Wall clock time and date at job start Sat Mar 6 2021 23:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86296 * 109.47377 * 2 1 4 4 C 1.50694 * 109.47332 * 239.99314 * 2 1 3 5 5 C 1.38242 * 119.97197 * 120.02235 * 4 2 1 6 6 C 1.38287 * 120.11538 * 179.97438 * 5 4 2 7 7 C 1.38122 * 120.05467 * 359.77782 * 6 5 4 8 8 C 1.38759 * 119.94280 * 0.49916 * 7 6 5 9 9 O 1.35902 * 120.05653 * 179.74697 * 8 7 6 10 10 C 1.42898 * 116.99603 * 359.72844 * 9 8 7 11 11 C 1.53005 * 109.46803 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47275 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46935 * 179.97438 * 12 11 10 14 14 O 1.21278 * 120.00570 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99626 * 179.72290 * 13 12 11 16 16 C 1.46502 * 120.00023 * 175.28408 * 15 13 12 17 17 C 1.50700 * 112.84721 * 65.10743 * 16 15 13 18 18 C 1.38237 * 119.99589 * 197.64507 * 17 16 15 19 19 C 1.38235 * 119.99997 * 179.80807 * 18 17 16 20 20 C 1.38242 * 119.99689 * 0.39953 * 19 18 17 21 21 C 1.38232 * 119.99811 * 359.85403 * 20 19 18 22 22 C 1.38228 * 120.00259 * 17.91543 * 17 16 15 23 23 C 1.53779 * 113.61413 * 293.90935 * 16 15 13 24 24 C 1.53783 * 87.08291 * 270.88467 * 23 16 15 25 25 H 1.09000 * 113.61447 * 220.01874 * 24 23 16 26 26 O 1.42895 * 113.61460 * 89.20142 * 24 23 16 27 27 C 1.53785 * 113.61411 * 196.30398 * 16 15 13 28 28 C 1.38164 * 119.97711 * 300.00473 * 4 2 1 29 29 H 0.96700 * 113.99299 * 60.00455 * 1 2 3 30 30 H 1.09000 * 109.46696 * 119.99670 * 2 1 3 31 31 H 1.48502 * 110.00213 * 59.99227 * 3 2 1 32 32 H 1.48494 * 110.00394 * 181.31657 * 3 2 1 33 33 H 1.08006 * 119.94311 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.97216 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.03062 * 180.27158 * 7 6 5 36 36 H 1.08993 * 109.47715 * 60.00275 * 10 9 8 37 37 H 1.09001 * 109.47303 * 299.99397 * 10 9 8 38 38 H 1.09000 * 109.47574 * 59.99492 * 11 10 9 39 39 H 1.09007 * 109.46757 * 300.00062 * 11 10 9 40 40 H 1.08994 * 109.47136 * 59.99610 * 12 11 10 41 41 H 1.09001 * 109.46503 * 299.99580 * 12 11 10 42 42 H 0.97001 * 120.00358 * 355.27967 * 15 13 12 43 43 H 1.08000 * 120.00450 * 0.02562 * 18 17 16 44 44 H 1.08000 * 120.00610 * 180.23240 * 19 18 17 45 45 H 1.07999 * 119.99353 * 179.83345 * 20 19 18 46 46 H 1.08006 * 119.99407 * 179.97438 * 21 20 19 47 47 H 1.08000 * 120.00172 * 359.97438 * 22 17 16 48 48 H 1.09004 * 113.61076 * 25.43380 * 23 16 15 49 49 H 1.08997 * 113.61728 * 156.24882 * 23 16 15 50 50 H 0.96703 * 114.00073 * 180.02562 * 26 24 23 51 51 H 1.09005 * 113.61006 * 203.66356 * 27 16 15 52 52 H 1.09000 * 113.61414 * 334.56679 * 27 16 15 53 53 H 1.08007 * 120.02646 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 2.7265 -0.0383 -2.1397 6 6 3.1896 -0.6876 -3.2695 7 6 2.8623 -2.0113 -3.4896 8 6 2.0596 -2.6866 -2.5813 9 8 1.7319 -3.9876 -2.7982 10 6 2.2439 -4.5962 -3.9854 11 6 1.7724 -6.0500 -4.0573 12 6 2.3211 -6.7019 -5.3280 13 6 1.8572 -8.1340 -5.3984 14 8 1.1571 -8.5886 -4.5187 15 7 2.2162 -8.9081 -6.4417 16 6 1.8527 -10.3272 -6.4601 17 6 0.3639 -10.5490 -6.5318 18 6 -0.1685 -11.7795 -6.1948 19 6 -1.5345 -11.9819 -6.2567 20 6 -2.3675 -10.9563 -6.6634 21 6 -1.8345 -9.7275 -7.0054 22 6 -0.4689 -9.5239 -6.9397 23 6 2.5471 -11.1551 -5.3659 24 6 3.6893 -11.3798 -6.3708 25 1 4.0953 -12.3911 -6.3513 26 8 4.7030 -10.3739 -6.3194 27 6 2.6488 -11.1537 -7.4840 28 6 1.5973 -2.0333 -1.4484 29 1 -0.3932 0.4417 -0.7651 30 1 1.7923 -0.5138 0.8900 31 1 1.5615 2.4679 1.2084 32 1 3.5346 1.7703 -0.0321 33 1 2.9865 0.9957 -1.9676 34 1 3.8110 -0.1604 -3.9782 35 1 3.2278 -2.5193 -4.3698 36 1 3.3333 -4.5677 -3.9676 37 1 1.8804 -4.0533 -4.8579 38 1 0.6829 -6.0782 -4.0753 39 1 2.1355 -6.5932 -3.1847 40 1 3.4105 -6.6737 -5.3095 41 1 1.9583 -6.1588 -6.2007 42 1 2.7151 -8.5256 -7.1804 43 1 0.4825 -12.5816 -5.8799 44 1 -1.9509 -12.9420 -5.9899 45 1 -3.4345 -11.1153 -6.7143 46 1 -2.4853 -8.9264 -7.3235 47 1 -0.0526 -8.5638 -7.2067 48 1 2.8406 -10.5689 -4.4951 49 1 2.0108 -12.0664 -5.1015 50 1 5.4240 -10.5095 -6.9494 51 1 2.1408 -12.0654 -7.7986 52 1 3.0243 -10.5664 -8.3219 53 1 0.9766 -2.5583 -0.7373 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_4549616.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:51:10 Heat of formation + Delta-G solvation = -66.402224 kcal Electronic energy + Delta-G solvation = -34553.072467 eV Core-core repulsion = 29936.656435 eV Total energy + Delta-G solvation = -4616.416031 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.08803 -41.28082 -39.93272 -39.26976 -39.12839 -37.30777 -36.22254 -34.89356 -33.94466 -32.45521 -31.80410 -31.65874 -31.20812 -28.45406 -27.00864 -26.84528 -25.64907 -23.82562 -23.63511 -23.36557 -22.43083 -21.87571 -21.35330 -20.22424 -19.21837 -18.67279 -18.16107 -17.84380 -17.76752 -17.44655 -17.14794 -17.01199 -16.82188 -16.42079 -16.30125 -16.08482 -15.61512 -15.43845 -15.38888 -15.22138 -14.85743 -14.70081 -14.53199 -14.39023 -14.19608 -14.17212 -13.97883 -13.61326 -13.41217 -13.27026 -13.12194 -13.04891 -12.91748 -12.74287 -12.35983 -12.31385 -12.25865 -12.22011 -11.97933 -11.92204 -11.64097 -11.60544 -11.43025 -10.94631 -10.83528 -10.51479 -10.02783 -9.92177 -9.84696 -9.56682 -9.25573 -4.99402 0.20735 0.39914 0.40006 0.47224 1.29230 1.64534 1.67048 1.88983 1.98126 2.35151 2.67817 2.78255 3.12228 3.44664 3.49204 3.60052 3.63959 3.66871 3.72520 3.80495 3.84914 3.86097 3.95878 4.01743 4.09014 4.10388 4.21476 4.21652 4.24327 4.32482 4.36997 4.38925 4.42305 4.52022 4.58183 4.60961 4.62249 4.66920 4.69386 4.80891 4.88349 4.95293 4.96750 4.97885 4.99221 5.06421 5.12747 5.14180 5.27975 5.37924 5.43799 5.44462 5.53764 5.59427 5.74056 5.76564 6.07788 6.41519 6.58102 6.73749 6.91435 7.32272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.085 4.085 3 Si 0.795 3.205 4 C -0.085 4.085 5 C -0.160 4.160 6 C -0.071 4.071 7 C -0.206 4.206 8 C 0.115 3.885 9 O -0.340 6.340 10 C 0.060 3.940 11 C -0.098 4.098 12 C -0.127 4.127 13 C 0.510 3.490 14 O -0.573 6.573 15 N -0.690 5.690 16 C 0.190 3.810 17 C -0.078 4.078 18 C -0.126 4.126 19 C -0.127 4.127 20 C -0.136 4.136 21 C -0.134 4.134 22 C -0.117 4.117 23 C -0.142 4.142 24 C 0.089 3.911 25 H 0.090 0.910 26 O -0.562 6.562 27 C -0.147 4.147 28 C -0.153 4.153 29 H 0.395 0.605 30 H 0.101 0.899 31 H -0.300 1.300 32 H -0.281 1.281 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.417 0.583 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.129 0.871 47 H 0.117 0.883 48 H 0.051 0.949 49 H 0.110 0.890 50 H 0.399 0.601 51 H 0.113 0.887 52 H 0.098 0.902 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 0.850 -10.764 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.194 4.194 3 Si 0.700 3.300 4 C -0.085 4.085 5 C -0.177 4.177 6 C -0.089 4.089 7 C -0.225 4.225 8 C 0.070 3.930 9 O -0.254 6.254 10 C -0.015 4.015 11 C -0.136 4.136 12 C -0.167 4.167 13 C 0.298 3.702 14 O -0.452 6.452 15 N -0.342 5.342 16 C 0.102 3.898 17 C -0.079 4.079 18 C -0.144 4.144 19 C -0.145 4.145 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.135 4.135 23 C -0.180 4.180 24 C 0.030 3.970 25 H 0.108 0.892 26 O -0.370 6.370 27 C -0.185 4.185 28 C -0.172 4.172 29 H 0.245 0.755 30 H 0.119 0.881 31 H -0.229 1.229 32 H -0.208 1.208 33 H 0.166 0.834 34 H 0.178 0.822 35 H 0.170 0.830 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.254 0.746 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.152 0.848 46 H 0.147 0.853 47 H 0.135 0.865 48 H 0.070 0.930 49 H 0.128 0.872 50 H 0.249 0.751 51 H 0.132 0.868 52 H 0.117 0.883 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.721 0.896 -8.611 9.861 hybrid contribution 0.262 -0.931 -0.071 0.970 sum 4.983 -0.035 -8.682 10.010 Atomic orbital electron populations 1.86472 1.17355 1.82310 1.50430 1.25415 0.85317 1.11841 0.96823 0.93491 0.77725 0.74257 0.84538 1.20219 0.97824 0.93410 0.97048 1.21195 1.00387 1.00774 0.95385 1.21318 0.97319 0.93463 0.96812 1.21604 1.02621 0.96933 1.01302 1.19221 0.95250 0.83535 0.94986 1.86056 1.71659 1.22971 1.44726 1.22970 0.99506 0.93091 0.85906 1.21113 1.01461 0.92970 0.98087 1.21512 1.04285 0.90992 0.99872 1.21047 0.79009 0.89016 0.81109 1.90750 1.38397 1.75911 1.40121 1.45427 1.57669 1.08098 1.22998 1.19966 0.89192 0.81987 0.98620 1.19963 0.95099 0.94149 0.98681 1.21194 0.95741 0.97133 1.00370 1.21423 0.93683 0.99946 0.99471 1.21432 1.00776 0.93548 0.99664 1.21386 0.95460 0.97986 1.00345 1.21011 0.93703 0.98762 1.00036 1.23581 0.96444 1.00767 0.97211 1.22684 0.87625 0.91976 0.94717 0.89187 1.86458 1.36045 1.50209 1.64329 1.24020 0.96651 1.00747 0.97085 1.20315 1.04265 0.94993 0.97628 0.75463 0.88129 1.22855 1.20751 0.83367 0.82187 0.82968 0.90084 0.89655 0.92191 0.92610 0.86045 0.85578 0.74555 0.84436 0.84321 0.84787 0.85264 0.86513 0.93045 0.87153 0.75072 0.86836 0.88345 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.09 12.77 -148.98 -1.90 -3.99 16 2 C -0.09 -0.22 2.82 71.23 0.20 -0.02 16 3 Si 0.79 -1.07 29.79 68.60 2.04 0.97 16 4 C -0.08 -0.29 5.39 -19.88 -0.11 -0.40 16 5 C -0.16 0.10 8.67 22.28 0.19 0.29 16 6 C -0.07 0.15 10.04 22.25 0.22 0.37 16 7 C -0.21 -0.06 9.04 22.37 0.20 0.14 16 8 C 0.12 0.72 6.69 22.51 0.15 0.87 16 9 O -0.34 -2.65 10.14 -92.45 -0.94 -3.58 16 10 C 0.06 -0.03 4.74 71.98 0.34 0.31 16 11 C -0.10 -0.24 4.87 30.60 0.15 -0.09 16 12 C -0.13 0.47 5.70 29.85 0.17 0.64 16 13 C 0.51 1.91 6.41 87.66 0.56 2.47 16 14 O -0.57 -8.04 14.48 -3.02 -0.04 -8.08 16 15 N -0.69 0.83 3.81 -423.92 -1.62 -0.78 16 16 C 0.19 0.11 0.92 3.38 0.00 0.11 16 17 C -0.08 -0.37 4.51 -19.87 -0.09 -0.46 16 18 C -0.13 -0.48 8.94 22.27 0.20 -0.28 16 19 C -0.13 -0.50 10.05 22.27 0.22 -0.28 16 20 C -0.14 -0.65 10.05 22.27 0.22 -0.43 16 21 C -0.13 -0.77 10.05 22.27 0.22 -0.55 16 22 C -0.12 -0.71 8.65 22.27 0.19 -0.52 16 23 C -0.14 -0.31 6.66 31.12 0.21 -0.10 16 24 C 0.09 -0.38 5.28 31.21 0.16 -0.21 16 25 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 26 O -0.56 2.25 13.10 -148.98 -1.95 0.30 16 27 C -0.15 0.84 7.15 31.21 0.22 1.06 16 28 C -0.15 -1.18 9.55 22.36 0.21 -0.97 16 29 H 0.40 -1.90 8.70 -74.06 -0.64 -2.55 16 30 H 0.10 0.46 7.96 -2.39 -0.02 0.44 16 31 H -0.30 -1.85 7.11 99.48 0.71 -1.15 16 32 H -0.28 -0.69 7.11 99.48 0.71 0.02 16 33 H 0.15 -0.80 4.87 -2.91 -0.01 -0.82 16 34 H 0.16 -1.33 8.06 -2.91 -0.02 -1.35 16 35 H 0.15 -0.77 6.30 -2.91 -0.02 -0.79 16 36 H 0.08 -0.33 7.65 -2.39 -0.02 -0.35 16 37 H 0.09 -0.41 7.67 -2.39 -0.02 -0.43 16 38 H 0.06 0.41 8.10 -2.39 -0.02 0.39 16 39 H 0.06 0.43 8.10 -2.38 -0.02 0.41 16 40 H 0.12 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H 0.13 -1.23 8.14 -2.39 -0.02 -1.24 16 42 H 0.42 -3.03 8.66 -92.71 -0.80 -3.83 16 43 H 0.14 -0.08 6.29 -2.91 -0.02 -0.10 16 44 H 0.14 -0.05 8.06 -2.91 -0.02 -0.07 16 45 H 0.13 0.14 8.06 -2.91 -0.02 0.11 16 46 H 0.13 0.32 8.06 -2.91 -0.02 0.30 16 47 H 0.12 0.47 6.89 -2.91 -0.02 0.45 16 48 H 0.05 0.48 7.57 -2.38 -0.02 0.46 16 49 H 0.11 0.04 6.02 -2.39 -0.01 0.02 16 50 H 0.40 -5.03 9.12 -74.06 -0.68 -5.71 16 51 H 0.11 -0.78 7.93 -2.38 -0.02 -0.80 16 52 H 0.10 -0.85 8.09 -2.39 -0.02 -0.87 16 53 H 0.11 1.18 8.06 -2.91 -0.02 1.16 16 Total: 0.00 -29.47 429.10 -1.66 -31.12 By element: Atomic # 1 Polarization: -16.82 SS G_CDS: -1.12 Total: -17.94 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 3.87 Total: 1.99 kcal Atomic # 7 Polarization: 0.83 SS G_CDS: -1.62 Total: -0.78 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -4.83 Total: -15.35 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: 2.04 Total: 0.97 kcal Total: -29.47 -1.66 -31.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_4549616.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.281 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds