Wall clock time and date at job start Sat Mar 6 2021 23:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38974 * 119.95523 * 2 1 4 4 O 1.35709 * 119.91276 * 359.97438 * 3 2 1 5 5 C 1.39017 * 120.17485 * 180.02562 * 3 2 1 6 6 C 1.50699 * 119.95450 * 180.02562 * 5 3 2 7 7 O 1.42907 * 109.47342 * 74.97541 * 6 5 3 8 8 Si 1.86309 * 109.47233 * 194.97251 * 6 5 3 9 9 C 1.37685 * 120.08923 * 359.97309 * 5 3 2 10 10 C 1.39746 * 119.91049 * 0.02562 * 9 5 3 11 11 C 1.47609 * 120.08612 * 180.02562 * 10 9 5 12 12 O 1.21580 * 119.99895 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99559 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99431 * 185.00526 * 13 11 10 15 15 C 1.50699 * 112.84967 * 66.50453 * 14 13 11 16 16 C 1.38237 * 119.99851 * 191.06988 * 15 14 13 17 17 C 1.38236 * 119.99518 * 179.74924 * 16 15 14 18 18 C 1.38236 * 120.00490 * 0.54944 * 17 16 15 19 19 C 1.38240 * 119.99485 * 359.70240 * 18 17 16 20 20 C 1.38235 * 120.00245 * 0.02562 * 19 18 17 21 21 C 1.53783 * 113.61354 * 295.30946 * 14 13 11 22 22 C 1.53775 * 87.17298 * 270.84329 * 21 14 13 23 23 H 1.09003 * 113.61975 * 220.06333 * 22 21 14 24 24 O 1.42905 * 113.61728 * 89.15677 * 22 21 14 25 25 C 1.53782 * 113.61117 * 197.81203 * 14 13 11 26 26 C 1.37723 * 119.95546 * 180.26090 * 2 1 3 27 27 H 1.09004 * 109.47242 * 90.00023 * 1 2 3 28 28 H 1.09004 * 109.47221 * 210.00067 * 1 2 3 29 29 H 1.09006 * 109.47333 * 329.99748 * 1 2 3 30 30 H 0.96694 * 114.00550 * 270.02197 * 4 3 2 31 31 H 1.09001 * 109.47352 * 314.97270 * 6 5 3 32 32 H 0.96698 * 113.99700 * 299.99602 * 7 6 5 33 33 H 1.48495 * 109.99633 * 298.68236 * 8 6 5 34 34 H 1.48497 * 109.99504 * 59.99798 * 8 6 5 35 35 H 1.08006 * 120.04433 * 179.97438 * 9 5 3 36 36 H 0.96993 * 120.00463 * 5.00446 * 13 11 10 37 37 H 1.07992 * 120.00011 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.99678 * 180.27785 * 17 16 15 39 39 H 1.07996 * 120.00318 * 179.72812 * 18 17 16 40 40 H 1.08000 * 119.99923 * 179.97438 * 19 18 17 41 41 H 1.08000 * 119.99955 * 179.97438 * 20 19 18 42 42 H 1.08998 * 113.61617 * 25.43538 * 21 14 13 43 43 H 1.09005 * 113.61020 * 156.25572 * 21 14 13 44 44 H 0.96691 * 114.00019 * 180.02562 * 24 22 21 45 45 H 1.09000 * 113.60998 * 203.66077 * 25 14 13 46 46 H 1.09003 * 113.61611 * 334.48505 * 25 14 13 47 47 H 1.08002 * 120.04457 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5911 1.2094 -0.0005 6 6 4.3385 2.5180 0.0000 7 8 4.2720 3.1040 1.3017 8 14 6.1198 2.2159 -0.4547 9 6 4.2859 0.0208 -0.0005 10 6 3.5918 -1.1921 -0.0005 11 6 4.3328 -2.4687 0.0001 12 8 5.5486 -2.4659 0.0011 13 7 3.6615 -3.6375 0.0007 14 6 4.3928 -4.9021 0.1119 15 6 5.0665 -5.0728 1.4491 16 6 5.9795 -6.0935 1.6378 17 6 6.6012 -6.2468 2.8629 18 6 6.3017 -5.3866 3.9026 19 6 5.3848 -4.3691 3.7154 20 6 4.7672 -4.2122 2.4887 21 6 5.3167 -5.1868 -1.0840 22 6 4.1160 -5.8804 -1.7489 23 1 4.3796 -6.7940 -2.2817 24 8 3.3032 -4.9983 -2.5256 25 6 3.5749 -6.1275 -0.3288 26 6 2.1947 -1.1932 -0.0054 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.3222 2.7176 -0.8840 31 1 3.8878 3.1942 -0.7263 32 1 3.3724 3.2892 1.6042 33 1 6.7545 1.3207 0.5458 34 1 6.2026 1.6066 -1.8063 35 1 5.3660 0.0258 -0.0013 36 1 2.6944 -3.6414 -0.0726 37 1 6.2102 -6.7683 0.8269 38 1 7.3179 -7.0415 3.0090 39 1 6.7842 -5.5091 4.8610 40 1 5.1504 -3.6972 4.5278 41 1 4.0506 -3.4175 2.3426 42 1 5.6454 -4.2878 -1.6056 43 1 6.1377 -5.8644 -0.8499 44 1 2.5463 -5.4287 -2.9459 45 1 3.9190 -7.0634 0.1113 46 1 2.4975 -5.9885 -0.2394 47 1 1.6547 -2.1286 -0.0101 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_13287732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:49:54 Heat of formation + Delta-G solvation = -69.326784 kcal Electronic energy + Delta-G solvation = -32620.963211 eV Core-core repulsion = 28315.495599 eV Total energy + Delta-G solvation = -4305.467612 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.150 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.38592 -41.47486 -39.90178 -39.30233 -37.78767 -37.63926 -36.32748 -34.46658 -34.04660 -32.09367 -31.73383 -31.47846 -28.11923 -27.09442 -26.97518 -26.18507 -24.65751 -23.58047 -22.54505 -22.29224 -21.59447 -20.41030 -19.64146 -19.03514 -18.66210 -18.24859 -17.90093 -17.61900 -16.89068 -16.83212 -16.50833 -16.14014 -16.03337 -15.65123 -15.51720 -15.41325 -15.25204 -15.20163 -14.70507 -14.44874 -14.32211 -14.11287 -13.96858 -13.78529 -13.68102 -13.46238 -13.28807 -13.04590 -12.98336 -12.87628 -12.46300 -12.40676 -12.31710 -12.29845 -12.02573 -11.59187 -11.27093 -11.21647 -11.03299 -11.02983 -10.26112 -10.10329 -9.92938 -9.81412 -9.65869 -5.00484 -0.55718 -0.09678 0.31379 0.38723 1.20635 1.45876 1.52591 1.82526 1.87782 2.41570 2.69643 2.93363 3.06825 3.27824 3.35894 3.43335 3.45474 3.54693 3.62599 3.75705 3.77145 3.89464 3.94419 3.98119 4.01417 4.16179 4.26573 4.27958 4.33370 4.46761 4.52171 4.54487 4.59543 4.61258 4.75778 4.76243 4.78620 4.87058 4.89479 4.91953 4.94458 4.98138 5.05224 5.10075 5.18491 5.29518 5.45823 5.47783 5.52064 5.63709 5.99700 6.31972 6.56464 6.60965 6.87645 7.01633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.111 4.111 3 C 0.155 3.845 4 O -0.489 6.489 5 C -0.155 4.155 6 C -0.070 4.070 7 O -0.546 6.546 8 Si 0.800 3.200 9 C -0.082 4.082 10 C -0.151 4.151 11 C 0.560 3.440 12 O -0.571 6.571 13 N -0.679 5.679 14 C 0.186 3.814 15 C -0.082 4.082 16 C -0.120 4.120 17 C -0.122 4.122 18 C -0.132 4.132 19 C -0.134 4.134 20 C -0.125 4.125 21 C -0.142 4.142 22 C 0.089 3.911 23 H 0.097 0.903 24 O -0.566 6.566 25 C -0.144 4.144 26 C -0.058 4.058 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.417 0.583 31 H 0.107 0.893 32 H 0.379 0.621 33 H -0.309 1.309 34 H -0.273 1.273 35 H 0.109 0.891 36 H 0.415 0.585 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.049 0.951 43 H 0.115 0.885 44 H 0.399 0.601 45 H 0.122 0.878 46 H 0.099 0.901 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.090 -2.488 -3.207 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C 0.109 3.891 4 O -0.303 6.303 5 C -0.156 4.156 6 C -0.179 4.179 7 O -0.353 6.353 8 Si 0.705 3.295 9 C -0.101 4.101 10 C -0.154 4.154 11 C 0.349 3.651 12 O -0.451 6.451 13 N -0.331 5.331 14 C 0.099 3.901 15 C -0.084 4.084 16 C -0.138 4.138 17 C -0.140 4.140 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.144 4.144 21 C -0.180 4.180 22 C 0.030 3.970 23 H 0.115 0.885 24 O -0.374 6.374 25 C -0.181 4.181 26 C -0.077 4.077 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.279 0.721 31 H 0.125 0.875 32 H 0.229 0.771 33 H -0.238 1.238 34 H -0.199 1.199 35 H 0.126 0.874 36 H 0.253 0.747 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.124 0.876 42 H 0.068 0.932 43 H 0.133 0.867 44 H 0.250 0.750 45 H 0.140 0.860 46 H 0.118 0.882 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.580 -2.737 -2.680 6.769 hybrid contribution -1.758 -0.650 -0.218 1.887 sum -7.338 -3.387 -2.898 8.586 Atomic orbital electron populations 1.20795 0.87356 1.04479 1.04015 1.20517 0.98742 0.91414 1.00449 1.18268 0.87870 0.86427 0.96564 1.84661 1.75117 1.34819 1.35709 1.20756 0.94616 0.95827 1.04370 1.25071 1.12197 0.91355 0.89321 1.86702 1.33989 1.82589 1.32048 0.92897 0.75922 0.84786 0.75849 1.20953 0.99220 0.92218 0.97687 1.19906 0.94895 0.92465 1.08153 1.18319 0.86843 0.84451 0.75496 1.90785 1.15319 1.88034 1.50965 1.45233 1.10731 1.03628 1.73488 1.20091 0.94240 0.84847 0.90934 1.19966 0.97814 0.96058 0.94515 1.21188 0.96162 0.98107 0.98338 1.21474 0.99805 0.99803 0.92940 1.21455 0.97949 0.95335 1.00256 1.21362 0.97582 0.98868 0.97433 1.20999 1.00608 0.99034 0.93728 1.23594 0.97500 1.01371 0.95507 1.22713 0.90921 0.92729 0.90642 0.88483 1.86488 1.43882 1.39064 1.67971 1.24042 1.01357 0.96284 0.96452 1.21369 0.91119 0.99514 0.95655 0.89185 0.89795 0.90376 0.72136 0.87543 0.77138 1.23774 1.19936 0.87372 0.74656 0.83698 0.83642 0.84425 0.85626 0.87643 0.93220 0.86651 0.75044 0.85982 0.88249 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.72 9.78 71.24 0.70 1.42 16 2 C -0.11 0.09 5.89 -19.81 -0.12 -0.03 16 3 C 0.15 0.16 6.62 22.63 0.15 0.31 16 4 O -0.49 2.13 11.41 -90.30 -1.03 1.10 16 5 C -0.15 -0.96 5.27 -19.81 -0.10 -1.06 16 6 C -0.07 -0.25 2.33 71.24 0.17 -0.09 16 7 O -0.55 -3.00 12.65 -148.98 -1.89 -4.89 16 8 Si 0.80 5.20 30.40 68.60 2.09 7.28 16 9 C -0.08 -0.98 8.20 22.50 0.18 -0.79 16 10 C -0.15 -1.32 5.87 -20.08 -0.12 -1.44 16 11 C 0.56 6.55 5.99 86.72 0.52 7.07 16 12 O -0.57 -11.89 14.71 -3.97 -0.06 -11.95 16 13 N -0.68 -2.64 3.81 -426.96 -1.63 -4.26 16 14 C 0.19 0.59 0.94 3.38 0.00 0.59 16 15 C -0.08 -0.55 4.83 -19.87 -0.10 -0.64 16 16 C -0.12 -0.47 8.61 22.27 0.19 -0.27 16 17 C -0.12 -0.47 10.05 22.27 0.22 -0.24 16 18 C -0.13 -0.73 10.05 22.27 0.22 -0.51 16 19 C -0.13 -1.10 10.05 22.27 0.22 -0.88 16 20 C -0.13 -1.18 8.79 22.27 0.20 -0.99 16 21 C -0.14 -0.62 6.58 31.12 0.20 -0.42 16 22 C 0.09 -0.25 5.29 31.18 0.16 -0.09 16 23 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 24 O -0.57 0.94 13.10 -148.98 -1.95 -1.01 16 25 C -0.14 0.68 7.12 31.18 0.22 0.91 16 26 C -0.06 -0.04 9.18 22.51 0.21 0.16 16 27 H 0.09 -0.82 8.14 -2.38 -0.02 -0.84 16 28 H 0.08 -0.71 8.09 -2.38 -0.02 -0.73 16 29 H 0.08 -0.45 7.52 -2.38 -0.02 -0.46 16 30 H 0.42 -5.47 9.06 -74.06 -0.67 -6.14 16 31 H 0.11 -0.31 7.82 -2.39 -0.02 -0.32 16 32 H 0.38 0.22 8.60 -74.06 -0.64 -0.42 16 33 H -0.31 -5.11 6.81 99.48 0.68 -4.43 16 34 H -0.27 -2.78 7.11 99.48 0.71 -2.07 16 35 H 0.11 1.89 4.51 -2.91 -0.01 1.87 16 36 H 0.41 -0.98 6.70 -92.71 -0.62 -1.60 16 37 H 0.15 -0.23 6.67 -2.91 -0.02 -0.25 16 38 H 0.15 -0.18 8.06 -2.91 -0.02 -0.21 16 39 H 0.14 0.19 8.06 -2.91 -0.02 0.17 16 40 H 0.13 0.71 8.06 -2.91 -0.02 0.68 16 41 H 0.11 1.03 6.52 -2.91 -0.02 1.01 16 42 H 0.05 0.64 7.15 -2.39 -0.02 0.62 16 43 H 0.12 0.17 6.32 -2.38 -0.02 0.15 16 44 H 0.40 -4.37 9.12 -74.06 -0.68 -5.05 16 45 H 0.12 -0.88 7.72 -2.39 -0.02 -0.90 16 46 H 0.10 -0.78 8.09 -2.39 -0.02 -0.80 16 47 H 0.16 -0.98 6.41 -2.91 -0.02 -1.00 16 Total: 0.00 -29.29 382.18 -2.85 -32.14 By element: Atomic # 1 Polarization: -19.88 SS G_CDS: -1.53 Total: -21.40 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 3.14 Total: 3.00 kcal Atomic # 7 Polarization: -2.64 SS G_CDS: -1.63 Total: -4.26 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -4.93 Total: -16.75 kcal Atomic # 14 Polarization: 5.20 SS G_CDS: 2.09 Total: 7.28 kcal Total: -29.29 -2.85 -32.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_13287732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.190 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds