7128 45 1 7.2832 -1.7772 -3.9706 46 1 7.9994 0.7481 -6.3818 47 1 7.0658 -1.4412 -7.7794 48 1 8.1659 -2.8349 -7.3971 49 1 2.2992 -2.1475 1.2425 50 1 1.4985 -3.8529 2.8249 51 1 0.2381 -5.8008 2.0065 52 1 -0.2360 -6.0489 -0.3949 53 1 0.5480 -4.3475 -1.9897 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_12622748.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:49:05 Heat of formation + Delta-G solvation = 70.193837 kcal Electronic energy + Delta-G solvation = -39054.829862 eV Core-core repulsion = 34247.489030 eV Total energy + Delta-G solvation = -4807.340833 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.173 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.55059 -42.00909 -39.99243 -39.64060 -39.19175 -37.82553 -36.19137 -34.84133 -34.05313 -32.34757 -32.01630 -31.73633 -31.67810 -31.39017 -28.79490 -26.95074 -26.23820 -25.58933 -24.19291 -23.55804 -23.45522 -22.57427 -21.87335 -21.52679 -20.99434 -20.26923 -18.86200 -18.70588 -18.32625 -17.83331 -17.63137 -17.37123 -16.86234 -16.53586 -16.44497 -16.22264 -16.14955 -15.69135 -15.66056 -15.55964 -15.44368 -15.28571 -15.06243 -14.69964 -14.40699 -14.34956 -14.31989 -14.20728 -14.02239 -13.81326 -13.71905 -13.56103 -13.30371 -13.14256 -12.97513 -12.58755 -12.37413 -12.32136 -12.25342 -12.16579 -11.97336 -11.88877 -11.61046 -11.50112 -11.08778 -10.92804 -10.63881 -10.33318 -10.06358 -9.89764 -9.87845 -9.79687 -9.61067 -9.30808 -4.85630 0.09052 0.36351 0.43971 0.44361 0.79256 1.26181 1.39466 1.55306 1.60275 1.67757 2.00250 2.05818 2.74847 2.87390 3.13792 3.32605 3.46309 3.52392 3.55145 3.63704 3.68361 3.70727 3.83639 3.91128 3.96211 4.03765 4.04651 4.04826 4.08740 4.16067 4.19747 4.22093 4.37393 4.41422 4.50973 4.54385 4.57533 4.59467 4.67568 4.76075 4.83487 4.86603 4.88534 4.96276 4.97271 5.00691 5.03013 5.09183 5.10336 5.27776 5.38666 5.50796 5.53910 5.55021 5.56656 5.59625 5.72299 5.89244 6.01584 6.04403 6.50145 6.57791 6.61859 6.94357 7.23490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.052 4.052 3 Si 0.768 3.232 4 C -0.260 4.260 5 C 0.072 3.928 6 N -0.356 5.356 7 C 0.109 3.891 8 C 0.500 3.500 9 O -0.546 6.546 10 N -0.686 5.686 11 C 0.195 3.805 12 C -0.083 4.083 13 C -0.123 4.123 14 C -0.126 4.126 15 C -0.136 4.136 16 C -0.135 4.135 17 C -0.118 4.118 18 C -0.139 4.139 19 C 0.091 3.909 20 H 0.089 0.911 21 O -0.561 6.561 22 C -0.146 4.146 23 N -0.287 5.287 24 C 0.109 3.891 25 C -0.025 4.025 26 C -0.106 4.106 27 C -0.124 4.124 28 C -0.120 4.120 29 C -0.128 4.128 30 C -0.113 4.113 31 H 0.382 0.618 32 H 0.108 0.892 33 H -0.257 1.257 34 H -0.301 1.301 35 H 0.215 0.785 36 H 0.173 0.827 37 H 0.136 0.864 38 H 0.419 0.581 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.134 0.866 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.054 0.946 46 H 0.399 0.601 47 H 0.100 0.900 48 H 0.114 0.886 49 H 0.134 0.866 50 H 0.148 0.852 51 H 0.147 0.853 52 H 0.141 0.859 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 5.307 -7.176 10.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.161 4.161 3 Si 0.671 3.329 4 C -0.272 4.272 5 C -0.073 4.073 6 N -0.137 5.137 7 C -0.015 4.015 8 C 0.285 3.715 9 O -0.421 6.421 10 N -0.339 5.339 11 C 0.108 3.892 12 C -0.084 4.084 13 C -0.141 4.141 14 C -0.144 4.144 15 C -0.153 4.153 16 C -0.153 4.153 17 C -0.136 4.136 18 C -0.177 4.177 19 C 0.031 3.969 20 H 0.107 0.893 21 O -0.369 6.369 22 C -0.184 4.184 23 N -0.109 5.109 24 C -0.057 4.057 25 C -0.027 4.027 26 C -0.125 4.125 27 C -0.142 4.142 28 C -0.138 4.138 29 C -0.146 4.146 30 C -0.133 4.133 31 H 0.230 0.770 32 H 0.125 0.875 33 H -0.182 1.182 34 H -0.228 1.228 35 H 0.232 0.768 36 H 0.190 0.810 37 H 0.153 0.847 38 H 0.257 0.743 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.132 0.868 44 H 0.123 0.877 45 H 0.073 0.927 46 H 0.249 0.751 47 H 0.118 0.882 48 H 0.132 0.868 49 H 0.152 0.848 50 H 0.166 0.834 51 H 0.165 0.835 52 H 0.159 0.841 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.801 4.229 -6.555 9.160 hybrid contribution -1.402 0.396 -0.583 1.569 sum 3.399 4.625 -7.139 9.160 Atomic orbital electron populations 1.86589 1.18909 1.80492 1.49632 1.24735 0.82984 1.11809 0.96525 0.94175 0.90077 0.70835 0.77857 1.20533 1.14374 0.92297 0.99972 1.22811 0.98425 0.96706 0.89344 1.48074 1.47566 1.03541 1.14557 1.21937 0.93095 1.04872 0.81635 1.20864 0.85630 0.82170 0.82789 1.90825 1.70385 1.42320 1.38604 1.45230 1.27587 1.43338 1.17781 1.19952 0.85068 0.85496 0.98695 1.20030 0.93645 0.95260 0.99442 1.21169 0.99758 0.92694 1.00457 1.21438 0.96939 0.96543 0.99489 1.21427 0.93442 1.00210 1.00266 1.21358 0.99975 0.93486 1.00439 1.20992 0.96276 0.96050 1.00255 1.23516 0.97307 0.99033 0.97857 1.22616 0.96927 0.82860 0.94486 0.89286 1.86455 1.69379 1.19408 1.61658 1.24034 0.96866 1.01014 0.96485 1.77726 1.19607 1.03857 1.09688 1.20827 0.98586 0.93576 0.92691 1.17979 0.99288 0.93356 0.92103 1.21355 0.99689 0.99805 0.91686 1.21421 0.97982 0.94062 1.00717 1.21576 0.97960 0.98385 0.95858 1.21356 1.00269 0.99218 0.93719 1.21254 0.98240 0.93966 0.99813 0.76961 0.87461 1.18244 1.22834 0.76832 0.80964 0.84663 0.74282 0.84157 0.84134 0.84856 0.85744 0.86808 0.87672 0.92689 0.75085 0.88178 0.86808 0.84824 0.83387 0.83521 0.84124 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.58 12.88 -148.98 -1.92 -5.49 16 2 C -0.05 -0.18 2.50 71.24 0.18 -0.01 16 3 Si 0.77 -1.25 30.83 68.60 2.12 0.87 16 4 C -0.26 -1.55 5.34 -19.95 -0.11 -1.65 16 5 C 0.07 0.08 9.96 83.47 0.83 0.91 16 6 N -0.36 -1.65 3.40 -351.93 -1.19 -2.85 16 7 C 0.11 -0.41 6.99 85.63 0.60 0.19 16 8 C 0.50 1.51 6.23 87.66 0.55 2.06 16 9 O -0.55 -7.87 14.10 -3.03 -0.04 -7.92 16 10 N -0.69 1.89 3.78 -423.50 -1.60 0.29 16 11 C 0.20 -0.07 0.96 3.48 0.00 -0.07 16 12 C -0.08 -0.36 4.95 -19.87 -0.10 -0.46 16 13 C -0.12 -0.40 8.58 22.27 0.19 -0.21 16 14 C -0.13 -0.48 10.05 22.27 0.22 -0.26 16 15 C -0.14 -0.72 10.05 22.27 0.22 -0.50 16 16 C -0.13 -0.92 10.05 22.27 0.22 -0.70 16 17 C -0.12 -0.78 8.99 22.27 0.20 -0.58 16 18 C -0.14 -0.26 6.55 31.12 0.20 -0.06 16 19 C 0.09 -0.46 5.28 31.12 0.16 -0.30 16 20 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 21 O -0.56 3.02 13.09 -148.98 -1.95 1.07 16 22 C -0.15 1.00 7.13 31.21 0.22 1.22 16 23 N -0.29 -3.87 11.68 -48.15 -0.56 -4.43 16 24 C 0.11 1.34 6.68 42.53 0.28 1.63 16 25 C -0.03 -0.32 5.76 -20.04 -0.12 -0.44 16 26 C -0.11 -1.00 8.89 22.48 0.20 -0.80 16 27 C -0.12 -0.78 10.03 22.24 0.22 -0.56 16 28 C -0.12 -0.69 10.04 22.31 0.22 -0.46 16 29 C -0.13 -1.00 10.03 22.24 0.22 -0.77 16 30 C -0.11 -1.35 9.77 22.48 0.22 -1.13 16 31 H 0.38 0.05 8.70 -74.06 -0.64 -0.60 16 32 H 0.11 0.44 5.38 -2.39 -0.01 0.43 16 33 H -0.26 0.48 6.97 99.48 0.69 1.18 16 34 H -0.30 -1.83 7.11 99.48 0.71 -1.13 16 35 H 0.22 -1.66 6.34 -2.91 -0.02 -1.67 16 36 H 0.17 -2.30 8.07 -2.39 -0.02 -2.32 16 37 H 0.14 -1.08 8.14 -2.39 -0.02 -1.10 16 38 H 0.42 -4.08 8.70 -92.71 -0.81 -4.88 16 39 H 0.14 -0.22 6.71 -2.91 -0.02 -0.24 16 40 H 0.14 -0.09 8.06 -2.91 -0.02 -0.11 16 41 H 0.13 0.23 8.06 -2.91 -0.02 0.21 16 42 H 0.12 0.56 8.06 -2.91 -0.02 0.53 16 43 H 0.11 0.58 6.60 -2.91 -0.02 0.56 16 44 H 0.11 0.07 6.35 -2.39 -0.02 0.06 16 45 H 0.05 0.53 6.90 -2.39 -0.02 0.52 16 46 H 0.40 -5.57 9.12 -74.05 -0.68 -6.25 16 47 H 0.10 -1.01 8.11 -2.39 -0.02 -1.03 16 48 H 0.11 -0.91 7.71 -2.39 -0.02 -0.93 16 49 H 0.13 0.85 6.00 -2.91 -0.02 0.83 16 50 H 0.15 0.13 8.06 -2.91 -0.02 0.11 16 51 H 0.15 0.04 8.06 -2.91 -0.02 0.02 16 52 H 0.14 0.45 8.06 -2.91 -0.02 0.43 16 53 H 0.11 1.38 8.06 -2.91 -0.02 1.35 16 Total: 0.00 -34.75 435.99 -1.39 -36.15 By element: Atomic # 1 Polarization: -13.66 SS G_CDS: -1.10 Total: -14.76 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 4.86 Total: -2.92 kcal Atomic # 7 Polarization: -3.63 SS G_CDS: -3.36 Total: -6.99 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -3.91 Total: -12.34 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: 2.12 Total: 0.87 kcal Total: -34.75 -1.39 -36.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_12622748.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.341 kcal (2) G-P(sol) polarization free energy of solvation -34.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds