Wall clock time and date at job start Sat Mar 6 2021 23:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.47265 * 2 1 4 4 C 1.50699 * 109.47025 * 239.99623 * 2 1 3 5 5 C 1.31123 * 118.54086 * 120.00103 * 4 2 1 6 6 N 1.38922 * 121.84523 * 180.42699 * 5 4 2 7 7 C 1.47026 * 118.88596 * 346.68921 * 6 5 4 8 8 C 1.50700 * 109.82463 * 163.20011 * 7 6 5 9 9 O 1.21276 * 119.99731 * 340.00151 * 8 7 6 10 10 N 1.34780 * 120.00099 * 159.99165 * 8 7 6 11 11 C 1.46496 * 120.00055 * 184.84114 * 10 8 7 12 12 C 1.50708 * 112.85141 * 305.22453 * 11 10 8 13 13 C 1.38233 * 119.99760 * 334.35726 * 12 11 10 14 14 C 1.38237 * 119.99794 * 179.80950 * 13 12 11 15 15 C 1.38235 * 119.99836 * 0.39224 * 14 13 12 16 16 C 1.38235 * 119.99945 * 359.86389 * 15 14 13 17 17 C 1.38228 * 120.00017 * 154.63008 * 12 11 10 18 18 C 1.53784 * 113.61530 * 174.02911 * 11 10 8 19 19 C 1.53775 * 87.07908 * 270.80073 * 18 11 10 20 20 H 1.09005 * 113.61602 * 220.01772 * 19 18 11 21 21 O 1.42901 * 113.61602 * 89.20214 * 19 18 11 22 22 C 1.53777 * 113.69258 * 76.49029 * 11 10 8 23 23 C 1.53540 * 107.66320 * 43.66065 * 7 6 5 24 24 C 1.50196 * 118.55356 * 300.02254 * 4 2 1 25 25 H 0.96699 * 113.99974 * 59.99904 * 1 2 3 26 26 H 1.09008 * 109.47155 * 119.99892 * 2 1 3 27 27 H 1.48500 * 109.99770 * 59.99875 * 3 2 1 28 28 H 1.48494 * 110.00144 * 181.31678 * 3 2 1 29 29 H 1.07999 * 119.07522 * 0.40389 * 5 4 2 30 30 H 0.97000 * 120.55861 * 166.70156 * 6 5 4 31 31 H 1.09006 * 109.81814 * 284.05901 * 7 6 5 32 32 H 0.96997 * 119.99784 * 4.85315 * 10 8 7 33 33 H 1.08003 * 119.99946 * 359.97438 * 13 12 11 34 34 H 1.07999 * 119.99866 * 180.23760 * 14 13 12 35 35 H 1.08002 * 119.99729 * 179.83061 * 15 14 13 36 36 H 1.07996 * 119.99443 * 179.97438 * 16 15 14 37 37 H 1.08002 * 120.00096 * 359.97438 * 17 12 11 38 38 H 1.08998 * 113.61384 * 156.25141 * 18 11 10 39 39 H 1.09000 * 113.61319 * 25.34903 * 18 11 10 40 40 H 0.96697 * 114.00058 * 181.53102 * 21 19 18 41 41 H 1.09001 * 113.61509 * 334.58705 * 22 11 10 42 42 H 1.09000 * 113.61963 * 203.67262 * 22 11 10 43 43 H 1.08999 * 109.62373 * 58.77162 * 23 7 6 44 44 H 1.08992 * 109.62369 * 179.33344 * 23 7 6 45 45 H 1.08999 * 109.33102 * 280.18835 * 24 4 2 46 46 H 1.09001 * 109.32553 * 39.83584 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.6832 -0.0460 -2.0745 6 7 3.1760 -0.6306 -3.2344 7 6 3.1006 -2.0916 -3.3807 8 6 3.2940 -2.4711 -4.8263 9 8 3.1170 -1.6471 -5.6984 10 7 3.6640 -3.7260 -5.1499 11 6 3.9550 -4.0673 -6.5445 12 6 2.8213 -3.7299 -7.4784 13 6 1.5257 -3.6724 -7.0001 14 6 0.4862 -3.3591 -7.8559 15 6 0.7416 -3.1113 -9.1917 16 6 2.0366 -3.1741 -9.6710 17 6 3.0764 -3.4836 -8.8144 18 6 4.5014 -5.4930 -6.7287 19 6 5.9045 -4.8966 -6.5282 20 1 6.6586 -5.3220 -7.1905 21 8 6.3220 -4.8621 -5.1620 22 6 5.3243 -3.5641 -7.0310 23 6 1.7091 -2.5359 -2.9076 24 6 1.5483 -2.1482 -1.4359 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5138 0.8901 27 1 1.5615 2.4678 1.2085 28 1 3.5346 1.7703 -0.0321 29 1 2.9258 0.9848 -1.8622 30 1 3.5636 -0.0841 -3.9358 31 1 3.8686 -2.5645 -2.7686 32 1 3.7373 -4.4033 -4.4594 33 1 1.3258 -3.8697 -5.9572 34 1 -0.5256 -3.3104 -7.4814 35 1 -0.0708 -2.8692 -9.8609 36 1 2.2360 -2.9808 -10.7147 37 1 4.0883 -3.5325 -9.1890 38 1 4.3376 -5.8977 -7.7275 39 1 4.2022 -6.1808 -5.9379 40 1 7.1940 -4.4666 -5.0271 41 1 5.6895 -2.6949 -6.4841 42 1 5.3855 -3.4416 -8.1123 43 1 0.9438 -2.0382 -3.5030 44 1 1.6142 -3.6165 -3.0139 45 1 2.1884 -2.7832 -0.8234 46 1 0.5091 -2.2905 -1.1394 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_15413834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:50:43 Heat of formation + Delta-G solvation = -24.648694 kcal Electronic energy + Delta-G solvation = -29499.587015 eV Core-core repulsion = 25550.227734 eV Total energy + Delta-G solvation = -3949.359281 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.20869 -40.68633 -39.32505 -39.09829 -37.32796 -36.18911 -34.24733 -33.16315 -32.77450 -31.71651 -31.65542 -27.74404 -26.98301 -25.76049 -25.19057 -23.79532 -23.37897 -22.56642 -21.69106 -20.29888 -19.38912 -19.11113 -18.51033 -17.99146 -17.86979 -17.14250 -16.77702 -16.36222 -16.26054 -15.91820 -15.64130 -15.62687 -15.31564 -15.26942 -15.16934 -14.94369 -14.45043 -14.30183 -14.06915 -13.92996 -13.85385 -13.52033 -13.36333 -13.12400 -12.91835 -12.87932 -12.43595 -12.19315 -12.01770 -11.92466 -11.91325 -11.80753 -11.50945 -11.29046 -10.91447 -10.75204 -10.20355 -10.09479 -9.80850 -9.52315 -8.44595 -4.99292 0.43021 0.50761 1.33376 1.41914 1.49616 1.61372 1.87450 1.98215 2.62772 2.81724 3.09245 3.47873 3.49229 3.60253 3.68229 3.73915 3.78265 3.84288 3.87840 4.04011 4.07778 4.10629 4.23218 4.33539 4.37527 4.43036 4.57980 4.59943 4.63422 4.64155 4.69604 4.76926 4.78878 4.87667 4.94388 4.97882 5.03291 5.08269 5.15368 5.19599 5.29813 5.42087 5.55972 5.57456 5.62683 5.74060 6.10603 6.25042 6.48784 6.81337 6.83369 6.90918 7.17384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.047 4.047 3 Si 0.756 3.244 4 C -0.289 4.289 5 C 0.141 3.859 6 N -0.735 5.735 7 C 0.140 3.860 8 C 0.516 3.484 9 O -0.551 6.551 10 N -0.686 5.686 11 C 0.191 3.809 12 C -0.072 4.072 13 C -0.112 4.112 14 C -0.133 4.133 15 C -0.135 4.135 16 C -0.128 4.128 17 C -0.124 4.124 18 C -0.121 4.121 19 C 0.088 3.912 20 H 0.091 0.909 21 O -0.562 6.562 22 C -0.172 4.172 23 C -0.118 4.118 24 C -0.052 4.052 25 H 0.391 0.609 26 H 0.093 0.907 27 H -0.305 1.305 28 H -0.288 1.288 29 H 0.143 0.857 30 H 0.407 0.593 31 H 0.100 0.900 32 H 0.415 0.585 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.397 0.603 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -3.127 -3.324 5.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.159 4.159 3 Si 0.664 3.336 4 C -0.299 4.299 5 C 0.020 3.980 6 N -0.367 5.367 7 C 0.031 3.969 8 C 0.302 3.698 9 O -0.428 6.428 10 N -0.338 5.338 11 C 0.104 3.896 12 C -0.073 4.073 13 C -0.130 4.130 14 C -0.151 4.151 15 C -0.153 4.153 16 C -0.146 4.146 17 C -0.142 4.142 18 C -0.158 4.158 19 C 0.029 3.971 20 H 0.109 0.891 21 O -0.370 6.370 22 C -0.211 4.211 23 C -0.157 4.157 24 C -0.090 4.090 25 H 0.240 0.760 26 H 0.110 0.890 27 H -0.234 1.234 28 H -0.215 1.215 29 H 0.160 0.840 30 H 0.243 0.757 31 H 0.118 0.882 32 H 0.253 0.747 33 H 0.130 0.870 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.140 0.860 39 H 0.107 0.893 40 H 0.247 0.753 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.954 -2.683 -2.877 4.919 hybrid contribution 0.625 -0.062 0.352 0.720 sum 3.579 -2.745 -2.524 5.169 Atomic orbital electron populations 1.86420 1.18199 1.82085 1.50287 1.24744 0.84653 1.08879 0.97602 0.94113 0.77670 0.76872 0.84955 1.20962 1.08672 0.99004 1.01279 1.20485 0.93738 0.96817 0.86953 1.44327 1.68018 1.04873 1.19496 1.21027 0.99948 0.83732 0.92213 1.20699 0.75809 0.82402 0.90907 1.90752 1.50547 1.50658 1.50866 1.45437 1.68695 1.11247 1.08448 1.19992 0.91536 0.97282 0.80776 1.19794 0.93948 0.99311 0.94233 1.20934 0.92809 0.99940 0.99320 1.21341 0.99549 0.99968 0.94268 1.21409 0.97703 1.00328 0.95874 1.21405 0.92843 0.99643 1.00659 1.21212 1.00058 1.00138 0.92834 1.23454 0.93675 0.93917 1.04779 1.22670 0.96097 0.94517 0.83833 0.89081 1.86367 1.41279 1.84604 1.24723 1.24204 0.95169 0.98998 1.02704 1.21806 0.94397 1.02188 0.97310 1.19912 1.01863 0.92632 0.94546 0.75987 0.88966 1.23388 1.21534 0.84020 0.75651 0.88245 0.74712 0.86996 0.85523 0.84911 0.84393 0.84314 0.86025 0.89265 0.75324 0.91963 0.87264 0.91927 0.88898 0.91554 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.53 12.54 -148.98 -1.87 -3.39 16 2 C -0.05 -0.07 2.83 71.24 0.20 0.13 16 3 Si 0.76 0.07 29.68 68.60 2.04 2.10 16 4 C -0.29 -0.26 5.45 -16.77 -0.09 -0.35 16 5 C 0.14 0.01 9.63 83.41 0.80 0.81 16 6 N -0.73 -0.69 5.46 -329.00 -1.80 -2.48 16 7 C 0.14 -0.08 3.36 44.33 0.15 0.07 16 8 C 0.52 1.11 5.92 87.66 0.52 1.63 16 9 O -0.55 -5.27 14.41 -3.02 -0.04 -5.31 16 10 N -0.69 1.17 4.05 -423.92 -1.72 -0.55 16 11 C 0.19 -0.18 0.95 3.39 0.00 -0.18 16 12 C -0.07 -0.24 4.07 -19.87 -0.08 -0.32 16 13 C -0.11 -0.58 8.20 22.27 0.18 -0.40 16 14 C -0.13 -0.68 10.05 22.27 0.22 -0.46 16 15 C -0.14 -0.54 10.05 22.27 0.22 -0.31 16 16 C -0.13 -0.37 10.05 22.27 0.22 -0.14 16 17 C -0.12 -0.30 9.25 22.27 0.21 -0.10 16 18 C -0.12 0.59 7.16 31.12 0.22 0.81 16 19 C 0.09 -0.50 5.27 31.12 0.16 -0.34 16 20 H 0.09 -0.79 8.14 -2.38 -0.02 -0.81 16 21 O -0.56 2.77 13.09 -148.98 -1.95 0.82 16 22 C -0.17 0.39 6.98 31.12 0.22 0.61 16 23 C -0.12 0.15 5.47 30.79 0.17 0.32 16 24 C -0.05 -0.01 5.83 29.70 0.17 0.16 16 25 H 0.39 -1.85 8.70 -74.06 -0.64 -2.49 16 26 H 0.09 0.31 7.96 -2.38 -0.02 0.29 16 27 H -0.31 -2.48 7.11 99.48 0.71 -1.77 16 28 H -0.29 -1.25 7.10 99.48 0.71 -0.54 16 29 H 0.14 -0.42 4.36 -2.91 -0.01 -0.43 16 30 H 0.41 0.67 8.12 -92.71 -0.75 -0.08 16 31 H 0.10 -0.27 8.14 -2.38 -0.02 -0.29 16 32 H 0.42 -2.12 8.62 -92.71 -0.80 -2.92 16 33 H 0.11 0.45 7.08 -2.91 -0.02 0.43 16 34 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 35 H 0.13 0.05 8.06 -2.91 -0.02 0.02 16 36 H 0.14 -0.18 8.06 -2.91 -0.02 -0.21 16 37 H 0.14 -0.29 5.92 -2.91 -0.02 -0.30 16 38 H 0.12 -0.81 8.09 -2.39 -0.02 -0.83 16 39 H 0.09 -0.45 8.10 -2.39 -0.02 -0.47 16 40 H 0.40 -4.32 9.12 -74.06 -0.68 -5.00 16 41 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.11 -0.43 5.77 -2.39 -0.01 -0.44 16 43 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 46 H 0.07 0.12 7.82 -2.39 -0.02 0.11 16 Total: 0.00 -19.05 366.65 -3.61 -22.66 By element: Atomic # 1 Polarization: -14.01 SS G_CDS: -1.79 Total: -15.79 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 3.51 Total: 1.95 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -3.51 Total: -3.03 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -3.86 Total: -7.89 kcal Atomic # 14 Polarization: 0.07 SS G_CDS: 2.04 Total: 2.10 kcal Total: -19.05 -3.61 -22.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_15413834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.987 kcal (2) G-P(sol) polarization free energy of solvation -19.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds