Wall clock time and date at job start Sat Mar 6 2021 23:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.46945 * 2 1 4 4 C 1.50691 * 109.47541 * 120.00297 * 2 1 3 5 5 C 1.34844 * 125.65157 * 64.95018 * 4 2 1 6 6 C 1.40798 * 107.04726 * 180.02562 * 5 4 2 7 7 C 1.36098 * 106.73624 * 359.97438 * 6 5 4 8 8 C 1.47568 * 125.94581 * 180.02562 * 7 6 5 9 9 C 1.39563 * 119.95823 * 180.02562 * 8 7 6 10 10 C 1.38319 * 119.81759 * 180.02562 * 9 8 7 11 11 O 1.35671 * 120.13901 * 179.97438 * 10 9 8 12 12 C 1.40372 * 119.72060 * 359.97438 * 10 9 8 13 13 C 1.47291 * 120.04234 * 180.02562 * 12 10 9 14 14 O 1.21622 * 120.00347 * 359.97438 * 13 12 10 15 15 N 1.34778 * 119.99795 * 180.02562 * 13 12 10 16 16 C 1.46501 * 119.99932 * 174.89907 * 15 13 12 17 17 C 1.50697 * 112.85385 * 295.31424 * 16 15 13 18 18 C 1.38231 * 119.99909 * 163.98420 * 17 16 15 19 19 C 1.38235 * 119.99601 * 179.78944 * 18 17 16 20 20 C 1.38235 * 120.00012 * 0.43689 * 19 18 17 21 21 C 1.38225 * 120.00233 * 359.81025 * 20 19 18 22 22 C 1.38235 * 120.00018 * 359.97438 * 21 20 19 23 23 C 1.53785 * 113.61283 * 164.11295 * 16 15 13 24 24 C 1.53780 * 87.08458 * 270.88814 * 23 16 15 25 25 H 1.09001 * 113.61421 * 220.02081 * 24 23 16 26 26 O 1.42897 * 113.61319 * 89.19847 * 24 23 16 27 27 C 1.53785 * 113.61027 * 66.51375 * 16 15 13 28 28 C 1.39909 * 119.90865 * 0.02562 * 12 10 9 29 29 C 1.36394 * 120.18734 * 359.71704 * 28 12 10 30 30 O 1.34231 * 125.65678 * 244.97634 * 4 2 1 31 31 H 0.96699 * 113.99459 * 299.99445 * 1 2 3 32 32 H 1.09005 * 109.47043 * 240.00516 * 2 1 3 33 33 H 1.48503 * 109.99912 * 178.68303 * 3 2 1 34 34 H 1.48491 * 110.00388 * 300.00270 * 3 2 1 35 35 H 1.08000 * 126.47129 * 0.02562 * 5 4 2 36 36 H 1.08001 * 126.62795 * 180.26565 * 6 5 4 37 37 H 1.08002 * 120.09503 * 359.97438 * 9 8 7 38 38 H 0.96702 * 114.00158 * 89.99988 * 11 10 9 39 39 H 0.97001 * 119.99952 * 354.90364 * 15 13 12 40 40 H 1.07997 * 120.00244 * 359.97438 * 18 17 16 41 41 H 1.08006 * 120.00171 * 180.27391 * 19 18 17 42 42 H 1.08013 * 119.99756 * 179.83718 * 20 19 18 43 43 H 1.07997 * 120.00619 * 180.02562 * 21 20 19 44 44 H 1.08000 * 120.00069 * 179.97438 * 22 21 20 45 45 H 1.09000 * 113.61160 * 25.44174 * 23 16 15 46 46 H 1.09000 * 113.61440 * 156.33544 * 23 16 15 47 47 H 0.96703 * 113.99995 * 180.02562 * 26 24 23 48 48 H 1.09005 * 113.60757 * 203.66074 * 27 16 15 49 49 H 1.09000 * 113.61718 * 334.55847 * 27 16 15 50 50 H 1.08006 * 119.90554 * 180.02562 * 28 12 10 51 51 H 1.08001 * 119.86108 * 180.27539 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2303 5 6 1.7561 -2.0179 1.5096 6 6 2.3798 -2.2628 2.7479 7 6 2.9082 -1.0787 3.1615 8 6 3.6581 -0.8546 4.4125 9 6 4.1461 0.4176 4.7142 10 6 4.8491 0.6242 5.8874 11 8 5.3269 1.8582 6.1869 12 6 5.0661 -0.4482 6.7668 13 6 5.8133 -0.2360 8.0182 14 8 6.2431 0.8687 8.2901 15 7 6.0215 -1.2665 8.8617 16 6 6.8585 -1.0828 10.0499 17 6 8.2954 -0.7788 9.7124 18 6 9.1367 -0.2576 10.6774 19 6 10.4559 0.0171 10.3689 20 6 10.9313 -0.2209 9.0929 21 6 10.0887 -0.7373 8.1265 22 6 8.7707 -1.0162 8.4362 23 6 6.6941 -2.1966 11.0974 24 6 5.5588 -1.3532 11.7012 25 1 5.5489 -1.3507 12.7912 26 8 4.2763 -1.6307 11.1353 27 6 6.2530 -0.1226 11.0874 28 6 4.5717 -1.7188 6.4528 29 6 3.8744 -1.9172 5.2975 30 8 2.6273 -0.1465 2.2302 31 1 -0.3932 0.4416 0.7651 32 1 1.7924 -0.5138 -0.8901 33 1 3.5346 1.7703 0.0321 34 1 1.5615 2.4679 -1.2084 35 1 1.2356 -2.7406 0.8987 36 1 2.4330 -3.2085 3.2667 37 1 3.9761 1.2384 4.0332 38 1 4.7111 2.4064 6.6922 39 1 5.6172 -2.1297 8.6819 40 1 8.7642 -0.0678 11.6732 41 1 11.1145 0.4202 11.1241 42 1 11.9614 -0.0038 8.8512 43 1 10.4602 -0.9237 7.1297 44 1 8.1122 -1.4193 7.6810 45 1 6.3580 -3.1447 10.6775 46 1 7.5549 -2.3063 11.7570 47 1 3.5582 -1.1030 11.5107 48 1 6.9935 0.3338 11.7443 49 1 5.5610 0.6028 10.6595 50 1 4.7383 -2.5438 7.1296 51 1 3.4913 -2.8992 5.0625 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_12807986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:49:16 Heat of formation + Delta-G solvation = -35.459959 kcal Electronic energy + Delta-G solvation = -38489.876868 eV Core-core repulsion = 33482.517219 eV Total energy + Delta-G solvation = -5007.359649 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.150 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.75798 -42.21898 -40.99801 -39.40071 -38.99360 -38.09498 -37.83030 -36.15389 -34.52352 -34.12370 -33.04738 -31.76583 -31.66355 -31.28757 -30.41759 -27.22860 -26.92726 -25.79030 -24.41777 -24.06207 -23.50561 -22.71335 -22.34503 -21.87920 -21.35915 -20.28453 -19.71140 -18.85887 -18.60270 -18.47415 -17.86594 -17.71598 -17.42472 -17.18201 -16.63183 -16.47890 -16.37572 -16.05983 -15.85534 -15.74720 -15.62698 -15.46301 -15.17046 -14.92496 -14.75504 -14.41354 -14.32211 -14.26989 -14.00348 -13.90418 -13.86654 -13.61984 -13.57352 -13.50866 -13.27188 -12.91530 -12.83331 -12.72172 -12.43264 -12.27616 -12.02605 -11.97728 -11.87154 -11.49390 -11.14221 -10.96221 -10.74095 -10.69926 -10.58767 -10.06267 -9.96136 -9.85322 -9.58222 -9.02622 -5.06879 -0.79374 0.13382 0.39100 0.46391 0.63881 1.12136 1.38664 1.45258 1.73408 1.85870 1.94369 2.01342 2.64510 2.77841 3.00573 3.12089 3.27988 3.40739 3.49873 3.57869 3.61213 3.63595 3.80060 3.85041 3.86611 3.97132 3.98082 4.04889 4.08588 4.20950 4.22109 4.30301 4.38723 4.39398 4.58810 4.62049 4.62933 4.68803 4.70291 4.77775 4.80710 4.87405 4.89718 4.98660 5.01740 5.04621 5.06681 5.09264 5.13444 5.20299 5.40922 5.41498 5.51736 5.53650 5.59164 5.74659 5.95227 6.07105 6.51074 6.59228 6.69500 6.85524 7.23468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.023 4.023 3 Si 0.769 3.231 4 C -0.053 4.053 5 C -0.184 4.184 6 C -0.173 4.173 7 C 0.006 3.994 8 C 0.025 3.975 9 C -0.152 4.152 10 C 0.162 3.838 11 O -0.494 6.494 12 C -0.178 4.178 13 C 0.561 3.439 14 O -0.548 6.548 15 N -0.687 5.687 16 C 0.191 3.809 17 C -0.080 4.080 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.134 4.134 21 C -0.135 4.135 22 C -0.121 4.121 23 C -0.118 4.118 24 C 0.088 3.912 25 H 0.093 0.907 26 O -0.561 6.561 27 C -0.168 4.168 28 C -0.054 4.054 29 C -0.110 4.110 30 O -0.174 6.174 31 H 0.400 0.600 32 H 0.138 0.862 33 H -0.298 1.298 34 H -0.276 1.276 35 H 0.166 0.834 36 H 0.181 0.819 37 H 0.141 0.859 38 H 0.408 0.592 39 H 0.412 0.588 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.125 0.875 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.125 0.875 47 H 0.396 0.604 48 H 0.107 0.893 49 H 0.060 0.940 50 H 0.164 0.836 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 -4.437 5.193 7.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.134 4.134 3 Si 0.674 3.326 4 C -0.103 4.103 5 C -0.203 4.203 6 C -0.192 4.192 7 C -0.043 4.043 8 C 0.025 3.975 9 C -0.170 4.170 10 C 0.115 3.885 11 O -0.307 6.307 12 C -0.182 4.182 13 C 0.349 3.651 14 O -0.426 6.426 15 N -0.339 5.339 16 C 0.103 3.897 17 C -0.081 4.081 18 C -0.138 4.138 19 C -0.142 4.142 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.140 4.140 23 C -0.155 4.155 24 C 0.029 3.971 25 H 0.111 0.889 26 O -0.369 6.369 27 C -0.207 4.207 28 C -0.072 4.072 29 C -0.127 4.127 30 O -0.072 6.072 31 H 0.250 0.750 32 H 0.155 0.845 33 H -0.226 1.226 34 H -0.202 1.202 35 H 0.183 0.817 36 H 0.198 0.802 37 H 0.158 0.842 38 H 0.268 0.732 39 H 0.250 0.750 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.143 0.857 44 H 0.127 0.873 45 H 0.109 0.891 46 H 0.143 0.857 47 H 0.245 0.755 48 H 0.125 0.875 49 H 0.079 0.921 50 H 0.182 0.818 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.073 -3.664 3.795 5.668 hybrid contribution -0.554 -0.087 -0.213 0.600 sum -2.627 -3.752 3.581 5.814 Atomic orbital electron populations 1.86534 1.15812 1.82091 1.50336 1.24405 0.85453 1.10853 0.92707 0.93367 0.78035 0.75849 0.85325 1.23240 1.00452 0.94329 0.92275 1.21837 1.04195 0.95811 0.98437 1.22231 1.00888 0.98937 0.97131 1.20550 1.04504 0.87952 0.91298 1.17914 0.95550 0.93869 0.90205 1.21585 0.99397 0.98125 0.97942 1.18454 0.92187 0.85705 0.92115 1.84739 1.45666 1.23534 1.76739 1.20574 1.05400 0.95992 0.96189 1.18088 0.79372 0.84388 0.83249 1.90825 1.51075 1.24859 1.75824 1.45325 1.50890 1.14005 1.23676 1.19992 0.85834 0.98941 0.84885 1.19974 0.95126 0.98971 0.94044 1.21197 0.93651 0.99037 0.99936 1.21446 0.96058 0.99645 0.97098 1.21430 1.00556 0.99433 0.93795 1.21350 0.94138 0.99758 1.00049 1.20999 0.95736 1.00733 0.96503 1.23462 0.98608 0.97143 0.96307 1.22738 0.83614 0.93722 0.97037 0.88881 1.86369 1.17017 1.66491 1.66992 1.24165 1.00995 0.97713 0.97810 1.21119 0.94005 0.95243 0.96838 1.21021 0.99352 0.99346 0.93030 1.83921 1.57942 1.38481 1.26832 0.74972 0.84458 1.22561 1.20245 0.81653 0.80204 0.84151 0.73226 0.74952 0.83893 0.83962 0.84720 0.85714 0.87284 0.89082 0.85712 0.75451 0.87530 0.92076 0.81832 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.85 12.88 -148.98 -1.92 -1.07 16 2 C -0.02 0.02 2.98 71.23 0.21 0.24 16 3 Si 0.77 -0.30 32.11 68.60 2.20 1.91 16 4 C -0.05 -0.08 6.21 24.90 0.15 0.08 16 5 C -0.18 -0.10 10.78 22.12 0.24 0.14 16 6 C -0.17 0.11 10.25 22.40 0.23 0.34 16 7 C 0.01 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.04 5.87 -20.08 -0.12 -0.08 16 9 C -0.15 -0.60 9.65 22.61 0.22 -0.39 16 10 C 0.16 0.98 6.71 22.81 0.15 1.14 16 11 O -0.49 -4.17 11.56 -68.88 -0.80 -4.96 16 12 C -0.18 -0.68 5.89 -19.97 -0.12 -0.80 16 13 C 0.56 3.73 6.14 86.62 0.53 4.26 16 14 O -0.55 -7.79 13.63 16.90 0.23 -7.56 16 15 N -0.69 -0.70 3.79 -427.26 -1.62 -2.32 16 16 C 0.19 0.20 0.92 3.39 0.00 0.21 16 17 C -0.08 -0.41 4.69 -19.87 -0.09 -0.50 16 18 C -0.12 -0.37 8.86 22.27 0.20 -0.18 16 19 C -0.12 -0.42 10.05 22.27 0.22 -0.20 16 20 C -0.13 -0.68 10.05 22.27 0.22 -0.46 16 21 C -0.13 -0.97 10.05 22.27 0.22 -0.74 16 22 C -0.12 -0.95 8.80 22.27 0.20 -0.75 16 23 C -0.12 0.49 7.12 31.12 0.22 0.71 16 24 C 0.09 -0.39 5.28 31.21 0.16 -0.23 16 25 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 26 O -0.56 2.01 13.09 -148.98 -1.95 0.05 16 27 C -0.17 -0.04 6.62 31.21 0.21 0.17 16 28 C -0.05 0.15 9.46 22.24 0.21 0.36 16 29 C -0.11 0.36 9.48 22.26 0.21 0.57 16 30 O -0.17 -0.62 8.79 -6.03 -0.05 -0.68 16 31 H 0.40 -3.66 8.70 -74.06 -0.64 -4.31 16 32 H 0.14 -0.27 7.96 -2.38 -0.02 -0.29 16 33 H -0.30 -2.17 7.11 99.48 0.71 -1.46 16 34 H -0.28 -1.27 7.11 99.48 0.71 -0.56 16 35 H 0.17 -0.36 8.06 -2.91 -0.02 -0.38 16 36 H 0.18 -1.18 7.24 -2.91 -0.02 -1.20 16 37 H 0.14 0.48 7.90 -2.91 -0.02 0.45 16 38 H 0.41 0.46 9.06 -74.06 -0.67 -0.21 16 39 H 0.41 -1.52 6.68 -92.71 -0.62 -2.14 16 40 H 0.14 -0.29 6.38 -2.91 -0.02 -0.31 16 41 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 42 H 0.13 0.17 8.06 -2.90 -0.02 0.14 16 43 H 0.12 0.58 8.06 -2.91 -0.02 0.56 16 44 H 0.11 0.82 6.74 -2.91 -0.02 0.80 16 45 H 0.09 -0.45 8.09 -2.39 -0.02 -0.47 16 46 H 0.12 -0.83 7.88 -2.39 -0.02 -0.85 16 47 H 0.40 -3.75 9.12 -74.06 -0.68 -4.43 16 48 H 0.11 -0.17 6.09 -2.38 -0.01 -0.19 16 49 H 0.06 0.34 7.30 -2.39 -0.02 0.32 16 50 H 0.16 -1.48 6.39 -2.91 -0.02 -1.50 16 51 H 0.17 -1.56 6.95 -2.91 -0.02 -1.58 16 Total: 0.00 -27.35 425.81 -1.76 -29.11 By element: Atomic # 1 Polarization: -17.05 SS G_CDS: -1.52 Total: -18.57 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 3.66 Total: 4.08 kcal Atomic # 7 Polarization: -0.70 SS G_CDS: -1.62 Total: -2.32 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -4.49 Total: -14.22 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: 2.20 Total: 1.91 kcal Total: -27.35 -1.76 -29.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_12807986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.345 kcal (2) G-P(sol) polarization free energy of solvation -27.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds