Wall clock time and date at job start Sat Mar 6 2021 23:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86297 * 109.47157 * 2 1 4 4 C 1.50700 * 109.46816 * 239.99845 * 2 1 3 5 5 C 1.38272 * 119.93865 * 119.72788 * 4 2 1 6 6 C 1.38149 * 120.05189 * 179.72190 * 5 4 2 7 7 C 1.38732 * 119.94225 * 0.57328 * 6 5 4 8 8 O 1.35903 * 120.05433 * 179.67971 * 7 6 5 9 9 C 1.42901 * 117.00103 * 0.02562 * 8 7 6 10 10 C 1.50687 * 109.47306 * 179.97438 * 9 8 7 11 11 C 1.36425 * 125.80137 * 89.71556 * 10 9 8 12 12 C 1.47377 * 127.19033 * 0.02562 * 11 10 9 13 13 O 1.21613 * 119.99792 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99730 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99692 * 175.34126 * 14 12 11 16 16 C 1.50697 * 112.85071 * 294.39863 * 15 14 12 17 17 C 1.38240 * 120.00322 * 161.80085 * 16 15 14 18 18 C 1.38236 * 120.00197 * 179.74572 * 17 16 15 19 19 C 1.38235 * 119.99777 * 0.54343 * 18 17 16 20 20 C 1.38237 * 120.00157 * 359.70436 * 19 18 17 21 21 C 1.38233 * 119.99851 * 0.02562 * 20 19 18 22 22 C 1.53784 * 113.61474 * 163.19961 * 15 14 12 23 23 C 1.54054 * 86.98551 * 270.83695 * 22 15 14 24 24 H 1.08996 * 113.69501 * 220.00878 * 23 22 15 25 25 O 1.42900 * 113.61010 * 89.11606 * 23 22 15 26 26 C 1.53784 * 87.07775 * 334.56842 * 23 22 15 27 27 C 1.47026 * 105.61480 * 179.87099 * 11 10 9 28 28 C 1.34171 * 105.95239 * 0.38970 * 27 11 10 29 29 O 1.33652 * 125.80584 * 270.02391 * 10 9 8 30 30 C 1.38734 * 119.88837 * 359.70046 * 7 6 5 31 31 C 1.38138 * 119.94647 * 0.02562 * 30 7 6 32 32 H 0.96696 * 113.99656 * 60.00182 * 1 2 3 33 33 H 1.09006 * 109.46988 * 120.00205 * 2 1 3 34 34 H 1.48500 * 110.00159 * 298.68199 * 3 2 1 35 35 H 1.48499 * 109.99918 * 60.00203 * 3 2 1 36 36 H 1.07993 * 119.97391 * 359.97438 * 5 4 2 37 37 H 1.08000 * 120.02814 * 180.29604 * 6 5 4 38 38 H 1.09006 * 109.46903 * 300.00343 * 9 8 7 39 39 H 1.09003 * 109.47218 * 59.99687 * 9 8 7 40 40 H 0.97001 * 120.00260 * 355.33738 * 14 12 11 41 41 H 1.08000 * 119.99451 * 359.97438 * 17 16 15 42 42 H 1.07996 * 119.99843 * 180.27230 * 18 17 16 43 43 H 1.08001 * 120.00003 * 179.72803 * 19 18 17 44 44 H 1.07998 * 120.00350 * 179.97438 * 20 19 18 45 45 H 1.08004 * 119.99925 * 179.97438 * 21 20 19 46 46 H 1.09000 * 113.60910 * 25.43414 * 22 15 14 47 47 H 1.09007 * 113.61323 * 156.33388 * 22 15 14 48 48 H 0.96697 * 114.00315 * 82.50443 * 25 23 22 49 49 H 1.08997 * 113.61109 * 270.87870 * 26 23 22 50 50 H 1.08997 * 113.61347 * 139.97401 * 26 23 22 51 51 H 1.07996 * 127.02032 * 180.11460 * 27 11 10 52 52 H 1.08004 * 125.43398 * 179.72077 * 28 27 11 53 53 H 1.08001 * 120.02553 * 180.02562 * 30 7 6 54 54 H 1.08000 * 119.97669 * 180.02562 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7215 -0.0357 -2.1427 6 6 3.1880 -0.6863 -3.2686 7 6 2.8531 -2.0144 -3.4895 8 8 3.3053 -2.6547 -4.5996 9 6 4.1219 -1.8996 -5.4968 10 6 4.5264 -2.7682 -6.6598 11 6 3.8345 -2.9126 -7.8266 12 6 2.5648 -2.2617 -8.1958 13 8 2.0228 -1.5006 -7.4173 14 7 2.0044 -2.5100 -9.3962 15 6 0.6932 -1.9444 -9.7233 16 6 -0.4137 -2.4971 -8.8629 17 6 -1.6178 -1.8246 -8.7692 18 6 -2.6350 -2.3344 -7.9841 19 6 -2.4441 -3.5108 -7.2838 20 6 -1.2383 -4.1807 -7.3734 21 6 -0.2231 -3.6738 -8.1629 22 6 0.3722 -1.9629 -11.2272 23 6 1.0472 -0.5804 -11.3054 24 1 0.5327 0.1218 -11.9613 25 8 2.4531 -0.6432 -11.5534 26 6 0.6908 -0.4096 -9.8193 27 6 4.6221 -3.8503 -8.6403 28 6 5.6877 -4.1804 -7.8949 29 8 5.6211 -3.5325 -6.7213 30 6 2.0554 -2.6874 -2.5755 31 6 1.5962 -2.0340 -1.4484 32 1 -0.3932 0.4417 -0.7651 33 1 1.7924 -0.5139 0.8900 34 1 1.5879 2.4586 -1.2242 35 1 1.5616 2.4678 1.2085 36 1 2.9776 0.9996 -1.9729 37 1 3.8091 -0.1603 -3.9784 38 1 3.5606 -1.0399 -5.8628 39 1 5.0140 -1.5550 -4.9736 40 1 2.4693 -3.0630 -10.0434 41 1 -1.7651 -0.9028 -9.3124 42 1 -3.5772 -1.8112 -7.9145 43 1 -3.2373 -3.9068 -6.6669 44 1 -1.0890 -5.0996 -6.8259 45 1 0.7192 -4.1970 -8.2326 46 1 0.9018 -2.7409 -11.7771 47 1 -0.6955 -1.9406 -11.4461 48 1 2.6836 -0.7506 -12.4863 49 1 -0.2898 0.0367 -9.6540 50 1 1.4775 0.0657 -9.2334 51 1 4.3880 -4.2048 -9.6333 52 1 6.4733 -4.8595 -8.1916 53 1 1.7937 -3.7215 -2.7451 54 1 0.9756 -2.5577 -0.7363 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_4549634.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:51:24 Heat of formation + Delta-G solvation = -30.526908 kcal Electronic energy + Delta-G solvation = -41675.428328 eV Core-core repulsion = 36512.744973 eV Total energy + Delta-G solvation = -5162.683355 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.165 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -43.73291 -42.05257 -41.32561 -39.75015 -39.30842 -39.17052 -37.33357 -36.23547 -34.56774 -33.57838 -32.83874 -32.01070 -31.77700 -31.69252 -31.42152 -28.04060 -27.01119 -26.32936 -25.96570 -24.50607 -23.83225 -23.52417 -22.67145 -22.40734 -22.06772 -20.98539 -20.21351 -19.53944 -19.24408 -18.63599 -18.38756 -17.85605 -17.43572 -17.23358 -17.09328 -16.92755 -16.78072 -16.46129 -16.33736 -16.15848 -15.86977 -15.78536 -15.60048 -15.48600 -15.19949 -14.96323 -14.71298 -14.57900 -14.43119 -14.38831 -14.24312 -13.99848 -13.88698 -13.62900 -13.56107 -13.53322 -13.28196 -13.09641 -12.93821 -12.36735 -12.33802 -12.26072 -12.15295 -12.12807 -11.94819 -11.67471 -11.48500 -11.02378 -10.97261 -10.93101 -10.62380 -10.11183 -10.08567 -9.88387 -9.84423 -9.61380 -9.27416 -4.94311 -0.03353 0.23588 0.26178 0.36108 0.43533 1.03095 1.30656 1.49718 1.59155 1.93694 2.01548 2.12763 2.46049 2.60768 2.74843 3.11647 3.32956 3.40508 3.43388 3.54705 3.61784 3.65986 3.68314 3.70046 3.76220 3.82252 3.87431 3.91168 4.01252 4.05573 4.08720 4.18847 4.25790 4.33802 4.38693 4.44258 4.53114 4.53769 4.58616 4.62621 4.65932 4.68022 4.78513 4.79946 4.85371 4.91976 4.95143 4.97358 5.02486 5.10225 5.11148 5.22097 5.24953 5.38258 5.43381 5.50625 5.56420 5.65660 5.70467 5.87295 6.04080 6.22740 6.46186 6.46992 6.90810 7.16601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.077 4.077 3 Si 0.765 3.235 4 C -0.157 4.157 5 C -0.076 4.076 6 C -0.206 4.206 7 C 0.126 3.874 8 O -0.322 6.322 9 C 0.137 3.863 10 C 0.038 3.962 11 C -0.222 4.222 12 C 0.588 3.412 13 O -0.559 6.559 14 N -0.679 5.679 15 C 0.192 3.808 16 C -0.080 4.080 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.133 4.133 21 C -0.120 4.120 22 C -0.148 4.148 23 C 0.088 3.912 24 H 0.094 0.906 25 O -0.564 6.564 26 C -0.140 4.140 27 C -0.198 4.198 28 C -0.011 4.011 29 O -0.177 6.177 30 C -0.163 4.163 31 C -0.057 4.057 32 H 0.385 0.615 33 H 0.127 0.873 34 H -0.286 1.286 35 H -0.300 1.300 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.413 0.587 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.125 0.875 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.118 0.882 48 H 0.398 0.602 49 H 0.114 0.886 50 H 0.055 0.945 51 H 0.188 0.812 52 H 0.253 0.747 53 H 0.131 0.869 54 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -1.232 -7.689 8.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.186 4.186 3 Si 0.670 3.330 4 C -0.158 4.158 5 C -0.093 4.093 6 C -0.225 4.225 7 C 0.081 3.919 8 O -0.236 6.236 9 C 0.063 3.937 10 C -0.015 4.015 11 C -0.226 4.226 12 C 0.377 3.623 13 O -0.439 6.439 14 N -0.330 5.330 15 C 0.105 3.895 16 C -0.081 4.081 17 C -0.139 4.139 18 C -0.142 4.142 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.138 4.138 22 C -0.186 4.186 23 C 0.029 3.971 24 H 0.112 0.888 25 O -0.372 6.372 26 C -0.178 4.178 27 C -0.217 4.217 28 C -0.076 4.076 29 O -0.072 6.072 30 C -0.181 4.181 31 C -0.075 4.075 32 H 0.234 0.766 33 H 0.145 0.855 34 H -0.213 1.213 35 H -0.228 1.228 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.251 0.749 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.143 0.857 45 H 0.127 0.873 46 H 0.115 0.885 47 H 0.136 0.864 48 H 0.249 0.751 49 H 0.132 0.868 50 H 0.073 0.927 51 H 0.205 0.795 52 H 0.269 0.731 53 H 0.149 0.851 54 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.902 -0.356 -5.820 6.514 hybrid contribution -0.905 -0.619 -1.342 1.733 sum 1.997 -0.974 -7.162 7.499 Atomic orbital electron populations 1.86556 1.18682 1.80352 1.50086 1.25177 0.83281 1.11671 0.98457 0.94153 0.90372 0.72116 0.76321 1.20281 1.01896 0.95302 0.98313 1.21012 0.95670 0.99977 0.92651 1.21399 1.06153 0.93764 1.01168 1.19182 0.94579 0.91876 0.86287 1.86051 1.65274 1.40607 1.31671 1.21096 0.95307 0.91171 0.86119 1.22015 0.87116 0.96151 0.96178 1.21436 0.98470 1.05587 0.97155 1.17328 0.83123 0.80235 0.81656 1.90775 1.64128 1.37337 1.51650 1.45136 1.19092 1.52786 1.16010 1.19989 0.80819 0.93609 0.95088 1.19961 0.95103 0.94989 0.98071 1.21198 0.92679 1.00141 0.99886 1.21436 0.99821 0.96233 0.96750 1.21422 0.97645 0.96082 0.99916 1.21341 0.94033 1.00621 0.99084 1.20974 0.98675 0.96609 0.97557 1.24053 1.03663 0.99423 0.91410 1.22724 0.82228 0.96040 0.96098 0.88816 1.86486 1.21674 1.96020 1.33055 1.23583 1.02880 0.94992 0.96315 1.23220 0.95423 1.00410 1.02648 1.24899 1.02012 0.98495 0.82212 1.83786 1.38839 1.46832 1.37758 1.20609 1.01197 1.01372 0.94944 1.20934 0.96923 0.93893 0.95724 0.76628 0.85517 1.21273 1.22826 0.83357 0.83673 0.87879 0.88097 0.74928 0.84040 0.84023 0.84715 0.85675 0.87343 0.88543 0.86379 0.75143 0.86752 0.92653 0.79451 0.73107 0.85081 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.81 12.77 -148.98 -1.90 -4.71 16 2 C -0.08 -0.15 2.82 71.24 0.20 0.05 16 3 Si 0.76 0.13 29.78 68.60 2.04 2.17 16 4 C -0.16 -0.60 5.39 -19.85 -0.11 -0.71 16 5 C -0.08 -0.23 8.66 22.26 0.19 -0.04 16 6 C -0.21 -1.11 9.04 22.37 0.20 -0.91 16 7 C 0.13 1.16 6.69 22.51 0.15 1.31 16 8 O -0.32 -3.60 10.12 -92.46 -0.94 -4.53 16 9 C 0.14 0.96 4.73 71.23 0.34 1.30 16 10 C 0.04 0.28 7.00 25.26 0.18 0.45 16 11 C -0.22 -1.36 6.31 -18.99 -0.12 -1.48 16 12 C 0.59 5.13 6.39 86.65 0.55 5.68 16 13 O -0.56 -8.60 13.40 -4.07 -0.05 -8.66 16 14 N -0.68 -1.75 3.79 -427.19 -1.62 -3.37 16 15 C 0.19 0.38 0.92 3.39 0.00 0.38 16 16 C -0.08 -0.46 4.68 -19.87 -0.09 -0.55 16 17 C -0.12 -0.46 8.97 22.27 0.20 -0.26 16 18 C -0.12 -0.49 10.05 22.27 0.22 -0.27 16 19 C -0.13 -0.71 10.05 22.27 0.22 -0.49 16 20 C -0.13 -0.98 10.05 22.27 0.22 -0.76 16 21 C -0.12 -0.97 8.92 22.27 0.20 -0.78 16 22 C -0.15 0.71 7.16 31.21 0.22 0.93 16 23 C 0.09 -0.30 5.28 31.21 0.16 -0.14 16 24 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 25 O -0.56 1.29 13.09 -148.98 -1.95 -0.66 16 26 C -0.14 -0.38 6.58 31.12 0.20 -0.17 16 27 C -0.20 0.29 10.60 23.65 0.25 0.54 16 28 C -0.01 0.03 12.03 66.89 0.80 0.83 16 29 O -0.18 -0.74 10.52 4.48 0.05 -0.69 16 30 C -0.16 -1.32 9.99 22.36 0.22 -1.10 16 31 C -0.06 -0.32 9.60 22.25 0.21 -0.10 16 32 H 0.38 0.10 8.70 -74.06 -0.64 -0.54 16 33 H 0.13 -0.02 7.96 -2.38 -0.02 -0.04 16 34 H -0.29 -1.27 7.11 99.48 0.71 -0.56 16 35 H -0.30 -2.22 7.11 99.48 0.71 -1.51 16 36 H 0.15 -0.25 4.87 -2.91 -0.01 -0.26 16 37 H 0.15 0.25 6.30 -2.91 -0.02 0.23 16 38 H 0.10 0.90 6.02 -2.38 -0.01 0.89 16 39 H 0.10 0.19 7.66 -2.39 -0.02 0.18 16 40 H 0.41 -1.01 7.84 -92.71 -0.73 -1.74 16 41 H 0.14 -0.15 6.26 -2.91 -0.02 -0.17 16 42 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 43 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 44 H 0.13 0.61 8.06 -2.91 -0.02 0.59 16 45 H 0.11 0.89 6.91 -2.91 -0.02 0.87 16 46 H 0.10 -0.71 8.09 -2.39 -0.02 -0.73 16 47 H 0.12 -0.79 7.95 -2.38 -0.02 -0.81 16 48 H 0.40 -4.44 9.12 -74.06 -0.68 -5.11 16 49 H 0.11 0.00 6.00 -2.39 -0.01 -0.02 16 50 H 0.05 0.55 7.23 -2.39 -0.02 0.54 16 51 H 0.19 -1.54 7.74 -2.91 -0.02 -1.56 16 52 H 0.25 -3.06 8.06 -2.91 -0.02 -3.09 16 53 H 0.13 0.93 8.06 -2.91 -0.02 0.91 16 54 H 0.14 0.48 8.06 -2.91 -0.02 0.46 16 Total: 0.00 -28.11 444.75 -0.73 -28.84 By element: Atomic # 1 Polarization: -11.11 SS G_CDS: -1.01 Total: -12.11 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 4.65 Total: 3.73 kcal Atomic # 7 Polarization: -1.75 SS G_CDS: -1.62 Total: -3.37 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -4.79 Total: -19.26 kcal Atomic # 14 Polarization: 0.13 SS G_CDS: 2.04 Total: 2.17 kcal Total: -28.11 -0.73 -28.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_4549634.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.687 kcal (2) G-P(sol) polarization free energy of solvation -28.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds