Wall clock time and date at job start Sat Mar 6 2021 23:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86303 * 109.46797 * 2 1 4 4 C 1.50696 * 109.47151 * 120.00082 * 2 1 3 5 5 C 1.38331 * 119.87328 * 64.99921 * 4 2 1 6 6 C 1.37998 * 120.13055 * 180.02562 * 5 4 2 7 7 C 1.39400 * 119.86986 * 0.02562 * 6 5 4 8 8 C 1.48274 * 120.13002 * 179.97438 * 7 6 5 9 9 C 1.39505 * 119.98120 * 180.02562 * 8 7 6 10 10 C 1.37660 * 120.02673 * 179.97438 * 9 8 7 11 11 C 1.39712 * 119.97724 * 0.02562 * 10 9 8 12 12 C 1.47722 * 120.02237 * 179.72236 * 11 10 9 13 13 O 1.21568 * 120.00274 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99341 * 179.97438 * 12 11 10 15 15 C 1.46507 * 119.99685 * 174.90427 * 14 12 11 16 16 C 1.50696 * 112.84985 * 295.31642 * 15 14 12 17 17 C 1.38231 * 119.99990 * 163.98096 * 16 15 14 18 18 C 1.38238 * 119.99940 * 179.74452 * 17 16 15 19 19 C 1.38240 * 120.00128 * 0.54822 * 18 17 16 20 20 C 1.38232 * 119.99495 * 359.70180 * 19 18 17 21 21 C 1.38230 * 120.00657 * 0.02649 * 20 19 18 22 22 C 1.53779 * 113.61327 * 164.11573 * 15 14 12 23 23 C 1.54043 * 86.98765 * 270.83879 * 22 15 14 24 24 H 1.09001 * 113.62646 * 220.02308 * 23 22 15 25 25 O 1.42904 * 113.69033 * 89.12773 * 23 22 15 26 26 C 1.53779 * 113.60987 * 66.50938 * 15 14 12 27 27 C 1.39706 * 119.94977 * 0.02562 * 11 10 9 28 28 C 1.37665 * 119.97605 * 359.95237 * 27 11 10 29 29 C 1.39403 * 119.74575 * 0.25232 * 7 6 5 30 30 C 1.37998 * 119.87119 * 359.49566 * 29 7 6 31 31 H 0.96703 * 114.00277 * 60.00199 * 1 2 3 32 32 H 1.09003 * 109.47329 * 240.00509 * 2 1 3 33 33 H 1.48492 * 110.00211 * 298.68094 * 3 2 1 34 34 H 1.48503 * 109.99893 * 59.99987 * 3 2 1 35 35 H 1.08003 * 119.93207 * 0.02562 * 5 4 2 36 36 H 1.08003 * 120.06691 * 179.97438 * 6 5 4 37 37 H 1.07998 * 119.98476 * 0.02562 * 9 8 7 38 38 H 1.08003 * 120.01314 * 180.02562 * 10 9 8 39 39 H 0.96997 * 120.00277 * 354.90773 * 14 12 11 40 40 H 1.08001 * 120.00318 * 359.97438 * 17 16 15 41 41 H 1.07998 * 120.00142 * 180.27047 * 18 17 16 42 42 H 1.08001 * 119.99944 * 179.72567 * 19 18 17 43 43 H 1.08001 * 119.99927 * 179.97438 * 20 19 18 44 44 H 1.07998 * 120.00481 * 179.97438 * 21 20 19 45 45 H 1.09002 * 113.61525 * 25.43928 * 22 15 14 46 46 H 1.09001 * 113.61142 * 156.33238 * 22 15 14 47 47 H 0.96696 * 113.99921 * 82.46771 * 25 23 22 48 48 H 1.09000 * 113.61360 * 203.66572 * 26 15 14 49 49 H 1.09002 * 113.61799 * 334.56808 * 26 15 14 50 50 H 1.08003 * 120.01116 * 179.97438 * 27 11 10 51 51 H 1.07998 * 119.98833 * 180.02562 * 28 27 11 52 52 H 1.08008 * 120.06277 * 179.72154 * 29 7 6 53 53 H 1.07998 * 119.93928 * 180.27488 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6830 -2.0612 1.3958 6 6 2.1401 -2.7169 2.5207 7 6 2.8528 -2.0153 3.4917 8 6 3.3461 -2.7139 4.7030 9 6 4.0586 -2.0086 5.6730 10 6 4.5166 -2.6562 6.7982 11 6 4.2681 -4.0205 6.9681 12 6 4.7644 -4.7178 8.1722 13 8 5.3888 -4.1044 9.0158 14 7 4.5239 -6.0338 8.3358 15 6 5.1097 -6.7497 9.4719 16 6 6.6146 -6.8046 9.4160 17 6 7.3365 -7.1394 10.5463 18 6 8.7167 -7.1949 10.4936 19 6 9.3756 -6.9046 9.3135 20 6 8.6539 -6.5648 8.1846 21 6 7.2735 -6.5147 8.2357 22 6 4.4532 -8.1132 9.7455 23 6 3.4655 -7.3630 10.6591 24 1 3.2266 -7.8990 11.5777 25 8 2.3040 -6.8839 9.9783 26 6 4.5600 -6.2970 10.8349 27 6 3.5554 -4.7261 5.9955 28 6 3.0980 -4.0764 4.8714 29 6 3.0950 -0.6529 3.3225 30 6 2.6376 -0.0088 2.1910 31 1 -0.3934 0.4417 -0.7651 32 1 1.7924 -0.5138 -0.8900 33 1 1.5878 2.4586 -1.2241 34 1 1.5613 2.4679 1.2085 35 1 1.1304 -2.6036 0.6429 36 1 1.9453 -3.7714 2.6489 37 1 4.2502 -0.9539 5.5417 38 1 5.0678 -2.1099 7.5492 39 1 3.9630 -6.5069 7.7014 40 1 6.8220 -7.3612 11.4696 41 1 9.2805 -7.4607 11.3755 42 1 10.4542 -6.9436 9.2736 43 1 9.1687 -6.3376 7.2627 44 1 6.7097 -6.2489 7.3538 45 1 3.9861 -8.5572 8.8665 46 1 5.0995 -8.8095 10.2798 47 1 1.6121 -7.5497 9.8647 48 1 5.2354 -6.4977 11.6665 49 1 4.1790 -5.2757 10.8347 50 1 3.3631 -5.7809 6.1257 51 1 2.5467 -4.6216 4.1196 52 1 3.6428 -0.1033 4.0738 53 1 2.8284 1.0456 2.0567 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_13158362.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:49:25 Heat of formation + Delta-G solvation = 13.240714 kcal Electronic energy + Delta-G solvation = -36513.580974 eV Core-core repulsion = 31861.933769 eV Total energy + Delta-G solvation = -4651.647205 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.166 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.20414 -41.08125 -40.18406 -39.31195 -38.91427 -37.65681 -36.23549 -34.56398 -33.75473 -32.56289 -31.82157 -31.65961 -31.56270 -30.76148 -27.21401 -26.94582 -25.79003 -24.65779 -24.34188 -23.50497 -22.68398 -22.54147 -22.09983 -21.28805 -20.25338 -19.29852 -18.62268 -18.57434 -18.06064 -17.80284 -17.19355 -16.93126 -16.66406 -16.44532 -16.15790 -15.94656 -15.66290 -15.54590 -15.39728 -15.28352 -15.16696 -14.94657 -14.86435 -14.57532 -14.38897 -14.31566 -14.08831 -14.00984 -13.95640 -13.73221 -13.57941 -13.30705 -13.18250 -12.93999 -12.89744 -12.54771 -12.34421 -12.22878 -12.09722 -11.93318 -11.90845 -11.62861 -11.46626 -10.97066 -10.93946 -10.76116 -10.47163 -10.08800 -10.07183 -9.95987 -9.84823 -9.58484 -9.07517 -4.94854 -0.68831 0.33842 0.39367 0.39822 0.46870 0.50350 1.27885 1.57284 1.81996 1.92417 2.00209 2.58352 2.77931 2.98246 3.12975 3.35808 3.43774 3.47127 3.59436 3.61102 3.68863 3.72284 3.83548 3.85345 3.87021 4.00017 4.02192 4.07318 4.09654 4.22934 4.24203 4.27623 4.35040 4.37440 4.44105 4.58802 4.61801 4.63897 4.67780 4.69047 4.81541 4.85813 4.88350 4.90735 4.97076 4.98874 5.05175 5.07174 5.12642 5.13286 5.19655 5.26878 5.39694 5.41154 5.49846 5.54056 5.59853 5.64288 5.73018 5.79172 5.92030 6.07632 6.48387 6.56501 6.91817 7.18800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.085 4.085 3 Si 0.758 3.242 4 C -0.081 4.081 5 C -0.101 4.101 6 C -0.107 4.107 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.122 4.122 10 C -0.071 4.071 11 C -0.151 4.151 12 C 0.560 3.440 13 O -0.568 6.568 14 N -0.684 5.684 15 C 0.189 3.811 16 C -0.080 4.080 17 C -0.122 4.122 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.146 4.146 23 C 0.087 3.913 24 H 0.094 0.906 25 O -0.565 6.565 26 C -0.141 4.141 27 C -0.074 4.074 28 C -0.118 4.118 29 C -0.108 4.108 30 C -0.123 4.123 31 H 0.395 0.605 32 H 0.098 0.902 33 H -0.286 1.286 34 H -0.300 1.300 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.125 0.875 39 H 0.413 0.587 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.119 0.881 47 H 0.398 0.602 48 H 0.115 0.885 49 H 0.051 0.949 50 H 0.154 0.846 51 H 0.157 0.843 52 H 0.145 0.855 53 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -5.956 -3.636 6.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.194 4.194 3 Si 0.664 3.336 4 C -0.081 4.081 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.140 4.140 10 C -0.090 4.090 11 C -0.154 4.154 12 C 0.349 3.651 13 O -0.447 6.447 14 N -0.335 5.335 15 C 0.102 3.898 16 C -0.082 4.082 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.151 4.151 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.184 4.184 23 C 0.028 3.972 24 H 0.112 0.888 25 O -0.373 6.373 26 C -0.179 4.179 27 C -0.093 4.093 28 C -0.136 4.136 29 C -0.125 4.125 30 C -0.141 4.141 31 H 0.245 0.755 32 H 0.116 0.884 33 H -0.213 1.213 34 H -0.228 1.228 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.143 0.857 39 H 0.252 0.748 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.129 0.871 45 H 0.116 0.884 46 H 0.137 0.863 47 H 0.249 0.751 48 H 0.133 0.867 49 H 0.070 0.930 50 H 0.171 0.829 51 H 0.174 0.826 52 H 0.163 0.837 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.385 -4.488 -2.522 5.163 hybrid contribution -1.570 -0.251 -0.747 1.757 sum -1.185 -4.739 -3.269 5.878 Atomic orbital electron populations 1.86547 1.18487 1.80657 1.51106 1.24985 0.84061 1.11593 0.98724 0.94162 0.90500 0.72592 0.76308 1.19605 0.98323 0.94576 0.95629 1.21133 0.98715 0.93943 0.98149 1.21527 0.96809 1.01098 0.93043 1.18925 0.99310 0.93767 0.93998 1.19121 0.96069 0.93898 0.93131 1.21369 0.98313 1.01191 0.93116 1.21221 0.97104 0.93395 0.97313 1.20038 1.04133 0.95188 0.96007 1.18451 0.78769 0.82138 0.85754 1.90772 1.42274 1.66800 1.44883 1.45294 1.51582 1.08374 1.28299 1.20020 0.88133 0.94686 0.86985 1.19943 0.94760 0.99364 0.94094 1.21188 0.94398 1.00431 0.98005 1.21444 0.94582 0.99540 0.98670 1.21447 1.00903 0.99608 0.93154 1.21366 0.94178 1.00044 0.99428 1.21020 0.94805 1.00258 0.97961 1.24045 0.98502 0.93918 1.01939 1.22737 0.85145 0.94322 0.95008 0.88834 1.86491 1.28424 1.42634 1.79780 1.23593 0.97541 0.99623 0.97162 1.21432 0.94815 1.00703 0.92337 1.21457 1.00273 0.93490 0.98373 1.21446 0.99487 0.93798 0.97818 1.21120 0.98971 1.00155 0.93827 0.75454 0.88423 1.21333 1.22810 0.84637 0.83356 0.83518 0.85719 0.74826 0.84114 0.84003 0.84556 0.85318 0.87067 0.88435 0.86258 0.75132 0.86711 0.92990 0.82877 0.82561 0.83696 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.14 12.81 -148.98 -1.91 -3.05 16 2 C -0.08 0.07 2.79 71.23 0.20 0.27 16 3 Si 0.76 -1.27 29.84 68.60 2.05 0.77 16 4 C -0.08 -0.16 5.39 -19.82 -0.11 -0.27 16 5 C -0.10 -0.13 9.67 22.23 0.21 0.08 16 6 C -0.11 -0.02 9.43 22.49 0.21 0.19 16 7 C -0.06 -0.11 5.88 -20.05 -0.12 -0.22 16 8 C -0.02 -0.04 5.88 -19.99 -0.12 -0.16 16 9 C -0.12 -0.36 9.41 22.44 0.21 -0.15 16 10 C -0.07 -0.46 9.58 22.49 0.22 -0.25 16 11 C -0.15 -0.84 5.88 -20.06 -0.12 -0.96 16 12 C 0.56 4.95 6.15 86.75 0.53 5.49 16 13 O -0.57 -9.67 14.83 -3.93 -0.06 -9.73 16 14 N -0.68 -1.69 3.79 -426.87 -1.62 -3.30 16 15 C 0.19 0.41 0.92 3.38 0.00 0.41 16 16 C -0.08 -0.43 4.69 -19.87 -0.09 -0.52 16 17 C -0.12 -0.41 8.86 22.27 0.20 -0.21 16 18 C -0.12 -0.39 10.05 22.27 0.22 -0.16 16 19 C -0.13 -0.56 10.05 22.27 0.22 -0.34 16 20 C -0.13 -0.79 10.05 22.27 0.22 -0.56 16 21 C -0.12 -0.87 8.81 22.27 0.20 -0.67 16 22 C -0.15 0.70 7.14 31.21 0.22 0.92 16 23 C 0.09 -0.25 5.28 31.21 0.16 -0.09 16 24 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 25 O -0.56 0.88 13.10 -148.98 -1.95 -1.07 16 26 C -0.14 -0.49 6.60 31.12 0.21 -0.28 16 27 C -0.07 0.04 9.52 22.49 0.21 0.25 16 28 C -0.12 0.12 9.41 22.44 0.21 0.33 16 29 C -0.11 -0.13 9.43 22.49 0.21 0.08 16 30 C -0.12 -0.16 8.65 22.24 0.19 0.03 16 31 H 0.40 -2.34 8.74 -74.06 -0.65 -2.99 16 32 H 0.10 -0.49 7.96 -2.39 -0.02 -0.51 16 33 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 34 H -0.30 -1.75 7.04 99.48 0.70 -1.04 16 35 H 0.14 -0.13 8.06 -2.91 -0.02 -0.16 16 36 H 0.15 -0.70 6.19 -2.91 -0.02 -0.72 16 37 H 0.15 -0.14 6.19 -2.91 -0.02 -0.15 16 38 H 0.12 1.05 7.64 -2.91 -0.02 1.02 16 39 H 0.41 -1.25 6.69 -92.71 -0.62 -1.87 16 40 H 0.14 -0.19 6.38 -2.91 -0.02 -0.21 16 41 H 0.14 -0.21 8.06 -2.91 -0.02 -0.24 16 42 H 0.14 0.03 8.06 -2.91 -0.02 0.00 16 43 H 0.13 0.37 8.06 -2.91 -0.02 0.35 16 44 H 0.11 0.74 6.74 -2.91 -0.02 0.72 16 45 H 0.10 -0.74 8.09 -2.39 -0.02 -0.76 16 46 H 0.12 -0.83 7.88 -2.39 -0.02 -0.85 16 47 H 0.40 -4.19 9.12 -74.06 -0.68 -4.87 16 48 H 0.11 0.07 6.09 -2.39 -0.01 0.05 16 49 H 0.05 0.59 7.30 -2.39 -0.02 0.58 16 50 H 0.15 -1.03 6.40 -2.91 -0.02 -1.05 16 51 H 0.16 -0.99 6.19 -2.91 -0.02 -1.01 16 52 H 0.15 -0.37 6.19 -2.91 -0.02 -0.39 16 53 H 0.14 -0.23 4.85 -2.91 -0.01 -0.25 16 Total: 0.00 -27.25 427.01 -0.87 -28.12 By element: Atomic # 1 Polarization: -14.04 SS G_CDS: -0.90 Total: -14.94 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 3.52 Total: 3.21 kcal Atomic # 7 Polarization: -1.69 SS G_CDS: -1.62 Total: -3.30 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -3.92 Total: -13.85 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: 2.05 Total: 0.77 kcal Total: -27.25 -0.87 -28.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_13158362.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.359 kcal (2) G-P(sol) polarization free energy of solvation -27.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds