Wall clock time and date at job start Sat Mar 6 2021 23:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47264 * 2 1 4 4 C 1.50699 * 109.46849 * 119.99700 * 2 1 3 5 5 C 1.34847 * 125.90150 * 217.44101 * 4 2 1 6 6 C 1.40946 * 107.46738 * 180.23533 * 5 4 2 7 7 C 1.34848 * 107.46850 * 359.76331 * 6 5 4 8 8 N 1.36569 * 108.19991 * 359.97438 * 7 6 5 9 9 C 1.40198 * 125.66924 * 179.97438 * 8 7 6 10 10 C 1.38821 * 120.06532 * 56.18558 * 9 8 7 11 11 C 1.38127 * 119.93414 * 179.97438 * 10 9 8 12 12 C 1.38269 * 120.06715 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.93710 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47431 * 89.99580 * 13 12 11 15 15 O 1.21280 * 119.99815 * 0.02562 * 14 13 12 16 16 N 1.34770 * 120.00011 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00172 * 184.86412 * 16 14 13 18 18 C 1.50706 * 112.84778 * 67.20032 * 17 16 14 19 19 C 1.38231 * 119.99914 * 190.90908 * 18 17 16 20 20 C 1.38233 * 120.00178 * 179.78704 * 19 18 17 21 21 C 1.38240 * 119.99734 * 0.44195 * 20 19 18 22 22 C 1.38231 * 119.99940 * 359.80918 * 21 20 19 23 23 C 1.38229 * 119.99927 * 11.18077 * 18 17 16 24 24 C 1.53784 * 113.61437 * 296.00633 * 17 16 14 25 25 C 1.53778 * 87.08029 * 270.87970 * 24 17 16 26 26 H 1.09000 * 113.61587 * 220.01704 * 25 24 17 27 27 O 1.42904 * 113.61325 * 89.11668 * 25 24 17 28 28 C 1.53778 * 113.61868 * 198.50736 * 17 16 14 29 29 C 1.38276 * 120.13202 * 0.27376 * 12 11 10 30 30 C 1.38128 * 120.06465 * 359.45660 * 29 12 11 31 31 H 0.96697 * 114.00248 * 305.45546 * 1 2 3 32 32 H 1.08998 * 109.47355 * 239.99287 * 2 1 3 33 33 H 1.48503 * 110.00108 * 299.99446 * 3 2 1 34 34 H 1.48501 * 110.00227 * 61.31697 * 3 2 1 35 35 H 1.08000 * 126.26852 * 359.97438 * 5 4 2 36 36 H 1.08004 * 126.26416 * 179.75199 * 6 5 4 37 37 H 1.08000 * 125.90299 * 179.97438 * 7 6 5 38 38 H 1.07998 * 120.03194 * 359.95219 * 10 9 8 39 39 H 1.08004 * 119.96038 * 180.02562 * 11 10 9 40 40 H 1.09005 * 109.46796 * 329.99625 * 13 12 11 41 41 H 1.08993 * 109.47322 * 209.99917 * 13 12 11 42 42 H 0.96999 * 120.00466 * 4.86886 * 16 14 13 43 43 H 1.08006 * 120.00003 * 0.02562 * 19 18 17 44 44 H 1.07994 * 120.00566 * 180.27152 * 20 19 18 45 45 H 1.08001 * 120.00190 * 179.82938 * 21 20 19 46 46 H 1.08003 * 120.00169 * 180.02562 * 22 21 20 47 47 H 1.08001 * 119.99879 * 359.97438 * 23 18 17 48 48 H 1.09002 * 113.61452 * 156.33168 * 24 17 16 49 49 H 1.09005 * 113.69129 * 25.44314 * 24 17 16 50 50 H 0.96696 * 113.99954 * 179.97438 * 27 25 24 51 51 H 1.09004 * 113.61371 * 334.57212 * 28 17 16 52 52 H 1.08994 * 113.61530 * 203.66659 * 28 17 16 53 53 H 1.08002 * 119.96914 * 179.70774 * 29 12 11 54 54 H 1.07996 * 120.03507 * 180.27823 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 3.0125 -0.3635 1.9578 6 6 3.1277 -1.2906 3.0132 7 6 2.1096 -2.1669 2.8950 8 7 1.3678 -1.8144 1.8039 9 6 0.2223 -2.4795 1.3446 10 6 -0.8607 -2.6660 2.1928 11 6 -1.9882 -3.3211 1.7373 12 6 -2.0391 -3.7906 0.4378 13 6 -3.2709 -4.5045 -0.0563 14 6 -4.2290 -3.5027 -0.6473 15 8 -3.9399 -2.3250 -0.6660 16 7 -5.4072 -3.9154 -1.1552 17 6 -6.2916 -2.9587 -1.8251 18 6 -5.7184 -2.4380 -3.1179 19 6 -6.3150 -1.3672 -3.7568 20 6 -5.7867 -0.8867 -4.9404 21 6 -4.6670 -1.4829 -5.4898 22 6 -4.0734 -2.5569 -4.8535 23 6 -4.5992 -3.0347 -3.6677 24 6 -6.8198 -1.8531 -0.8958 25 6 -7.9932 -2.7933 -0.5737 26 1 -8.9537 -2.2834 -0.4991 27 8 -7.7405 -3.6673 0.5283 28 6 -7.7460 -3.4438 -1.9451 29 6 -0.9600 -3.6109 -0.4079 30 6 0.1681 -2.9516 0.0401 31 1 -0.3933 0.5124 0.7196 32 1 1.7924 -0.5139 -0.8899 33 1 1.5617 2.4679 -1.2086 34 1 1.5879 2.4586 1.2242 35 1 3.6721 0.4695 1.7645 36 1 3.8916 -1.2979 3.7766 37 1 1.9144 -3.0031 3.5501 38 1 -0.8216 -2.2995 3.2080 39 1 -2.8312 -3.4661 2.3968 40 1 -3.7509 -5.0191 0.7761 41 1 -2.9887 -5.2308 -0.8184 42 1 -5.6697 -4.8460 -1.0771 43 1 -7.1918 -0.9035 -3.3293 44 1 -6.2502 -0.0474 -5.4373 45 1 -4.2557 -1.1093 -6.4159 46 1 -3.1983 -3.0225 -5.2825 47 1 -4.1354 -3.8738 -3.1705 48 1 -7.1186 -0.9464 -1.4219 49 1 -6.1732 -1.6530 -0.0414 50 1 -8.4750 -4.2609 0.7360 51 1 -7.8462 -4.5292 -1.9379 52 1 -8.2979 -2.9720 -2.7579 53 1 -1.0007 -3.9828 -1.4211 54 1 1.0089 -2.8075 -0.6222 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_13287746.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:49:57 Heat of formation + Delta-G solvation = 41.653963 kcal Electronic energy + Delta-G solvation = -39000.841869 eV Core-core repulsion = 34257.689366 eV Total energy + Delta-G solvation = -4743.152504 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.177 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.69499 -42.11997 -40.45775 -39.44487 -39.10509 -37.89957 -36.20827 -34.86603 -34.04169 -32.19667 -31.97613 -31.67983 -31.52475 -31.06957 -27.99412 -26.96371 -26.08673 -25.65516 -24.00660 -23.69434 -23.37104 -22.45748 -21.55002 -21.40355 -20.64544 -20.23915 -19.33409 -18.68908 -18.17655 -17.80022 -17.60194 -17.18737 -17.05500 -16.53613 -16.42801 -16.25108 -15.85931 -15.81279 -15.57093 -15.36045 -15.31357 -15.09066 -14.77394 -14.56968 -14.54418 -14.42972 -14.35696 -14.18935 -14.01197 -13.93208 -13.63668 -13.37453 -13.29280 -13.19196 -12.98734 -12.94186 -12.62912 -12.37988 -12.34232 -12.24534 -12.15066 -11.96518 -11.91338 -11.45479 -10.99018 -10.94428 -10.84087 -10.25355 -10.04443 -10.01396 -9.87450 -9.60467 -9.24753 -9.08837 -4.96662 -0.02181 0.30123 0.36840 0.44336 1.03261 1.34534 1.61246 1.69532 1.79540 1.98647 2.08061 2.09899 2.66940 2.75518 3.12131 3.21474 3.46075 3.58182 3.61354 3.65725 3.69619 3.72051 3.77534 3.83688 3.92222 4.06605 4.11657 4.13749 4.19290 4.20223 4.27448 4.36999 4.43063 4.49434 4.50256 4.57775 4.58517 4.59724 4.62025 4.65560 4.80070 4.81199 4.88160 4.91430 4.96070 4.97923 5.03971 5.10230 5.16527 5.18195 5.25773 5.34231 5.41822 5.46142 5.51094 5.56741 5.74866 5.75993 5.92428 6.04853 6.17511 6.32223 6.48452 6.58878 6.90036 7.33715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.066 4.066 3 Si 0.806 3.194 4 C -0.027 4.027 5 C -0.192 4.192 6 C -0.199 4.199 7 C -0.020 4.020 8 N -0.399 5.399 9 C 0.119 3.881 10 C -0.125 4.125 11 C -0.097 4.097 12 C -0.063 4.063 13 C -0.099 4.099 14 C 0.516 3.484 15 O -0.562 6.562 16 N -0.692 5.692 17 C 0.195 3.805 18 C -0.082 4.082 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.118 4.118 24 C -0.140 4.140 25 C 0.088 3.912 26 H 0.089 0.911 27 O -0.562 6.562 28 C -0.148 4.148 29 C -0.097 4.097 30 C -0.105 4.105 31 H 0.375 0.625 32 H 0.118 0.882 33 H -0.296 1.296 34 H -0.289 1.289 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.177 0.823 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.416 0.584 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.130 0.870 47 H 0.118 0.882 48 H 0.106 0.894 49 H 0.053 0.947 50 H 0.398 0.602 51 H 0.098 0.902 52 H 0.114 0.886 53 H 0.137 0.863 54 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -5.437 -0.730 6.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.174 4.174 3 Si 0.709 3.291 4 C -0.136 4.136 5 C -0.216 4.216 6 C -0.223 4.223 7 C -0.147 4.147 8 N -0.073 5.073 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.115 4.115 12 C -0.063 4.063 13 C -0.139 4.139 14 C 0.303 3.697 15 O -0.439 6.439 16 N -0.344 5.344 17 C 0.107 3.893 18 C -0.084 4.084 19 C -0.142 4.142 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.136 4.136 24 C -0.178 4.178 25 C 0.029 3.971 26 H 0.107 0.893 27 O -0.370 6.370 28 C -0.186 4.186 29 C -0.115 4.115 30 C -0.124 4.124 31 H 0.223 0.777 32 H 0.136 0.864 33 H -0.224 1.224 34 H -0.216 1.216 35 H 0.187 0.813 36 H 0.176 0.824 37 H 0.194 0.806 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.254 0.746 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.152 0.848 46 H 0.148 0.852 47 H 0.136 0.864 48 H 0.124 0.876 49 H 0.072 0.928 50 H 0.248 0.752 51 H 0.116 0.884 52 H 0.132 0.868 53 H 0.155 0.845 54 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.220 -4.020 -1.362 5.328 hybrid contribution -1.407 -0.640 0.548 1.640 sum -4.627 -4.660 -0.815 6.617 Atomic orbital electron populations 1.86658 1.18448 1.74684 1.54811 1.25088 0.83442 1.12435 0.96431 0.93594 0.89727 0.69544 0.76242 1.21235 0.99118 0.92654 1.00607 1.21042 0.99307 1.03667 0.97631 1.21234 1.01262 0.97630 1.02198 1.22372 0.95429 1.03832 0.93078 1.41577 1.20520 1.22123 1.23064 1.17716 0.86719 0.98253 0.94416 1.21115 0.92362 1.00805 1.00144 1.21042 0.97410 0.97138 0.95938 1.19512 0.94755 0.98446 0.93632 1.20758 0.91987 0.97069 1.04048 1.20841 0.82089 0.89534 0.77233 1.90772 1.76481 1.19710 1.56944 1.45401 1.18357 1.12634 1.58035 1.19886 0.89859 0.90986 0.88540 1.20020 0.96113 0.96408 0.95811 1.21156 1.00972 0.96278 0.95837 1.21424 0.96604 1.00321 0.96164 1.21439 0.96619 0.96534 1.00795 1.21390 1.00352 0.97445 0.95903 1.21036 0.96234 1.00409 0.95929 1.23528 0.97437 0.97530 0.99293 1.22649 0.97589 0.91184 0.85698 0.89311 1.86468 1.46326 1.54075 1.50171 1.23988 0.92076 1.03320 0.99204 1.21019 0.92379 0.98290 0.99844 1.20965 0.99238 0.97815 0.94423 0.77680 0.86403 1.22383 1.21558 0.81336 0.82373 0.80626 0.85228 0.84206 0.85328 0.85316 0.74644 0.84421 0.84298 0.84800 0.85222 0.86418 0.87604 0.92845 0.75155 0.88370 0.86783 0.84492 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -5.56 10.89 -148.98 -1.62 -7.18 16 2 C -0.07 -0.36 2.50 71.24 0.18 -0.19 16 3 Si 0.81 1.71 30.82 68.60 2.11 3.83 16 4 C -0.03 -0.18 6.12 41.04 0.25 0.07 16 5 C -0.19 -0.85 9.40 22.15 0.21 -0.65 16 6 C -0.20 -0.91 10.86 22.15 0.24 -0.67 16 7 C -0.02 -0.11 11.21 83.18 0.93 0.82 16 8 N -0.40 -3.22 2.84 -333.41 -0.95 -4.16 16 9 C 0.12 0.98 4.67 38.08 0.18 1.16 16 10 C -0.13 -0.82 9.77 22.38 0.22 -0.61 16 11 C -0.10 -0.45 9.69 22.25 0.22 -0.24 16 12 C -0.06 -0.24 4.37 -19.85 -0.09 -0.33 16 13 C -0.10 0.21 5.83 29.10 0.17 0.38 16 14 C 0.52 2.06 6.08 87.66 0.53 2.59 16 15 O -0.56 -7.89 14.41 -3.03 -0.04 -7.94 16 16 N -0.69 0.55 3.83 -423.92 -1.62 -1.07 16 17 C 0.19 0.18 0.94 3.39 0.00 0.18 16 18 C -0.08 -0.39 4.85 -19.87 -0.10 -0.49 16 19 C -0.12 -0.46 8.60 22.27 0.19 -0.26 16 20 C -0.13 -0.49 10.05 22.27 0.22 -0.27 16 21 C -0.14 -0.64 10.05 22.27 0.22 -0.42 16 22 C -0.13 -0.75 10.05 22.27 0.22 -0.52 16 23 C -0.12 -0.70 8.83 22.27 0.20 -0.50 16 24 C -0.14 -0.45 6.58 31.12 0.20 -0.25 16 25 C 0.09 -0.29 5.28 31.12 0.16 -0.13 16 26 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 27 O -0.56 1.64 13.09 -148.98 -1.95 -0.31 16 28 C -0.15 0.77 7.11 31.12 0.22 0.99 16 29 C -0.10 -0.53 9.69 22.25 0.22 -0.31 16 30 C -0.11 -0.83 8.51 22.39 0.19 -0.64 16 31 H 0.38 2.79 8.60 -74.06 -0.64 2.16 16 32 H 0.12 0.48 7.96 -2.39 -0.02 0.46 16 33 H -0.30 -2.56 7.11 99.48 0.71 -1.85 16 34 H -0.29 -2.13 7.11 99.48 0.71 -1.42 16 35 H 0.17 -0.22 6.62 -2.91 -0.02 -0.24 16 36 H 0.16 0.06 8.06 -2.91 -0.02 0.04 16 37 H 0.18 0.29 8.06 -2.91 -0.02 0.26 16 38 H 0.13 0.63 8.06 -2.91 -0.02 0.60 16 39 H 0.14 0.17 8.06 -2.91 -0.02 0.15 16 40 H 0.13 -0.88 8.08 -2.38 -0.02 -0.90 16 41 H 0.13 -0.94 8.08 -2.39 -0.02 -0.96 16 42 H 0.42 -2.76 8.67 -92.71 -0.80 -3.56 16 43 H 0.14 -0.10 6.68 -2.91 -0.02 -0.12 16 44 H 0.14 -0.06 8.06 -2.91 -0.02 -0.08 16 45 H 0.13 0.14 8.06 -2.91 -0.02 0.12 16 46 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 47 H 0.12 0.46 6.54 -2.91 -0.02 0.44 16 48 H 0.11 0.18 6.33 -2.39 -0.02 0.16 16 49 H 0.05 0.58 7.10 -2.38 -0.02 0.57 16 50 H 0.40 -4.61 9.12 -74.06 -0.68 -5.29 16 51 H 0.10 -0.79 8.10 -2.38 -0.02 -0.81 16 52 H 0.11 -0.75 7.72 -2.39 -0.02 -0.77 16 53 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 54 H 0.12 0.91 8.06 -2.91 -0.02 0.89 16 Total: 0.00 -27.14 441.38 -0.19 -27.33 By element: Atomic # 1 Polarization: -9.10 SS G_CDS: -1.12 Total: -10.22 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.00 Total: -0.27 kcal Atomic # 7 Polarization: -2.67 SS G_CDS: -2.57 Total: -5.24 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -3.62 Total: -15.43 kcal Atomic # 14 Polarization: 1.71 SS G_CDS: 2.11 Total: 3.83 kcal Total: -27.14 -0.19 -27.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_13287746.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.984 kcal (2) G-P(sol) polarization free energy of solvation -27.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds