Wall clock time and date at job start Sat Mar 6 2021 23:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.46923 * 2 1 4 4 C 1.50705 * 109.47142 * 240.00076 * 2 1 3 5 5 C 1.38562 * 120.32065 * 119.71827 * 4 2 1 6 6 N 1.31529 * 120.89832 * 179.72919 * 5 4 2 7 7 C 1.32715 * 121.64298 * 0.58331 * 6 5 4 8 8 C 1.48173 * 119.72138 * 179.70610 * 7 6 5 9 9 O 1.21518 * 119.99433 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00081 * 359.97438 * 8 7 6 11 11 C 1.46503 * 119.99970 * 175.05103 * 10 8 7 12 12 C 1.50698 * 112.85012 * 291.21633 * 11 10 8 13 13 C 1.38239 * 119.99767 * 346.63159 * 12 11 10 14 14 C 1.38235 * 119.99801 * 179.78608 * 13 12 11 15 15 C 1.38235 * 120.00171 * 0.43846 * 14 13 12 16 16 C 1.38235 * 119.99704 * 359.81535 * 15 14 13 17 17 C 1.38227 * 120.00339 * 166.89932 * 12 11 10 18 18 C 1.53780 * 113.61178 * 159.91348 * 11 10 8 19 19 C 1.53779 * 87.07759 * 270.87995 * 18 11 10 20 20 H 1.09002 * 113.61499 * 220.01872 * 19 18 11 21 21 O 1.42901 * 113.68950 * 89.13279 * 19 18 11 22 22 C 1.53774 * 113.61404 * 62.41425 * 11 10 8 23 23 C 1.39316 * 120.55359 * 359.68338 * 7 6 5 24 24 C 1.38585 * 119.05825 * 0.02562 * 23 7 6 25 25 H 0.96700 * 114.00421 * 60.00522 * 1 2 3 26 26 H 1.08995 * 109.47165 * 120.00227 * 2 1 3 27 27 H 1.48495 * 110.00161 * 60.00335 * 3 2 1 28 28 H 1.48505 * 109.99921 * 181.32017 * 3 2 1 29 29 H 1.07997 * 119.54994 * 0.02562 * 5 4 2 30 30 H 0.97000 * 119.99681 * 355.04988 * 10 8 7 31 31 H 1.07999 * 120.00099 * 0.02562 * 13 12 11 32 32 H 1.07998 * 120.00228 * 180.27737 * 14 13 12 33 33 H 1.08003 * 120.00328 * 179.83432 * 15 14 13 34 34 H 1.08002 * 120.00342 * 179.97438 * 16 15 14 35 35 H 1.08008 * 119.99669 * 359.97438 * 17 12 11 36 36 H 1.08992 * 113.61809 * 25.43358 * 18 11 10 37 37 H 1.09007 * 113.61182 * 156.33991 * 18 11 10 38 38 H 0.96706 * 114.00063 * 82.46028 * 21 19 18 39 39 H 1.08998 * 113.61705 * 203.66406 * 22 11 10 40 40 H 1.09000 * 113.61760 * 334.56681 * 22 11 10 41 41 H 1.08003 * 120.46835 * 180.02562 * 23 7 6 42 42 H 1.08004 * 120.75560 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7235 -0.0417 -2.1499 6 7 3.1725 -0.6522 -3.2249 7 6 2.8788 -1.9212 -3.4788 8 6 3.4023 -2.5650 -4.7065 9 8 3.1368 -3.7269 -4.9436 10 7 4.1728 -1.8620 -5.5599 11 6 4.7794 -2.5263 -6.7162 12 6 5.8548 -3.5085 -6.3292 13 6 6.3644 -3.5046 -5.0442 14 6 7.3477 -4.4085 -4.6879 15 6 7.8279 -5.3103 -5.6191 16 6 7.3220 -5.3107 -6.9055 17 6 6.3355 -4.4097 -7.2606 18 6 5.2011 -1.5565 -7.8326 19 6 3.7859 -1.7287 -8.4089 20 1 3.7624 -1.7947 -9.4967 21 8 2.8368 -0.7954 -7.8891 22 6 3.7519 -3.0969 -7.7079 23 6 2.0828 -2.6533 -2.6006 24 6 1.6005 -2.0375 -1.4566 25 1 -0.3934 0.4416 -0.7651 26 1 1.7923 -0.5138 0.8899 27 1 1.5615 2.4679 1.2085 28 1 3.5345 1.7703 -0.0322 29 1 2.9797 0.9934 -1.9790 30 1 4.3256 -0.9162 -5.4086 31 1 5.9916 -2.7979 -4.3175 32 1 7.7427 -4.4084 -3.6827 33 1 8.5980 -6.0147 -5.3415 34 1 7.6973 -6.0149 -7.6332 35 1 5.9401 -4.4101 -8.2657 36 1 5.4086 -0.5467 -7.4785 37 1 5.9864 -1.9493 -8.4786 38 1 2.8534 0.0671 -8.3261 39 1 4.1409 -3.9108 -8.3197 40 1 2.7893 -3.3308 -7.2531 41 1 1.8449 -3.6862 -2.8084 42 1 0.9808 -2.5790 -0.7573 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12891110_13287726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:49:49 Heat of formation + Delta-G solvation = -4.254273 kcal Electronic energy + Delta-G solvation = -27815.369977 eV Core-core repulsion = 23921.518022 eV Total energy + Delta-G solvation = -3893.851956 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22763 -41.43271 -39.52150 -39.14259 -37.92687 -36.22341 -34.37142 -33.38689 -32.89545 -31.66021 -31.59460 -27.97905 -26.98550 -25.76884 -24.98764 -23.92604 -23.37661 -22.47114 -21.78298 -20.18036 -19.29364 -18.67151 -18.54433 -17.91512 -17.56141 -16.77463 -16.70833 -16.44305 -16.32054 -16.06009 -15.85898 -15.50887 -15.39311 -15.20231 -14.73308 -14.43679 -14.37173 -14.36360 -14.13850 -13.91476 -13.57975 -13.49217 -13.25486 -12.90582 -12.63229 -12.36576 -12.18895 -12.14904 -11.87230 -11.50353 -11.10310 -11.05384 -10.99496 -10.67541 -10.56491 -10.24628 -9.94486 -9.74991 -9.50813 -5.17675 -0.52698 0.08575 0.47815 0.57038 1.10370 1.48675 1.72629 1.84836 1.99736 2.75514 2.84289 2.96483 3.05522 3.25855 3.42172 3.44514 3.59576 3.63247 3.71197 3.73929 3.84262 3.95966 4.08360 4.15243 4.17714 4.26221 4.30876 4.32587 4.55199 4.58606 4.64360 4.65267 4.73154 4.82234 4.89196 4.96556 4.98462 5.12013 5.12300 5.18296 5.38296 5.48112 5.62385 5.69205 5.81424 6.14355 6.37673 6.41701 6.64459 6.70042 7.26332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.067 4.067 3 Si 0.688 3.312 4 C -0.152 4.152 5 C 0.102 3.898 6 N -0.451 5.451 7 C 0.084 3.916 8 C 0.577 3.423 9 O -0.518 6.518 10 N -0.680 5.680 11 C 0.197 3.803 12 C -0.073 4.073 13 C -0.105 4.105 14 C -0.118 4.118 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.162 4.162 19 C 0.079 3.921 20 H 0.074 0.926 21 O -0.544 6.544 22 C -0.130 4.130 23 C -0.109 4.109 24 C -0.053 4.053 25 H 0.381 0.619 26 H 0.120 0.880 27 H -0.249 1.249 28 H -0.253 1.253 29 H 0.163 0.837 30 H 0.414 0.586 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.380 0.620 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 4.101 -2.560 4.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.178 4.178 3 Si 0.589 3.411 4 C -0.154 4.154 5 C -0.057 4.057 6 N -0.162 5.162 7 C -0.055 4.055 8 C 0.362 3.638 9 O -0.393 6.393 10 N -0.331 5.331 11 C 0.109 3.891 12 C -0.075 4.075 13 C -0.123 4.123 14 C -0.136 4.136 15 C -0.139 4.139 16 C -0.135 4.135 17 C -0.130 4.130 18 C -0.200 4.200 19 C 0.020 3.980 20 H 0.092 0.908 21 O -0.349 6.349 22 C -0.168 4.168 23 C -0.130 4.130 24 C -0.079 4.079 25 H 0.229 0.771 26 H 0.138 0.862 27 H -0.174 1.174 28 H -0.177 1.177 29 H 0.180 0.820 30 H 0.251 0.749 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.228 0.772 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.169 0.831 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.596 3.478 -1.980 4.308 hybrid contribution -0.153 -0.189 0.643 0.687 sum 1.443 3.289 -1.338 3.833 Atomic orbital electron populations 1.86531 1.16613 1.81676 1.49349 1.25045 0.85585 1.10404 0.96764 0.94751 0.81152 0.77352 0.87845 1.21646 0.99301 0.96057 0.98399 1.22612 0.94154 0.99614 0.89328 1.67528 1.20200 1.09111 1.19381 1.21202 0.97727 0.90657 0.95873 1.17764 0.78370 0.85668 0.82047 1.90820 1.57607 1.16204 1.74665 1.45255 1.49582 1.13547 1.24711 1.19868 0.91691 0.92467 0.85042 1.19753 0.96627 0.96774 0.94319 1.20918 0.96680 0.98872 0.95817 1.21146 0.97164 0.95732 0.99526 1.21185 1.00115 0.98929 0.93685 1.21129 0.96976 0.98767 0.96595 1.20895 0.97440 0.95493 0.99219 1.24041 0.98913 1.00121 0.96951 1.22722 0.87709 0.90965 0.96622 0.90781 1.86537 1.58530 1.26292 1.63556 1.23510 1.01047 0.95481 0.96763 1.22224 0.95335 1.02093 0.93307 1.21539 0.96406 0.93643 0.96306 0.77118 0.86246 1.17364 1.17749 0.82012 0.74877 0.86738 0.86204 0.86038 0.85826 0.85868 0.89799 0.87511 0.77211 0.87574 0.88993 0.83051 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.58 12.78 -35.23 -0.45 0.13 16 2 C -0.07 0.11 2.83 36.01 0.10 0.21 16 3 Si 0.69 -1.66 29.82 -169.99 -5.07 -6.73 16 4 C -0.15 0.11 5.40 -104.36 -0.56 -0.46 16 5 C 0.10 -0.04 9.84 -17.56 -0.17 -0.21 16 6 N -0.45 -0.64 9.55 -9.79 -0.09 -0.73 16 7 C 0.08 0.21 6.75 -83.00 -0.56 -0.35 16 8 C 0.58 2.17 6.30 -12.18 -0.08 2.09 16 9 O -0.52 -3.37 14.74 5.35 0.08 -3.29 16 10 N -0.68 -1.16 3.74 -48.76 -0.18 -1.34 16 11 C 0.20 0.23 0.94 -132.16 -0.12 0.10 16 12 C -0.07 -0.17 4.89 -104.63 -0.51 -0.68 16 13 C -0.10 -0.33 8.98 -39.58 -0.36 -0.68 16 14 C -0.12 -0.30 10.05 -39.58 -0.40 -0.69 16 15 C -0.12 -0.22 10.05 -39.58 -0.40 -0.62 16 16 C -0.12 -0.17 10.05 -39.58 -0.40 -0.56 16 17 C -0.11 -0.16 8.71 -39.59 -0.34 -0.51 16 18 C -0.16 0.23 7.13 -25.92 -0.18 0.05 16 19 C 0.08 -0.07 5.27 -25.92 -0.14 -0.21 16 20 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 21 O -0.54 0.07 13.09 -35.23 -0.46 -0.39 16 22 C -0.13 -0.17 6.55 -25.93 -0.17 -0.34 16 23 C -0.11 -0.17 9.63 -39.05 -0.38 -0.55 16 24 C -0.05 0.00 9.76 -39.31 -0.38 -0.38 16 25 H 0.38 -1.83 8.70 45.56 0.40 -1.43 16 26 H 0.12 -0.17 7.96 -51.93 -0.41 -0.58 16 27 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 28 H -0.25 0.06 7.11 56.52 0.40 0.46 16 29 H 0.16 -0.46 4.89 -52.49 -0.26 -0.71 16 30 H 0.41 0.25 8.02 -40.82 -0.33 -0.08 16 31 H 0.11 0.35 6.73 -52.49 -0.35 0.00 16 32 H 0.12 0.12 8.06 -52.49 -0.42 -0.30 16 33 H 0.12 0.00 8.06 -52.48 -0.42 -0.42 16 34 H 0.12 -0.07 8.06 -52.49 -0.42 -0.50 16 35 H 0.12 -0.09 6.55 -52.48 -0.34 -0.43 16 36 H 0.08 -0.17 8.10 -51.93 -0.42 -0.59 16 37 H 0.11 -0.25 7.79 -51.92 -0.40 -0.66 16 38 H 0.38 -1.62 9.12 45.56 0.42 -1.20 16 39 H 0.11 -0.02 6.22 -51.93 -0.32 -0.34 16 40 H 0.09 0.39 6.95 -51.93 -0.36 0.03 16 41 H 0.15 0.22 7.64 -52.48 -0.40 -0.18 16 42 H 0.15 -0.19 8.06 -52.48 -0.42 -0.61 16 LS Contribution 350.13 15.07 5.28 5.28 Total: 0.00 -8.80 350.13 -10.06 -18.86 By element: Atomic # 1 Polarization: -3.88 SS G_CDS: -4.10 Total: -7.99 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -5.05 Total: -3.79 kcal Atomic # 7 Polarization: -1.80 SS G_CDS: -0.28 Total: -2.07 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: -0.83 Total: -3.55 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: -5.07 Total: -6.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -8.80 -10.06 -18.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_13287726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.602 kcal (2) G-P(sol) polarization free energy of solvation -8.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds