Wall clock time and date at job start Sat Mar 6 2021 23:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.47119 * 2 1 4 4 C 1.50703 * 109.46938 * 120.00176 * 2 1 3 5 5 C 1.38261 * 119.94331 * 65.00083 * 4 2 1 6 6 C 1.38149 * 120.05569 * 179.97438 * 5 4 2 7 7 C 1.38735 * 119.94152 * 359.97438 * 6 5 4 8 8 O 1.35902 * 120.05565 * 180.02562 * 7 6 5 9 9 C 1.42893 * 117.00226 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47244 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.47090 * 180.02562 * 10 9 8 12 12 O 1.21274 * 119.99806 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99858 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99890 * 185.03530 * 13 11 10 15 15 C 1.50702 * 112.84889 * 294.36762 * 14 13 11 16 16 C 1.38229 * 119.99924 * 167.42066 * 15 14 13 17 17 C 1.38237 * 119.99847 * 179.75959 * 16 15 14 18 18 C 1.38242 * 120.00106 * 0.48923 * 17 16 15 19 19 C 1.38236 * 119.99518 * 359.78818 * 18 17 16 20 20 C 1.38229 * 120.00150 * 359.95212 * 19 18 17 21 21 C 1.53778 * 113.69134 * 163.09546 * 14 13 11 22 22 C 1.53775 * 87.08484 * 270.87289 * 21 14 13 23 23 H 1.08998 * 113.62021 * 220.02256 * 22 21 14 24 24 O 1.42897 * 113.69125 * 89.12212 * 22 21 14 25 25 C 1.53785 * 87.08193 * 334.56760 * 22 21 14 26 26 C 1.38734 * 119.88911 * 0.27491 * 7 6 5 27 27 C 1.38148 * 119.94091 * 359.43041 * 26 7 6 28 28 H 0.96706 * 114.00059 * 299.99724 * 1 2 3 29 29 H 1.09001 * 109.46529 * 239.99875 * 2 1 3 30 30 H 1.48498 * 110.00194 * 300.00138 * 3 2 1 31 31 H 1.48502 * 109.99839 * 61.32505 * 3 2 1 32 32 H 1.08006 * 119.97728 * 359.97438 * 5 4 2 33 33 H 1.08000 * 120.02952 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.47099 * 59.99630 * 9 8 7 35 35 H 1.09000 * 109.46937 * 299.99855 * 9 8 7 36 36 H 1.09003 * 109.47086 * 59.99976 * 10 9 8 37 37 H 1.09000 * 109.47324 * 299.99972 * 10 9 8 38 38 H 0.97000 * 120.00290 * 5.03402 * 13 11 10 39 39 H 1.08001 * 120.00129 * 359.97438 * 16 15 14 40 40 H 1.07999 * 120.00033 * 180.24758 * 17 16 15 41 41 H 1.07992 * 120.00167 * 179.76174 * 18 17 16 42 42 H 1.08002 * 119.99743 * 179.97438 * 19 18 17 43 43 H 1.08007 * 120.00040 * 180.02562 * 20 19 18 44 44 H 1.09001 * 113.61479 * 25.42596 * 21 14 13 45 45 H 1.08998 * 113.61291 * 156.32138 * 21 14 13 46 46 H 0.96701 * 113.99571 * 82.47229 * 24 22 21 47 47 H 1.09004 * 113.61479 * 270.88993 * 25 22 21 48 48 H 1.09000 * 113.61972 * 139.97492 * 25 22 21 49 49 H 1.07995 * 120.02439 * 179.71928 * 26 7 6 50 50 H 1.08003 * 119.96939 * 180.31638 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.6840 -2.0605 1.3972 6 6 2.1438 -2.7142 2.5240 7 6 2.8547 -2.0149 3.4885 8 8 3.3086 -2.6558 4.5976 9 6 4.0326 -1.8728 5.5488 10 6 4.4587 -2.7594 6.7206 11 6 5.2217 -1.9334 7.7240 12 8 5.4068 -0.7521 7.5215 13 7 5.6992 -2.5078 8.8458 14 6 6.3439 -1.6853 9.8725 15 6 7.6315 -1.0615 9.3992 16 6 8.2273 -0.0588 10.1412 17 6 9.4110 0.5100 9.7096 18 6 9.9935 0.0831 8.5308 19 6 9.3946 -0.9156 7.7860 20 6 8.2138 -1.4880 8.2203 21 6 6.4625 -2.3824 11.2381 22 6 5.0772 -1.8013 11.5670 23 1 4.9860 -1.4436 12.5925 24 8 3.9928 -2.6452 11.1750 25 6 5.3899 -0.6888 10.5522 26 6 3.0971 -0.6592 3.3213 27 6 2.6404 -0.0115 2.1898 28 1 -0.3933 0.4417 0.7651 29 1 1.7922 -0.5139 -0.8900 30 1 1.5615 2.4679 -1.2084 31 1 1.5880 2.4584 1.2243 32 1 1.1308 -2.6046 0.6458 33 1 1.9500 -3.7687 2.6539 34 1 3.3964 -1.0673 5.9156 35 1 4.9170 -1.4493 5.0727 36 1 5.0947 -3.5652 6.3540 37 1 3.5741 -3.1826 7.1965 38 1 5.6160 -3.4658 8.9735 39 1 7.7699 0.2777 11.0598 40 1 9.8786 1.2905 10.2913 41 1 10.9162 0.5302 8.1917 42 1 9.8495 -1.2488 6.8648 43 1 7.7461 -2.2686 7.6385 44 1 6.4755 -3.4704 11.1733 45 1 7.2622 -1.9851 11.8631 46 1 3.7913 -3.3468 11.8093 47 1 5.8965 0.1715 10.9897 48 1 4.5370 -0.4097 9.9336 49 1 3.6464 -0.1118 4.0729 50 1 2.8332 1.0428 2.0568 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_4549602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:51:01 Heat of formation + Delta-G solvation = -58.721118 kcal Electronic energy + Delta-G solvation = -33033.231859 eV Core-core repulsion = 28572.686525 eV Total energy + Delta-G solvation = -4460.545334 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.14760 -41.31613 -39.96651 -39.28582 -39.09729 -37.31533 -36.21379 -34.21479 -33.18638 -32.07265 -31.75235 -31.64381 -31.33989 -27.06037 -26.80022 -26.05453 -25.13748 -23.67478 -23.39694 -22.49134 -22.20021 -21.43956 -20.24678 -19.56439 -18.66517 -18.43117 -17.97009 -17.63695 -17.43395 -17.21310 -16.91581 -16.41731 -16.40118 -16.12961 -15.93237 -15.71573 -15.53228 -15.32244 -15.09989 -14.77803 -14.57690 -14.48167 -14.34084 -14.30831 -14.05203 -13.88060 -13.58810 -13.50006 -13.26048 -12.96521 -12.87734 -12.82252 -12.33423 -12.29711 -12.21666 -12.08802 -11.92467 -11.81706 -11.60744 -11.43814 -10.97953 -10.89975 -10.60775 -10.07208 -10.06015 -9.82820 -9.56131 -9.25280 -4.94713 0.25536 0.28244 0.40920 0.48891 1.30094 1.55534 1.56743 1.68282 1.91991 2.43694 2.62515 2.79149 3.12906 3.42706 3.46099 3.54376 3.61907 3.69123 3.71764 3.77719 3.80480 3.86673 3.89152 3.96664 4.10342 4.10971 4.23282 4.23863 4.31195 4.37298 4.43130 4.54832 4.60371 4.62700 4.64829 4.65742 4.68476 4.75625 4.81869 4.88066 4.95233 4.95662 4.97997 5.06941 5.13710 5.15679 5.26517 5.41729 5.46808 5.55179 5.61212 5.69861 5.75049 6.08989 6.29357 6.47431 6.49104 6.91133 7.21106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.074 4.074 3 Si 0.758 3.242 4 C -0.158 4.158 5 C -0.057 4.057 6 C -0.158 4.158 7 C 0.124 3.876 8 O -0.321 6.321 9 C 0.077 3.923 10 C -0.133 4.133 11 C 0.521 3.479 12 O -0.566 6.566 13 N -0.688 5.688 14 C 0.191 3.809 15 C -0.080 4.080 16 C -0.123 4.123 17 C -0.127 4.127 18 C -0.135 4.135 19 C -0.134 4.134 20 C -0.116 4.116 21 C -0.149 4.149 22 C 0.087 3.913 23 H 0.091 0.909 24 O -0.564 6.564 25 C -0.139 4.139 26 C -0.211 4.211 27 C -0.081 4.081 28 H 0.385 0.615 29 H 0.127 0.873 30 H -0.301 1.301 31 H -0.286 1.286 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.417 0.583 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.399 0.601 47 H 0.112 0.888 48 H 0.053 0.947 49 H 0.136 0.864 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -4.042 5.884 8.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.183 4.183 3 Si 0.664 3.336 4 C -0.158 4.158 5 C -0.075 4.075 6 C -0.177 4.177 7 C 0.078 3.922 8 O -0.235 6.235 9 C 0.002 3.998 10 C -0.172 4.172 11 C 0.309 3.691 12 O -0.445 6.445 13 N -0.340 5.340 14 C 0.104 3.896 15 C -0.081 4.081 16 C -0.141 4.141 17 C -0.144 4.144 18 C -0.153 4.153 19 C -0.152 4.152 20 C -0.134 4.134 21 C -0.186 4.186 22 C 0.028 3.972 23 H 0.109 0.891 24 O -0.372 6.372 25 C -0.177 4.177 26 C -0.229 4.229 27 C -0.099 4.099 28 H 0.234 0.766 29 H 0.145 0.855 30 H -0.229 1.229 31 H -0.213 1.213 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.255 0.745 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.131 0.869 44 H 0.115 0.885 45 H 0.134 0.866 46 H 0.249 0.751 47 H 0.130 0.870 48 H 0.072 0.928 49 H 0.154 0.846 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.635 -2.521 4.762 6.500 hybrid contribution -1.061 -0.508 0.841 1.446 sum 2.575 -3.029 5.603 6.870 Atomic orbital electron populations 1.86565 1.18590 1.80315 1.50132 1.25089 0.83307 1.11290 0.98607 0.94110 0.90582 0.72639 0.76224 1.20242 1.02550 0.95175 0.97851 1.21004 0.96494 0.93663 0.96376 1.20689 1.01714 1.01417 0.93858 1.19201 0.94568 0.91309 0.87103 1.85956 1.69228 1.38828 1.29510 1.22392 0.95698 0.93436 0.88283 1.21425 1.02830 0.99260 0.93711 1.20509 0.78490 0.87792 0.82357 1.90753 1.58743 1.17796 1.77206 1.45366 1.58971 1.11725 1.17929 1.19976 0.89070 0.92794 0.87776 1.19953 0.95714 0.97029 0.95452 1.21165 0.96070 0.96175 1.00728 1.21426 0.95921 1.00262 0.96840 1.21437 1.00799 0.97481 0.95558 1.21372 0.96084 0.97353 1.00379 1.20997 0.95787 1.00343 0.96249 1.23999 0.99255 1.02258 0.93130 1.22663 0.85862 0.91042 0.97619 0.89120 1.86460 1.51613 1.47425 1.51689 1.23577 0.98903 0.97403 0.97831 1.21393 1.06616 0.93940 1.00993 1.21016 0.96080 1.00059 0.92733 0.76583 0.85498 1.22880 1.21338 0.83958 0.83947 0.92092 0.91467 0.85673 0.86157 0.74529 0.84232 0.84211 0.84762 0.85369 0.86877 0.88528 0.86577 0.75083 0.86958 0.92811 0.84588 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.18 12.83 -148.98 -1.91 -4.09 16 2 C -0.07 -0.08 2.80 71.24 0.20 0.12 16 3 Si 0.76 0.14 29.88 68.60 2.05 2.19 16 4 C -0.16 -0.38 5.35 -19.85 -0.11 -0.48 16 5 C -0.06 -0.16 9.68 22.25 0.22 0.06 16 6 C -0.16 -0.61 9.99 22.37 0.22 -0.38 16 7 C 0.12 0.68 6.69 22.51 0.15 0.83 16 8 O -0.32 -1.56 10.14 -92.45 -0.94 -2.50 16 9 C 0.08 0.21 4.03 71.98 0.29 0.50 16 10 C -0.13 0.25 6.07 29.85 0.18 0.43 16 11 C 0.52 1.42 6.13 87.66 0.54 1.96 16 12 O -0.57 -6.18 14.29 -3.01 -0.04 -6.22 16 13 N -0.69 1.11 3.87 -423.92 -1.64 -0.53 16 14 C 0.19 -0.09 0.94 3.39 0.00 -0.09 16 15 C -0.08 -0.26 4.66 -19.87 -0.09 -0.36 16 16 C -0.12 -0.23 8.68 22.27 0.19 -0.04 16 17 C -0.13 -0.27 10.05 22.27 0.22 -0.04 16 18 C -0.13 -0.44 10.05 22.27 0.22 -0.22 16 19 C -0.13 -0.61 10.05 22.27 0.22 -0.39 16 20 C -0.12 -0.59 8.48 22.27 0.19 -0.40 16 21 C -0.15 0.95 7.12 31.12 0.22 1.17 16 22 C 0.09 -0.43 5.27 31.12 0.16 -0.27 16 23 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 24 O -0.56 2.31 13.10 -148.98 -1.95 0.36 16 25 C -0.14 -0.11 6.66 31.12 0.21 0.10 16 26 C -0.21 -0.93 9.04 22.37 0.20 -0.73 16 27 C -0.08 -0.21 8.66 22.25 0.19 -0.02 16 28 H 0.39 -0.45 8.70 -74.05 -0.64 -1.09 16 29 H 0.13 -0.14 7.96 -2.39 -0.02 -0.16 16 30 H -0.30 -2.25 7.11 99.48 0.71 -1.55 16 31 H -0.29 -1.25 7.01 99.48 0.70 -0.55 16 32 H 0.14 0.05 8.06 -2.91 -0.02 0.02 16 33 H 0.14 0.17 8.06 -2.91 -0.02 0.15 16 34 H 0.06 0.29 7.61 -2.39 -0.02 0.27 16 35 H 0.07 0.25 7.63 -2.39 -0.02 0.23 16 36 H 0.13 -0.75 8.14 -2.39 -0.02 -0.77 16 37 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.42 -2.87 8.67 -92.71 -0.80 -3.67 16 39 H 0.14 -0.40 6.58 -2.91 -0.02 -0.42 16 40 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 41 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 42 H 0.13 0.21 8.06 -2.91 -0.02 0.18 16 43 H 0.11 0.44 6.55 -2.91 -0.02 0.42 16 44 H 0.10 -0.85 8.10 -2.39 -0.02 -0.87 16 45 H 0.12 -0.92 7.76 -2.39 -0.02 -0.94 16 46 H 0.40 -4.96 9.12 -74.06 -0.68 -5.64 16 47 H 0.11 -0.15 6.25 -2.38 -0.01 -0.16 16 48 H 0.05 0.41 7.53 -2.39 -0.02 0.39 16 49 H 0.14 0.44 6.30 -2.91 -0.02 0.43 16 50 H 0.14 -0.09 4.84 -2.91 -0.01 -0.11 16 Total: 0.00 -22.66 406.90 -1.88 -24.55 By element: Atomic # 1 Polarization: -14.42 SS G_CDS: -1.09 Total: -15.51 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 3.64 Total: 1.75 kcal Atomic # 7 Polarization: 1.11 SS G_CDS: -1.64 Total: -0.53 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -4.84 Total: -12.45 kcal Atomic # 14 Polarization: 0.14 SS G_CDS: 2.05 Total: 2.19 kcal Total: -22.66 -1.88 -24.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_4549602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.174 kcal (2) G-P(sol) polarization free energy of solvation -22.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds