Wall clock time and date at job start Sat Mar 6 2021 23:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86294 * 109.47278 * 2 1 4 4 C 1.50706 * 109.47076 * 120.00530 * 2 1 3 5 5 C 1.38245 * 119.96666 * 244.99948 * 4 2 1 6 6 C 1.38288 * 120.11039 * 180.02562 * 5 4 2 7 7 C 1.38124 * 120.05630 * 359.95814 * 6 5 4 8 8 C 1.38756 * 119.94190 * 0.02562 * 7 6 5 9 9 O 1.35901 * 120.05645 * 180.02562 * 8 7 6 10 10 C 1.42900 * 116.99771 * 359.97438 * 9 8 7 11 11 C 1.53003 * 109.46963 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47038 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99823 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99696 * 180.02562 * 12 11 10 15 15 C 1.46510 * 119.99591 * 184.77714 * 14 12 11 16 16 C 1.50694 * 112.84796 * 65.43966 * 15 14 12 17 17 C 1.38234 * 120.00234 * 194.32495 * 16 15 14 18 18 C 1.38236 * 120.00555 * 179.78998 * 17 16 15 19 19 C 1.38234 * 119.99493 * 0.44030 * 18 17 16 20 20 C 1.38238 * 120.00351 * 359.81587 * 19 18 17 21 21 C 1.38237 * 120.00117 * 14.60207 * 16 15 14 22 22 C 1.53778 * 113.61397 * 294.24439 * 15 14 12 23 23 C 1.54052 * 86.98533 * 270.83911 * 22 15 14 24 24 H 1.09001 * 113.62176 * 220.02632 * 23 22 15 25 25 O 1.42900 * 113.68879 * 89.12700 * 23 22 15 26 26 C 1.53779 * 113.61317 * 196.63526 * 15 14 12 27 27 C 1.38160 * 119.97246 * 65.24874 * 4 2 1 28 28 H 0.96701 * 113.99291 * 300.00018 * 1 2 3 29 29 H 1.08999 * 109.47094 * 239.99742 * 2 1 3 30 30 H 1.48501 * 110.00284 * 300.00129 * 3 2 1 31 31 H 1.48497 * 109.99882 * 61.32378 * 3 2 1 32 32 H 1.08000 * 119.94743 * 359.97438 * 5 4 2 33 33 H 1.07998 * 119.97664 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.03367 * 180.02562 * 7 6 5 35 35 H 1.08994 * 109.47415 * 60.00318 * 10 9 8 36 36 H 1.08996 * 109.47592 * 300.00135 * 10 9 8 37 37 H 1.09000 * 109.47225 * 60.00499 * 11 10 9 38 38 H 1.08998 * 109.47455 * 300.00149 * 11 10 9 39 39 H 0.96994 * 120.00266 * 5.05540 * 14 12 11 40 40 H 1.08004 * 119.99768 * 0.02562 * 17 16 15 41 41 H 1.08001 * 120.00113 * 180.27553 * 18 17 16 42 42 H 1.07998 * 119.99820 * 179.83192 * 19 18 17 43 43 H 1.07993 * 119.99881 * 180.02562 * 20 19 18 44 44 H 1.07997 * 119.99935 * 359.97341 * 21 16 15 45 45 H 1.08998 * 113.61600 * 25.43225 * 22 15 14 46 46 H 1.08994 * 113.61516 * 156.33686 * 22 15 14 47 47 H 0.96694 * 114.00040 * 82.47658 * 25 23 22 48 48 H 1.08996 * 113.61446 * 203.66871 * 26 15 14 49 49 H 1.09001 * 113.61344 * 334.56780 * 26 15 14 50 50 H 1.07999 * 120.03509 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.6388 -0.0118 2.1909 6 6 3.1015 -0.6609 3.3209 7 6 2.8572 -2.0095 3.4929 8 6 2.1471 -2.7129 2.5304 9 8 1.9049 -4.0397 2.6976 10 6 2.4113 -4.6466 3.8881 11 6 2.0436 -6.1318 3.8994 12 6 2.5770 -6.7717 5.1552 13 8 3.1904 -6.1055 5.9618 14 7 2.3724 -8.0845 5.3818 15 6 2.7985 -8.6842 6.6488 16 6 2.0387 -8.1482 7.8346 17 6 2.5051 -8.3777 9.1155 18 6 1.8105 -7.8823 10.2032 19 6 0.6446 -7.1652 10.0104 20 6 0.1753 -6.9401 8.7297 21 6 0.8723 -7.4319 7.6419 22 6 4.3236 -8.6897 6.8455 23 6 4.3286 -10.0568 6.1353 24 1 5.0156 -10.7772 6.5795 25 8 4.4616 -9.9656 4.7155 26 6 2.8745 -10.2196 6.6087 27 6 1.6890 -2.0607 1.3951 28 1 -0.3932 0.4417 0.7651 29 1 1.7924 -0.5139 -0.8899 30 1 1.5616 2.4679 -1.2085 31 1 1.5881 2.4584 1.2243 32 1 2.8310 1.0426 2.0582 33 1 3.6543 -0.1131 4.0696 34 1 3.2184 -2.5160 4.3757 35 1 1.9754 -4.1574 4.7590 36 1 3.4957 -4.5410 3.9169 37 1 2.4799 -6.6208 3.0285 38 1 0.9592 -6.2379 3.8704 39 1 1.9467 -8.6330 4.7045 40 1 3.4143 -8.9409 9.2663 41 1 2.1774 -8.0579 11.2037 42 1 0.1005 -6.7804 10.8602 43 1 -0.7353 -6.3795 8.5791 44 1 0.5057 -7.2560 6.6414 45 1 4.8384 -7.9057 6.2902 46 1 4.6288 -8.7396 7.8907 47 1 5.3739 -9.8632 4.4117 48 1 2.7842 -10.6870 7.5892 49 1 2.2202 -10.6699 5.8622 50 1 1.1402 -2.6071 0.6424 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_4549614.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:51:05 Heat of formation + Delta-G solvation = -58.813960 kcal Electronic energy + Delta-G solvation = -33053.697269 eV Core-core repulsion = 28593.147908 eV Total energy + Delta-G solvation = -4460.549360 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.15234 -41.32786 -39.98932 -39.29226 -39.06477 -37.40177 -36.22359 -34.23545 -33.09757 -32.51490 -31.76434 -31.67203 -30.79719 -27.15632 -26.95792 -26.26056 -24.92283 -23.71805 -23.51417 -22.59534 -22.07493 -21.38341 -20.29041 -19.41537 -18.66383 -18.23496 -17.91021 -17.66655 -17.47584 -17.21394 -17.10294 -16.79060 -16.36072 -16.23449 -15.91287 -15.71392 -15.51871 -15.29354 -15.10997 -14.93618 -14.66103 -14.43883 -14.33403 -14.14650 -14.03457 -13.92098 -13.57351 -13.33429 -13.24406 -12.96938 -12.94409 -12.86770 -12.47550 -12.41131 -12.05402 -11.98376 -11.97815 -11.85601 -11.58424 -11.52885 -11.08264 -10.76418 -10.66527 -10.09031 -9.98380 -9.86403 -9.59862 -9.30698 -4.90764 0.16820 0.36285 0.37802 0.45317 1.28623 1.54129 1.61197 1.65913 1.95592 2.42338 2.62760 2.76628 3.09812 3.40174 3.48234 3.51499 3.59920 3.61460 3.68887 3.81427 3.82737 3.84875 3.91728 4.05158 4.07775 4.08039 4.20696 4.21646 4.24503 4.34492 4.39559 4.52372 4.58038 4.60421 4.61322 4.62758 4.67404 4.72825 4.78333 4.87421 4.95072 4.96708 4.99269 5.04362 5.11878 5.23038 5.35094 5.39700 5.41018 5.52338 5.58451 5.67506 5.72473 6.05966 6.29710 6.45949 6.46460 6.82393 7.17827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.087 4.087 3 Si 0.777 3.223 4 C -0.080 4.080 5 C -0.158 4.158 6 C -0.075 4.075 7 C -0.210 4.210 8 C 0.117 3.883 9 O -0.325 6.325 10 C 0.080 3.920 11 C -0.135 4.135 12 C 0.524 3.476 13 O -0.567 6.567 14 N -0.689 5.689 15 C 0.190 3.810 16 C -0.081 4.081 17 C -0.122 4.122 18 C -0.125 4.125 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.168 4.168 23 C 0.086 3.914 24 H 0.092 0.908 25 O -0.562 6.562 26 C -0.119 4.119 27 C -0.141 4.141 28 H 0.386 0.614 29 H 0.125 0.875 30 H -0.302 1.302 31 H -0.280 1.280 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.416 0.584 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.115 0.885 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.396 0.604 48 H 0.124 0.876 49 H 0.089 0.911 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 -3.759 1.629 5.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.196 4.196 3 Si 0.682 3.318 4 C -0.081 4.081 5 C -0.175 4.175 6 C -0.093 4.093 7 C -0.229 4.229 8 C 0.072 3.928 9 O -0.239 6.239 10 C 0.004 3.996 11 C -0.174 4.174 12 C 0.312 3.688 13 O -0.445 6.445 14 N -0.340 5.340 15 C 0.103 3.897 16 C -0.082 4.082 17 C -0.140 4.140 18 C -0.143 4.143 19 C -0.152 4.152 20 C -0.151 4.151 21 C -0.141 4.141 22 C -0.206 4.206 23 C 0.027 3.973 24 H 0.110 0.890 25 O -0.370 6.370 26 C -0.156 4.156 27 C -0.160 4.160 28 H 0.235 0.765 29 H 0.143 0.857 30 H -0.230 1.230 31 H -0.206 1.206 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.254 0.746 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.133 0.867 45 H 0.080 0.920 46 H 0.124 0.876 47 H 0.246 0.754 48 H 0.142 0.858 49 H 0.107 0.893 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.790 -2.997 1.547 4.377 hybrid contribution -0.809 -0.171 0.418 0.926 sum 1.981 -3.168 1.965 4.222 Atomic orbital electron populations 1.86578 1.18443 1.80496 1.50103 1.25361 0.83521 1.12376 0.98306 0.93848 0.90250 0.71301 0.76398 1.20158 0.97902 0.93200 0.96823 1.21208 1.00809 1.00797 0.94703 1.21237 0.97253 0.93348 0.97475 1.21536 1.04200 0.96601 1.00571 1.19155 0.95798 0.82913 0.94973 1.85956 1.74648 1.20429 1.42886 1.22371 0.99136 0.92752 0.85338 1.21442 1.05064 0.93701 0.97222 1.20448 0.78863 0.82177 0.87356 1.90738 1.41707 1.63374 1.48725 1.45405 1.61815 1.08820 1.18006 1.19974 0.93860 0.93962 0.81885 1.19964 0.95268 0.98404 0.94574 1.21183 1.00498 1.00773 0.91518 1.21441 0.95338 0.97735 0.99780 1.21445 0.97135 0.99202 0.97466 1.21378 1.00487 1.00134 0.93096 1.21040 0.95626 0.98460 0.98935 1.24147 0.94718 0.99125 1.02636 1.22756 0.97664 0.95290 0.81606 0.89049 1.86374 1.34421 1.95976 1.20188 1.23458 0.96337 0.92007 1.03840 1.20347 1.03982 0.94392 0.97253 0.76457 0.85716 1.23023 1.20622 0.83519 0.83024 0.84765 0.91959 0.91571 0.85887 0.86143 0.74630 0.84137 0.84118 0.84728 0.85348 0.86700 0.91982 0.87610 0.75427 0.85830 0.89262 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.36 12.84 -148.98 -1.91 -4.27 16 2 C -0.09 -0.09 2.80 71.24 0.20 0.11 16 3 Si 0.78 -1.12 29.88 68.60 2.05 0.93 16 4 C -0.08 -0.21 5.35 -19.88 -0.11 -0.32 16 5 C -0.16 -0.09 8.67 22.28 0.19 0.10 16 6 C -0.08 -0.09 10.04 22.25 0.22 0.14 16 7 C -0.21 -0.88 9.04 22.37 0.20 -0.67 16 8 C 0.12 0.75 6.69 22.51 0.15 0.90 16 9 O -0.32 -1.98 10.14 -92.44 -0.94 -2.91 16 10 C 0.08 0.25 4.03 71.98 0.29 0.54 16 11 C -0.13 0.18 6.07 29.85 0.18 0.36 16 12 C 0.52 1.45 6.19 87.66 0.54 1.99 16 13 O -0.57 -5.98 14.44 -3.02 -0.04 -6.02 16 14 N -0.69 0.63 3.84 -423.92 -1.63 -1.00 16 15 C 0.19 -0.01 0.93 3.38 0.00 0.00 16 16 C -0.08 -0.28 4.73 -19.87 -0.09 -0.37 16 17 C -0.12 -0.23 8.77 22.27 0.20 -0.03 16 18 C -0.13 -0.26 10.05 22.27 0.22 -0.03 16 19 C -0.13 -0.43 10.05 22.27 0.22 -0.21 16 20 C -0.13 -0.60 10.05 22.27 0.22 -0.38 16 21 C -0.12 -0.62 8.81 22.27 0.20 -0.42 16 22 C -0.17 0.06 6.62 31.21 0.21 0.26 16 23 C 0.09 -0.37 5.28 31.21 0.16 -0.21 16 24 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 25 O -0.56 1.82 13.09 -148.98 -1.95 -0.14 16 26 C -0.12 0.50 7.12 31.12 0.22 0.73 16 27 C -0.14 -0.82 9.63 22.37 0.22 -0.60 16 28 H 0.39 -0.52 8.70 -74.06 -0.64 -1.16 16 29 H 0.13 -0.06 7.96 -2.39 -0.02 -0.07 16 30 H -0.30 -1.84 7.11 99.48 0.71 -1.13 16 31 H -0.28 -0.51 7.01 99.48 0.70 0.19 16 32 H 0.15 -0.55 4.84 -2.91 -0.01 -0.56 16 33 H 0.15 -0.57 8.06 -2.91 -0.02 -0.59 16 34 H 0.13 0.41 6.30 -2.91 -0.02 0.39 16 35 H 0.06 0.29 7.62 -2.39 -0.02 0.28 16 36 H 0.07 0.27 7.62 -2.39 -0.02 0.25 16 37 H 0.12 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.42 -2.04 8.66 -92.71 -0.80 -2.85 16 40 H 0.14 -0.39 6.48 -2.91 -0.02 -0.41 16 41 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 42 H 0.13 -0.06 8.06 -2.91 -0.02 -0.09 16 43 H 0.13 0.21 8.06 -2.91 -0.02 0.18 16 44 H 0.11 0.42 6.69 -2.91 -0.02 0.40 16 45 H 0.06 0.30 7.24 -2.39 -0.02 0.28 16 46 H 0.11 -0.22 6.16 -2.39 -0.01 -0.23 16 47 H 0.40 -3.64 9.12 -74.06 -0.68 -4.31 16 48 H 0.12 -0.82 7.83 -2.39 -0.02 -0.84 16 49 H 0.09 -0.40 8.09 -2.39 -0.02 -0.42 16 50 H 0.13 0.77 8.06 -2.91 -0.02 0.75 16 Total: 0.00 -21.78 407.25 -1.86 -23.63 By element: Atomic # 1 Polarization: -11.01 SS G_CDS: -1.09 Total: -12.10 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 3.66 Total: 1.88 kcal Atomic # 7 Polarization: 0.63 SS G_CDS: -1.63 Total: -1.00 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -4.84 Total: -13.34 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: 2.05 Total: 0.93 kcal Total: -21.78 -1.86 -23.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_4549614.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.180 kcal (2) G-P(sol) polarization free energy of solvation -21.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds