Wall clock time and date at job start Sat Mar 6 2021 23:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47104 * 2 1 4 4 C 1.50704 * 109.47000 * 120.00018 * 2 1 3 5 5 C 1.34175 * 125.44215 * 64.71161 * 4 2 1 6 6 C 1.47015 * 105.95859 * 179.87046 * 5 4 2 7 7 C 1.47374 * 127.19805 * 180.15462 * 6 5 4 8 8 O 1.21614 * 119.99759 * 0.30938 * 7 6 5 9 9 N 1.34777 * 120.00698 * 180.31372 * 7 6 5 10 10 C 1.46495 * 120.00589 * 174.76643 * 9 7 6 11 11 C 1.50698 * 112.84679 * 292.21337 * 10 9 7 12 12 C 1.38236 * 120.00283 * 165.09540 * 11 10 9 13 13 C 1.38236 * 120.00181 * 179.73961 * 12 11 10 14 14 C 1.38237 * 119.99723 * 0.53400 * 13 12 11 15 15 C 1.38231 * 120.00001 * 359.74118 * 14 13 12 16 16 C 1.38228 * 120.00261 * 359.97438 * 15 14 13 17 17 C 1.53774 * 113.61575 * 160.90466 * 10 9 7 18 18 C 1.53778 * 87.07988 * 270.88047 * 17 10 9 19 19 H 1.09006 * 113.61177 * 220.01523 * 18 17 10 20 20 O 1.42901 * 113.61387 * 89.11922 * 18 17 10 21 21 C 1.53768 * 87.08265 * 334.56950 * 18 17 10 22 22 C 1.36428 * 105.61164 * 0.39284 * 6 5 4 23 23 O 1.33650 * 108.39768 * 359.76224 * 22 6 5 24 24 H 0.96698 * 113.99798 * 300.00126 * 1 2 3 25 25 H 1.08998 * 109.46866 * 239.99544 * 2 1 3 26 26 H 1.48504 * 109.99787 * 299.99269 * 3 2 1 27 27 H 1.48490 * 110.00204 * 61.31736 * 3 2 1 28 28 H 1.07998 * 127.01931 * 0.02562 * 5 4 2 29 29 H 0.97003 * 119.99551 * 354.76183 * 9 7 6 30 30 H 1.08003 * 119.99538 * 359.97438 * 12 11 10 31 31 H 1.07996 * 120.00384 * 180.29509 * 13 12 11 32 32 H 1.07998 * 119.99748 * 179.76661 * 14 13 12 33 33 H 1.08004 * 119.99651 * 180.02562 * 15 14 13 34 34 H 1.07998 * 120.00134 * 179.97438 * 16 15 14 35 35 H 1.09000 * 113.61597 * 25.43048 * 17 10 9 36 36 H 1.09006 * 113.61101 * 156.33353 * 17 10 9 37 37 H 0.96700 * 114.00022 * 82.49867 * 20 18 17 38 38 H 1.09005 * 113.61609 * 270.88008 * 21 18 17 39 39 H 1.09004 * 113.69563 * 139.99519 * 21 18 17 40 40 H 1.08000 * 125.79494 * 179.76128 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7504 -2.0110 1.5064 6 6 2.4126 -2.2462 2.7977 7 6 2.5007 -3.5192 3.5350 8 8 1.9943 -4.5246 3.0750 9 7 3.1426 -3.5693 4.7191 10 6 3.1324 -4.8047 5.5063 11 6 1.7671 -5.1423 6.0476 12 6 1.5127 -6.4085 6.5406 13 6 0.2619 -6.7166 7.0421 14 6 -0.7378 -5.7618 7.0404 15 6 -0.4850 -4.4974 6.5422 16 6 0.7674 -4.1875 6.0461 17 6 4.2493 -4.8724 6.5610 18 6 5.1299 -5.5098 5.4733 19 1 5.7558 -6.3236 5.8397 20 8 5.8560 -4.5574 4.6937 21 6 3.8276 -5.9855 4.8084 22 6 2.9238 -1.0384 3.1736 23 8 2.6260 -0.1418 2.2283 24 1 -0.3933 0.4417 0.7650 25 1 1.7923 -0.5139 -0.8899 26 1 1.5616 2.4678 -1.2086 27 1 1.5879 2.4585 1.2241 28 1 1.2275 -2.7373 0.9019 29 1 3.6114 -2.7872 5.0501 30 1 2.2924 -7.1559 6.5374 31 1 0.0645 -7.7043 7.4316 32 1 -1.7161 -6.0036 7.4287 33 1 -1.2660 -3.7513 6.5413 34 1 0.9647 -3.1998 5.6565 35 1 4.6001 -3.8938 6.8889 36 1 4.0262 -5.5431 7.3908 37 1 6.6761 -4.2544 5.1067 38 1 3.4892 -6.9606 5.1590 39 1 3.8366 -5.9065 3.7213 40 1 3.4753 -0.8406 4.0808 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_13456056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:50:33 Heat of formation + Delta-G solvation = -27.515591 kcal Electronic energy + Delta-G solvation = -26579.440698 eV Core-core repulsion = 22715.087535 eV Total energy + Delta-G solvation = -3864.353164 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.73717 -42.05423 -39.70494 -39.18259 -38.17586 -36.20876 -34.51283 -33.60142 -31.97884 -31.67913 -31.50529 -27.04824 -26.83804 -26.07426 -24.59577 -23.50307 -22.45555 -22.27320 -21.06271 -20.25822 -19.41689 -18.63953 -18.02626 -17.69670 -17.54548 -17.30409 -16.95111 -16.44061 -16.21145 -15.96102 -15.70594 -15.55524 -15.22414 -15.10677 -14.59476 -14.37407 -14.24013 -14.03915 -13.98957 -13.62182 -13.58465 -13.19004 -12.97160 -12.94662 -12.33374 -12.25226 -12.14720 -11.95401 -11.51584 -11.06806 -10.96989 -10.92754 -10.77096 -10.11461 -9.87490 -9.81238 -9.60581 -4.92363 0.26393 0.36941 0.44401 0.80739 1.16646 1.51802 1.74373 1.93668 1.99199 2.27724 2.75574 3.14059 3.19677 3.43537 3.48782 3.54676 3.62478 3.70380 3.81187 3.92894 4.04118 4.07351 4.20772 4.30613 4.38238 4.45630 4.49274 4.58933 4.60095 4.68963 4.83178 4.85533 4.89336 4.97382 5.00569 5.03554 5.10633 5.11689 5.38667 5.51604 5.57336 5.71744 5.81158 6.05168 6.32299 6.49857 6.94824 7.20483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.047 4.047 3 Si 0.793 3.207 4 C -0.049 4.049 5 C -0.152 4.152 6 C -0.267 4.267 7 C 0.590 3.410 8 O -0.574 6.574 9 N -0.682 5.682 10 C 0.191 3.809 11 C -0.082 4.082 12 C -0.122 4.122 13 C -0.125 4.125 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.123 4.123 17 C -0.144 4.144 18 C 0.088 3.912 19 H 0.093 0.907 20 O -0.564 6.564 21 C -0.143 4.143 22 C 0.064 3.936 23 O -0.164 6.164 24 H 0.390 0.610 25 H 0.147 0.853 26 H -0.286 1.286 27 H -0.284 1.284 28 H 0.141 0.859 29 H 0.415 0.585 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.399 0.601 38 H 0.113 0.887 39 H 0.051 0.949 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.530 3.074 6.073 9.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.155 4.155 3 Si 0.696 3.304 4 C -0.097 4.097 5 C -0.172 4.172 6 C -0.271 4.271 7 C 0.379 3.621 8 O -0.454 6.454 9 N -0.333 5.333 10 C 0.104 3.896 11 C -0.084 4.084 12 C -0.140 4.140 13 C -0.143 4.143 14 C -0.152 4.152 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.182 4.182 18 C 0.029 3.971 19 H 0.111 0.889 20 O -0.372 6.372 21 C -0.181 4.181 22 C -0.007 4.007 23 O -0.059 6.059 24 H 0.240 0.760 25 H 0.164 0.836 26 H -0.213 1.213 27 H -0.211 1.211 28 H 0.159 0.841 29 H 0.253 0.747 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.249 0.751 38 H 0.131 0.869 39 H 0.070 0.930 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 5.622 3.108 4.790 8.013 hybrid contribution -1.016 -0.254 0.727 1.274 sum 4.606 2.854 5.517 7.733 Atomic orbital electron populations 1.86649 1.17569 1.80611 1.49999 1.24758 0.83467 1.13550 0.93743 0.93410 0.89847 0.70048 0.77136 1.22694 1.01344 0.92719 0.92978 1.22533 1.02294 0.96023 0.96307 1.21522 1.11032 0.95041 0.99539 1.17422 0.77252 0.86886 0.80495 1.90787 1.48850 1.37109 1.68624 1.45132 1.54103 1.14818 1.19287 1.19993 0.91247 0.85662 0.92743 1.20001 0.95328 0.94433 0.98607 1.21202 0.98033 0.95798 0.98976 1.21452 0.93169 1.00272 0.99389 1.21450 1.00226 0.93579 0.99968 1.21372 0.97084 0.97670 0.99056 1.21030 0.93599 0.99562 0.99891 1.23991 0.93350 1.04325 0.96517 1.22660 0.91982 0.91646 0.90796 0.88901 1.86491 1.40590 1.61837 1.48293 1.23591 0.95272 0.98542 1.00713 1.25247 0.97014 0.85071 0.93336 1.83717 1.56984 1.38903 1.26340 0.75982 0.83561 1.21314 1.21051 0.84109 0.74712 0.84040 0.83988 0.84628 0.85406 0.86865 0.88076 0.86363 0.75082 0.86933 0.92979 0.72433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.65 12.88 -148.98 -1.92 -3.57 16 2 C -0.05 0.01 2.97 71.24 0.21 0.22 16 3 Si 0.79 -2.08 32.09 68.60 2.20 0.12 16 4 C -0.05 -0.11 6.18 24.76 0.15 0.04 16 5 C -0.15 -1.10 10.90 23.65 0.26 -0.85 16 6 C -0.27 -1.28 6.31 -18.99 -0.12 -1.40 16 7 C 0.59 5.03 6.32 86.65 0.55 5.58 16 8 O -0.57 -10.54 15.44 -4.07 -0.06 -10.60 16 9 N -0.68 -0.52 3.75 -427.22 -1.60 -2.12 16 10 C 0.19 0.23 0.94 3.38 0.00 0.23 16 11 C -0.08 -0.40 4.83 -19.86 -0.10 -0.49 16 12 C -0.12 -0.38 8.80 22.27 0.20 -0.19 16 13 C -0.12 -0.39 10.05 22.27 0.22 -0.17 16 14 C -0.13 -0.58 10.05 22.27 0.22 -0.36 16 15 C -0.13 -0.80 10.05 22.27 0.22 -0.57 16 16 C -0.12 -0.82 8.96 22.27 0.20 -0.62 16 17 C -0.14 0.88 7.13 31.12 0.22 1.10 16 18 C 0.09 -0.34 5.28 31.12 0.16 -0.18 16 19 H 0.09 -0.69 8.14 -2.38 -0.02 -0.71 16 20 O -0.56 1.71 13.09 -148.98 -1.95 -0.24 16 21 C -0.14 -0.45 6.56 31.11 0.20 -0.25 16 22 C 0.06 -0.23 11.61 67.40 0.78 0.56 16 23 O -0.16 0.15 8.90 4.43 0.04 0.19 16 24 H 0.39 -1.08 8.70 -74.06 -0.64 -1.73 16 25 H 0.15 -0.37 7.96 -2.39 -0.02 -0.39 16 26 H -0.29 -1.01 7.11 99.48 0.71 -0.30 16 27 H -0.28 -0.60 7.11 99.48 0.71 0.10 16 28 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 29 H 0.42 -2.68 7.66 -92.71 -0.71 -3.39 16 30 H 0.14 -0.23 6.44 -2.91 -0.02 -0.25 16 31 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 32 H 0.14 0.06 8.06 -2.91 -0.02 0.04 16 33 H 0.13 0.38 8.06 -2.91 -0.02 0.36 16 34 H 0.11 0.63 6.78 -2.91 -0.02 0.62 16 35 H 0.10 -0.97 8.10 -2.39 -0.02 -0.99 16 36 H 0.12 -0.94 7.85 -2.38 -0.02 -0.96 16 37 H 0.40 -4.85 9.12 -74.06 -0.68 -5.53 16 38 H 0.11 0.07 6.14 -2.38 -0.01 0.05 16 39 H 0.05 0.60 7.03 -2.39 -0.02 0.59 16 40 H 0.26 -3.74 7.48 -2.91 -0.02 -3.77 16 Total: 0.00 -27.82 340.93 -0.77 -28.60 By element: Atomic # 1 Polarization: -14.17 SS G_CDS: -0.88 Total: -15.04 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 3.40 Total: 2.67 kcal Atomic # 7 Polarization: -0.52 SS G_CDS: -1.60 Total: -2.12 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -3.89 Total: -14.22 kcal Atomic # 14 Polarization: -2.08 SS G_CDS: 2.20 Total: 0.12 kcal Total: -27.82 -0.77 -28.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_13456056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.083 kcal (2) G-P(sol) polarization free energy of solvation -27.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds