Wall clock time and date at job start Sat Mar 6 2021 23:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86298 * 109.47349 * 2 1 4 4 C 1.50706 * 109.46605 * 240.00044 * 2 1 3 5 5 C 1.34192 * 126.53842 * 104.96077 * 4 2 1 6 6 N 1.36869 * 109.96522 * 180.02562 * 5 4 2 7 7 C 1.37403 * 109.98144 * 359.97438 * 6 5 4 8 8 C 1.39324 * 133.25540 * 180.02562 * 7 6 5 9 9 C 1.36348 * 120.24077 * 179.97438 * 8 7 6 10 10 C 1.40168 * 120.66834 * 359.76859 * 9 8 7 11 11 C 1.47654 * 119.97788 * 180.28165 * 10 9 8 12 12 O 1.21578 * 120.00188 * 180.23062 * 11 10 9 13 13 N 1.34774 * 119.99886 * 0.22906 * 11 10 9 14 14 C 1.46500 * 120.00214 * 175.02610 * 13 11 10 15 15 C 1.50706 * 112.84644 * 65.09467 * 14 13 11 16 16 C 1.38238 * 119.99416 * 197.56438 * 15 14 13 17 17 C 1.38243 * 119.99382 * 179.78803 * 16 15 14 18 18 C 1.38233 * 119.99864 * 0.46592 * 17 16 15 19 19 C 1.38238 * 120.00177 * 359.76702 * 18 17 16 20 20 C 1.38229 * 119.99870 * 0.02562 * 19 18 17 21 21 C 1.53780 * 113.61513 * 293.89604 * 14 13 11 22 22 C 1.53771 * 87.08132 * 270.88370 * 21 14 13 23 23 H 1.09006 * 113.61284 * 220.01669 * 22 21 14 24 24 O 1.42904 * 113.61895 * 89.20361 * 22 21 14 25 25 C 1.53784 * 113.61770 * 196.28949 * 14 13 11 26 26 C 1.39193 * 120.05077 * 0.51324 * 10 9 8 27 27 C 1.39228 * 119.39072 * 359.46891 * 26 10 9 28 28 H 0.96698 * 113.99693 * 299.99920 * 1 2 3 29 29 H 1.08996 * 109.47010 * 120.00371 * 2 1 3 30 30 H 1.48495 * 109.99974 * 178.68579 * 3 2 1 31 31 H 1.48500 * 109.99802 * 300.00401 * 3 2 1 32 32 H 1.07997 * 125.01555 * 0.05173 * 5 4 2 33 33 H 0.96995 * 125.00410 * 180.02562 * 6 5 4 34 34 H 1.08006 * 119.88197 * 359.97438 * 8 7 6 35 35 H 1.08000 * 119.66800 * 179.97438 * 9 8 7 36 36 H 0.97004 * 120.00408 * 355.03006 * 13 11 10 37 37 H 1.07995 * 120.00395 * 0.02562 * 16 15 14 38 38 H 1.07999 * 119.99652 * 180.25239 * 17 16 15 39 39 H 1.08002 * 119.99815 * 179.78670 * 18 17 16 40 40 H 1.08005 * 119.99723 * 180.02562 * 19 18 17 41 41 H 1.08001 * 119.99793 * 179.97438 * 20 19 18 42 42 H 1.08997 * 113.60977 * 25.43412 * 21 14 13 43 43 H 1.09001 * 113.61069 * 156.33155 * 21 14 13 44 44 H 0.96690 * 114.00384 * 179.97438 * 24 22 21 45 45 H 1.08993 * 113.61836 * 203.67025 * 25 14 13 46 46 H 1.09007 * 113.60908 * 334.56989 * 25 14 13 47 47 H 1.08002 * 120.30284 * 179.74414 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.4599 -0.1386 -2.3234 6 7 2.8016 -1.1004 -3.2353 7 6 2.4951 -2.3455 -2.7415 8 6 2.6343 -3.6351 -3.2502 9 6 2.2320 -4.7105 -2.5149 10 6 1.6785 -4.5373 -1.2388 11 6 1.2536 -5.7131 -0.4532 12 8 0.7696 -5.5632 0.6520 13 7 1.4022 -6.9525 -0.9613 14 6 1.0828 -8.1236 -0.1411 15 6 -0.3802 -8.2105 0.2103 16 6 -0.7938 -9.0195 1.2521 17 6 -2.1353 -9.0958 1.5772 18 6 -3.0640 -8.3706 0.8545 19 6 -2.6507 -7.5652 -0.1904 20 6 -1.3089 -7.4856 -0.5127 21 6 2.0181 -8.3038 1.0662 22 6 2.9242 -9.1327 0.1408 23 1 3.3528 -10.0118 0.6222 24 8 3.8971 -8.3525 -0.5569 25 6 1.6634 -9.4374 -0.6903 26 6 1.5247 -3.2575 -0.7135 27 6 1.9353 -2.1578 -1.4622 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5139 0.8899 30 1 3.5347 1.7702 0.0320 31 1 1.5615 2.4678 -1.2085 32 1 2.5962 0.9236 -2.4626 33 1 3.2017 -0.9284 -4.1019 34 1 3.0626 -3.7835 -4.2306 35 1 2.3438 -5.7060 -2.9184 36 1 1.7207 -7.0693 -1.8700 37 1 -0.0687 -9.5890 1.8144 38 1 -2.4581 -9.7248 2.3937 39 1 -4.1124 -8.4328 1.1063 40 1 -3.3763 -6.9983 -0.7548 41 1 -0.9861 -6.8568 -1.3293 42 1 2.4750 -7.3748 1.4069 43 1 1.5768 -8.8823 1.8779 44 1 4.4703 -8.8683 -1.1402 45 1 1.1254 -10.3252 -0.3581 46 1 1.8343 -9.4229 -1.7668 47 1 1.0949 -3.1192 0.2676 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_13287722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:49:44 Heat of formation + Delta-G solvation = 17.143041 kcal Electronic energy + Delta-G solvation = -32834.850962 eV Core-core repulsion = 28529.936963 eV Total energy + Delta-G solvation = -4304.913998 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.61133 -42.05007 -39.98703 -39.23239 -37.88513 -37.47027 -36.21115 -34.13907 -33.46305 -31.85044 -31.65079 -30.90320 -30.50027 -27.00726 -26.50000 -26.12020 -24.61520 -23.57538 -23.46904 -22.48258 -21.65614 -20.67417 -20.24960 -19.18071 -18.74076 -18.47405 -18.35706 -17.84429 -17.40547 -16.98946 -16.42246 -16.13998 -15.97493 -15.71306 -15.56986 -15.40206 -15.21115 -15.11108 -14.96520 -14.86632 -14.68263 -14.38746 -14.19835 -14.01417 -13.82434 -13.62133 -13.53721 -13.23970 -12.91669 -12.76681 -12.66015 -12.32710 -12.21482 -12.08929 -11.94113 -11.91178 -11.43811 -10.99889 -10.91670 -10.91439 -10.22382 -10.09015 -9.83663 -9.57303 -9.44017 -8.94341 -4.94213 -0.22882 0.09499 0.40952 0.48201 1.31426 1.32716 1.70209 1.83167 1.92109 1.95724 2.03768 2.79044 2.81898 3.13943 3.44331 3.47898 3.56560 3.63074 3.64904 3.68349 3.73283 3.85349 3.97401 4.05028 4.07166 4.10249 4.17014 4.22775 4.31218 4.37406 4.42841 4.48736 4.59157 4.62958 4.69634 4.71489 4.82377 4.87400 4.91432 4.96561 4.98796 5.06399 5.13924 5.17224 5.26062 5.35271 5.42558 5.45114 5.54962 5.60350 5.75322 5.86065 6.08826 6.41068 6.52371 6.92250 6.94086 7.23226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.570 6.570 2 C -0.061 4.061 3 Si 0.792 3.208 4 C -0.181 4.181 5 C 0.059 3.941 6 N -0.573 5.573 7 C 0.110 3.890 8 C -0.126 4.126 9 C -0.062 4.062 10 C -0.175 4.175 11 C 0.566 3.434 12 O -0.570 6.570 13 N -0.683 5.683 14 C 0.189 3.811 15 C -0.079 4.079 16 C -0.123 4.123 17 C -0.125 4.125 18 C -0.134 4.134 19 C -0.135 4.135 20 C -0.119 4.119 21 C -0.142 4.142 22 C 0.090 3.910 23 H 0.095 0.905 24 O -0.564 6.564 25 C -0.146 4.146 26 C -0.017 4.017 27 C -0.129 4.129 28 H 0.398 0.602 29 H 0.067 0.933 30 H -0.286 1.286 31 H -0.279 1.279 32 H 0.189 0.811 33 H 0.438 0.562 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.413 0.587 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.126 0.874 41 H 0.108 0.892 42 H 0.049 0.951 43 H 0.116 0.884 44 H 0.398 0.602 45 H 0.119 0.881 46 H 0.097 0.903 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.433 -1.730 -3.706 5.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.379 6.379 2 C -0.170 4.170 3 Si 0.695 3.305 4 C -0.188 4.188 5 C -0.069 4.069 6 N -0.177 5.177 7 C 0.000 4.000 8 C -0.146 4.146 9 C -0.081 4.081 10 C -0.179 4.179 11 C 0.355 3.645 12 O -0.450 6.450 13 N -0.335 5.335 14 C 0.102 3.898 15 C -0.080 4.080 16 C -0.141 4.141 17 C -0.143 4.143 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.137 4.137 21 C -0.180 4.180 22 C 0.030 3.970 23 H 0.113 0.887 24 O -0.372 6.372 25 C -0.184 4.184 26 C -0.036 4.036 27 C -0.134 4.134 28 H 0.249 0.751 29 H 0.085 0.915 30 H -0.213 1.213 31 H -0.205 1.205 32 H 0.206 0.794 33 H 0.279 0.721 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.251 0.749 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.144 0.856 41 H 0.126 0.874 42 H 0.068 0.932 43 H 0.134 0.866 44 H 0.249 0.751 45 H 0.137 0.863 46 H 0.116 0.884 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.464 -0.831 -3.710 5.143 hybrid contribution 0.306 -0.534 -0.990 1.165 sum 3.770 -1.365 -4.700 6.178 Atomic orbital electron populations 1.86478 1.18048 1.82566 1.50808 1.24464 0.85215 1.11787 0.95501 0.93743 0.77287 0.73806 0.85711 1.20109 1.09339 0.91484 0.97855 1.21881 1.00921 0.94995 0.89078 1.41669 1.54241 1.03281 1.18473 1.18685 0.99893 0.87708 0.93690 1.20053 1.04601 0.87685 1.02252 1.20892 0.95547 1.00017 0.91676 1.19660 1.08502 0.92375 0.97392 1.18282 0.77186 0.83617 0.85461 1.90772 1.45449 1.86574 1.22215 1.45249 1.67303 1.03512 1.17429 1.20034 0.89445 0.86942 0.93357 1.19960 0.94643 0.97080 0.96296 1.21204 0.96648 0.99434 0.96785 1.21443 0.93109 0.99647 1.00066 1.21428 1.00722 0.97120 0.95911 1.21356 0.95989 0.99488 0.98463 1.20971 0.93473 0.99118 1.00157 1.23609 0.96329 1.00938 0.97100 1.22706 0.87959 0.93569 0.92718 0.88703 1.86494 1.49004 1.38766 1.62930 1.24048 0.96931 0.95102 1.02330 1.20568 0.94209 0.90413 0.98458 1.19172 1.05430 0.93205 0.95583 0.75138 0.91457 1.21287 1.20505 0.79422 0.72122 0.81958 0.82233 0.74853 0.83985 0.83906 0.84586 0.85606 0.87436 0.93223 0.86555 0.75134 0.86281 0.88407 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -3.37 12.86 -148.98 -1.92 -5.29 16 2 C -0.06 -0.29 3.05 71.24 0.22 -0.07 16 3 Si 0.79 -1.14 30.80 68.60 2.11 0.97 16 4 C -0.18 -1.60 5.61 -18.61 -0.10 -1.70 16 5 C 0.06 0.23 10.43 82.98 0.87 1.10 16 6 N -0.57 -0.62 6.05 -187.48 -1.13 -1.75 16 7 C 0.11 0.62 7.27 39.18 0.28 0.90 16 8 C -0.13 -0.13 10.00 22.09 0.22 0.09 16 9 C -0.06 -0.13 9.46 22.30 0.21 0.08 16 10 C -0.17 -1.70 5.87 -20.09 -0.12 -1.81 16 11 C 0.57 6.59 6.34 86.73 0.55 7.14 16 12 O -0.57 -11.34 14.83 -3.96 -0.06 -11.39 16 13 N -0.68 -2.85 3.76 -426.93 -1.60 -4.45 16 14 C 0.19 0.64 0.92 3.39 0.00 0.64 16 15 C -0.08 -0.56 4.51 -19.86 -0.09 -0.65 16 16 C -0.12 -0.59 8.94 22.27 0.20 -0.39 16 17 C -0.12 -0.58 10.05 22.27 0.22 -0.35 16 18 C -0.13 -0.82 10.05 22.27 0.22 -0.59 16 19 C -0.13 -1.13 10.05 22.27 0.22 -0.91 16 20 C -0.12 -1.14 8.64 22.27 0.19 -0.94 16 21 C -0.14 -0.57 6.66 31.12 0.21 -0.36 16 22 C 0.09 -0.24 5.28 31.21 0.16 -0.08 16 23 H 0.10 -0.63 8.14 -2.38 -0.02 -0.65 16 24 O -0.56 0.91 13.10 -148.98 -1.95 -1.05 16 25 C -0.15 0.60 7.15 31.21 0.22 0.83 16 26 C -0.02 -0.23 9.64 22.74 0.22 -0.01 16 27 C -0.13 -1.46 6.34 -20.21 -0.13 -1.59 16 28 H 0.40 -1.90 8.74 -74.06 -0.65 -2.55 16 29 H 0.07 0.28 7.96 -2.39 -0.02 0.26 16 30 H -0.29 -0.99 7.11 99.48 0.71 -0.28 16 31 H -0.28 -0.74 7.04 99.48 0.70 -0.04 16 32 H 0.19 -0.17 6.30 -2.91 -0.02 -0.19 16 33 H 0.44 -2.85 8.96 -92.71 -0.83 -3.68 16 34 H 0.16 -1.02 8.06 -2.91 -0.02 -1.04 16 35 H 0.16 -0.81 6.37 -2.91 -0.02 -0.83 16 36 H 0.41 -0.67 6.67 -92.71 -0.62 -1.29 16 37 H 0.14 -0.05 6.29 -2.91 -0.02 -0.07 16 38 H 0.14 -0.05 8.06 -2.91 -0.02 -0.07 16 39 H 0.14 0.26 8.06 -2.91 -0.02 0.24 16 40 H 0.13 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.11 1.04 6.89 -2.91 -0.02 1.02 16 42 H 0.05 0.59 7.57 -2.39 -0.02 0.57 16 43 H 0.12 0.12 6.02 -2.39 -0.01 0.10 16 44 H 0.40 -4.26 9.12 -74.06 -0.68 -4.93 16 45 H 0.12 -0.74 7.93 -2.39 -0.02 -0.76 16 46 H 0.10 -0.68 8.09 -2.38 -0.02 -0.70 16 47 H 0.11 1.91 7.64 -2.91 -0.02 1.89 16 Total: 0.00 -31.55 386.74 -2.43 -33.98 By element: Atomic # 1 Polarization: -10.67 SS G_CDS: -1.67 Total: -12.33 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 3.79 Total: 1.31 kcal Atomic # 7 Polarization: -3.47 SS G_CDS: -2.74 Total: -6.21 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -3.93 Total: -17.73 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.11 Total: 0.97 kcal Total: -31.55 -2.43 -33.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_13287722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.123 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds