Wall clock time and date at job start Sat Mar 6 2021 23:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.46923 * 2 1 4 4 C 1.50705 * 109.47142 * 240.00076 * 2 1 3 5 5 C 1.38562 * 120.32065 * 119.71827 * 4 2 1 6 6 N 1.31529 * 120.89832 * 179.72919 * 5 4 2 7 7 C 1.32715 * 121.64298 * 0.58331 * 6 5 4 8 8 C 1.48173 * 119.72138 * 179.70610 * 7 6 5 9 9 O 1.21518 * 119.99433 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00081 * 359.97438 * 8 7 6 11 11 C 1.46503 * 119.99970 * 175.05103 * 10 8 7 12 12 C 1.50698 * 112.85012 * 291.21633 * 11 10 8 13 13 C 1.38239 * 119.99767 * 346.63159 * 12 11 10 14 14 C 1.38235 * 119.99801 * 179.78608 * 13 12 11 15 15 C 1.38235 * 120.00171 * 0.43846 * 14 13 12 16 16 C 1.38235 * 119.99704 * 359.81535 * 15 14 13 17 17 C 1.38227 * 120.00339 * 166.89932 * 12 11 10 18 18 C 1.53780 * 113.61178 * 159.91348 * 11 10 8 19 19 C 1.53779 * 87.07759 * 270.87995 * 18 11 10 20 20 H 1.09002 * 113.61499 * 220.01872 * 19 18 11 21 21 O 1.42901 * 113.68950 * 89.13279 * 19 18 11 22 22 C 1.53774 * 113.61404 * 62.41425 * 11 10 8 23 23 C 1.39316 * 120.55359 * 359.68338 * 7 6 5 24 24 C 1.38585 * 119.05825 * 0.02562 * 23 7 6 25 25 H 0.96700 * 114.00421 * 60.00522 * 1 2 3 26 26 H 1.08995 * 109.47165 * 120.00227 * 2 1 3 27 27 H 1.48495 * 110.00161 * 60.00335 * 3 2 1 28 28 H 1.48505 * 109.99921 * 181.32017 * 3 2 1 29 29 H 1.07997 * 119.54994 * 0.02562 * 5 4 2 30 30 H 0.97000 * 119.99681 * 355.04988 * 10 8 7 31 31 H 1.07999 * 120.00099 * 0.02562 * 13 12 11 32 32 H 1.07998 * 120.00228 * 180.27737 * 14 13 12 33 33 H 1.08003 * 120.00328 * 179.83432 * 15 14 13 34 34 H 1.08002 * 120.00342 * 179.97438 * 16 15 14 35 35 H 1.08008 * 119.99669 * 359.97438 * 17 12 11 36 36 H 1.08992 * 113.61809 * 25.43358 * 18 11 10 37 37 H 1.09007 * 113.61182 * 156.33991 * 18 11 10 38 38 H 0.96706 * 114.00063 * 82.46028 * 21 19 18 39 39 H 1.08998 * 113.61705 * 203.66406 * 22 11 10 40 40 H 1.09000 * 113.61760 * 334.56681 * 22 11 10 41 41 H 1.08003 * 120.46835 * 180.02562 * 23 7 6 42 42 H 1.08004 * 120.75560 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7235 -0.0417 -2.1499 6 7 3.1725 -0.6522 -3.2249 7 6 2.8788 -1.9212 -3.4788 8 6 3.4023 -2.5650 -4.7065 9 8 3.1368 -3.7269 -4.9436 10 7 4.1728 -1.8620 -5.5599 11 6 4.7794 -2.5263 -6.7162 12 6 5.8548 -3.5085 -6.3292 13 6 6.3644 -3.5046 -5.0442 14 6 7.3477 -4.4085 -4.6879 15 6 7.8279 -5.3103 -5.6191 16 6 7.3220 -5.3107 -6.9055 17 6 6.3355 -4.4097 -7.2606 18 6 5.2011 -1.5565 -7.8326 19 6 3.7859 -1.7287 -8.4089 20 1 3.7624 -1.7947 -9.4967 21 8 2.8368 -0.7954 -7.8891 22 6 3.7519 -3.0969 -7.7079 23 6 2.0828 -2.6533 -2.6006 24 6 1.6005 -2.0375 -1.4566 25 1 -0.3934 0.4416 -0.7651 26 1 1.7923 -0.5138 0.8899 27 1 1.5615 2.4679 1.2085 28 1 3.5345 1.7703 -0.0322 29 1 2.9797 0.9934 -1.9790 30 1 4.3256 -0.9162 -5.4086 31 1 5.9916 -2.7979 -4.3175 32 1 7.7427 -4.4084 -3.6827 33 1 8.5980 -6.0147 -5.3415 34 1 7.6973 -6.0149 -7.6332 35 1 5.9401 -4.4101 -8.2657 36 1 5.4086 -0.5467 -7.4785 37 1 5.9864 -1.9493 -8.4786 38 1 2.8534 0.0671 -8.3261 39 1 4.1409 -3.9108 -8.3197 40 1 2.7893 -3.3308 -7.2531 41 1 1.8449 -3.6862 -2.8084 42 1 0.9808 -2.5790 -0.7573 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_13287726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:49:48 Heat of formation + Delta-G solvation = -6.083435 kcal Electronic energy + Delta-G solvation = -27815.449296 eV Core-core repulsion = 23921.518022 eV Total energy + Delta-G solvation = -3893.931274 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.31805 -41.46505 -39.68374 -39.19759 -37.86751 -36.24647 -34.46741 -33.45627 -32.93877 -31.76112 -31.67967 -28.00623 -26.96618 -25.79282 -25.01937 -23.97988 -23.46734 -22.53198 -21.86009 -20.26522 -19.39006 -18.68038 -18.53238 -17.92042 -17.57224 -16.83489 -16.68865 -16.49516 -16.34054 -16.17102 -15.92437 -15.61418 -15.38776 -15.28309 -14.76640 -14.49999 -14.43738 -14.36969 -14.20949 -13.99004 -13.59533 -13.52337 -13.21823 -12.96437 -12.56358 -12.34534 -12.26390 -12.17182 -11.96414 -11.60172 -11.20824 -11.09559 -10.95389 -10.68205 -10.60529 -10.30322 -10.04647 -9.87647 -9.61365 -5.01153 -0.61407 0.05123 0.36687 0.44052 1.23764 1.55345 1.63307 1.89034 1.96214 2.65136 2.75139 2.91454 3.14711 3.40531 3.46249 3.49365 3.58181 3.63249 3.70076 3.75231 3.83451 3.92803 4.01174 4.07071 4.12260 4.21425 4.36738 4.39398 4.54528 4.57041 4.60217 4.68037 4.82558 4.84134 4.86662 4.95541 4.97081 5.00122 5.02981 5.11617 5.34850 5.38164 5.51620 5.57323 5.69871 6.04960 6.28578 6.60298 6.70015 6.93214 7.08246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.070 4.070 3 Si 0.775 3.225 4 C -0.142 4.142 5 C 0.101 3.899 6 N -0.458 5.458 7 C 0.065 3.935 8 C 0.572 3.428 9 O -0.556 6.556 10 N -0.669 5.669 11 C 0.185 3.815 12 C -0.082 4.082 13 C -0.125 4.125 14 C -0.133 4.133 15 C -0.132 4.132 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.148 4.148 19 C 0.087 3.913 20 H 0.097 0.903 21 O -0.565 6.565 22 C -0.138 4.138 23 C -0.119 4.119 24 C -0.053 4.053 25 H 0.397 0.603 26 H 0.119 0.881 27 H -0.294 1.294 28 H -0.278 1.278 29 H 0.188 0.812 30 H 0.418 0.582 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.398 0.602 39 H 0.118 0.882 40 H 0.056 0.944 41 H 0.145 0.855 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 5.114 -3.393 6.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.180 4.180 3 Si 0.680 3.320 4 C -0.145 4.145 5 C -0.059 4.059 6 N -0.169 5.169 7 C -0.073 4.073 8 C 0.358 3.642 9 O -0.434 6.434 10 N -0.319 5.319 11 C 0.098 3.902 12 C -0.083 4.083 13 C -0.143 4.143 14 C -0.151 4.151 15 C -0.150 4.150 16 C -0.140 4.140 17 C -0.137 4.137 18 C -0.185 4.185 19 C 0.028 3.972 20 H 0.114 0.886 21 O -0.374 6.374 22 C -0.176 4.176 23 C -0.140 4.140 24 C -0.079 4.079 25 H 0.248 0.752 26 H 0.136 0.864 27 H -0.222 1.222 28 H -0.204 1.204 29 H 0.204 0.796 30 H 0.257 0.743 31 H 0.123 0.877 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.111 0.889 37 H 0.140 0.860 38 H 0.248 0.752 39 H 0.136 0.864 40 H 0.074 0.926 41 H 0.162 0.838 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.945 4.512 -2.854 5.682 hybrid contribution -0.299 -0.480 0.985 1.135 sum 1.645 4.032 -1.870 4.739 Atomic orbital electron populations 1.86503 1.16657 1.82130 1.50565 1.25189 0.85640 1.11082 0.96104 0.93730 0.78149 0.74580 0.85533 1.21778 0.98526 0.95685 0.98486 1.23041 0.93589 1.00574 0.88678 1.67521 1.20525 1.08598 1.20224 1.21128 0.98802 0.91390 0.95951 1.18021 0.78261 0.85363 0.82563 1.90783 1.59242 1.17739 1.75637 1.45225 1.48627 1.13595 1.24502 1.20113 0.91546 0.93317 0.85268 1.19973 0.96798 0.97317 0.94251 1.20990 0.97572 0.99474 0.96306 1.21347 0.97386 0.96060 1.00273 1.21453 1.00590 0.99069 0.93904 1.21469 0.96712 0.98948 0.96879 1.21193 0.97351 0.95058 1.00084 1.24020 0.99017 0.99903 0.95606 1.22697 0.87648 0.89402 0.97465 0.88559 1.86497 1.58896 1.27551 1.64422 1.23579 0.99284 0.97415 0.97319 1.22255 0.95758 1.01980 0.93985 1.21702 0.96247 0.94101 0.95824 0.75232 0.86370 1.22169 1.20445 0.79600 0.74343 0.87677 0.85521 0.84468 0.83717 0.83723 0.88865 0.85984 0.75187 0.86387 0.92555 0.83759 0.82249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.65 12.78 -148.98 -1.90 -0.25 16 2 C -0.07 0.27 2.83 71.24 0.20 0.47 16 3 Si 0.78 -4.28 29.82 68.60 2.05 -2.23 16 4 C -0.14 0.24 5.40 -19.69 -0.11 0.13 16 5 C 0.10 -0.11 9.84 84.82 0.83 0.72 16 6 N -0.46 -1.62 9.55 -184.90 -1.77 -3.39 16 7 C 0.06 0.45 6.75 41.91 0.28 0.73 16 8 C 0.57 5.69 6.30 86.88 0.55 6.24 16 9 O -0.56 -9.00 14.74 -3.77 -0.06 -9.06 16 10 N -0.67 -3.32 3.74 -426.47 -1.60 -4.92 16 11 C 0.18 0.58 0.94 3.38 0.00 0.58 16 12 C -0.08 -0.47 4.89 -19.87 -0.10 -0.56 16 13 C -0.13 -1.01 8.98 22.27 0.20 -0.81 16 14 C -0.13 -0.85 10.05 22.27 0.22 -0.63 16 15 C -0.13 -0.54 10.05 22.27 0.22 -0.32 16 16 C -0.12 -0.32 10.05 22.27 0.22 -0.09 16 17 C -0.12 -0.34 8.71 22.27 0.19 -0.14 16 18 C -0.15 0.54 7.13 31.12 0.22 0.76 16 19 C 0.09 -0.20 5.27 31.12 0.16 -0.04 16 20 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 21 O -0.57 0.22 13.09 -148.98 -1.95 -1.73 16 22 C -0.14 -0.47 6.55 31.12 0.20 -0.27 16 23 C -0.12 -0.59 9.63 22.61 0.22 -0.38 16 24 C -0.05 -0.03 9.76 22.44 0.22 0.19 16 25 H 0.40 -4.27 8.70 -74.06 -0.64 -4.91 16 26 H 0.12 -0.40 7.96 -2.39 -0.02 -0.42 16 27 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 28 H -0.28 0.33 7.11 99.48 0.71 1.03 16 29 H 0.19 -1.28 4.89 -2.91 -0.01 -1.29 16 30 H 0.42 0.97 8.02 -92.71 -0.74 0.23 16 31 H 0.11 0.93 6.73 -2.91 -0.02 0.91 16 32 H 0.13 0.46 8.06 -2.91 -0.02 0.44 16 33 H 0.14 0.00 8.06 -2.91 -0.02 -0.02 16 34 H 0.15 -0.34 8.06 -2.91 -0.02 -0.36 16 35 H 0.15 -0.35 6.55 -2.91 -0.02 -0.37 16 36 H 0.09 -0.49 8.10 -2.39 -0.02 -0.51 16 37 H 0.12 -0.79 7.79 -2.38 -0.02 -0.81 16 38 H 0.40 -3.68 9.12 -74.05 -0.68 -4.35 16 39 H 0.12 0.00 6.22 -2.39 -0.01 -0.02 16 40 H 0.06 0.62 6.95 -2.39 -0.02 0.61 16 41 H 0.14 0.83 7.64 -2.91 -0.02 0.81 16 42 H 0.16 -0.38 8.06 -2.91 -0.02 -0.41 16 Total: 0.00 -22.66 350.13 -2.39 -25.05 By element: Atomic # 1 Polarization: -9.13 SS G_CDS: -0.93 Total: -10.06 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 3.76 Total: 6.58 kcal Atomic # 7 Polarization: -4.94 SS G_CDS: -3.36 Total: -8.31 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -3.91 Total: -11.04 kcal Atomic # 14 Polarization: -4.28 SS G_CDS: 2.05 Total: -2.23 kcal Total: -22.66 -2.39 -25.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_13287726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.971 kcal (2) G-P(sol) polarization free energy of solvation -22.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds