Wall clock time and date at job start Sat Mar 6 2021 23:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.46996 * 2 1 4 4 C 1.50706 * 109.47132 * 240.00404 * 2 1 3 5 5 C 1.38241 * 119.97066 * 120.01966 * 4 2 1 6 6 C 1.38298 * 120.10965 * 179.97438 * 5 4 2 7 7 C 1.38119 * 120.05290 * 359.68217 * 6 5 4 8 8 C 1.38758 * 119.94632 * 0.59036 * 7 6 5 9 9 O 1.35896 * 120.05717 * 179.70474 * 8 7 6 10 10 C 1.42901 * 117.00031 * 359.72520 * 9 8 7 11 11 C 1.50699 * 109.47147 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00060 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99955 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99915 * 175.05361 * 13 11 10 15 15 C 1.50699 * 112.85232 * 291.21122 * 14 13 11 16 16 C 1.38237 * 119.99442 * 346.63121 * 15 14 13 17 17 C 1.38242 * 119.99627 * 179.80938 * 16 15 14 18 18 C 1.38233 * 119.99880 * 0.41848 * 17 16 15 19 19 C 1.38231 * 120.00207 * 359.81091 * 18 17 16 20 20 C 1.38236 * 120.00237 * 166.90213 * 15 14 13 21 21 C 1.53785 * 113.61158 * 159.90531 * 14 13 11 22 22 C 1.53784 * 87.08214 * 270.88184 * 21 14 13 23 23 H 1.08992 * 113.61768 * 220.02145 * 22 21 14 24 24 O 1.42900 * 113.68924 * 89.12723 * 22 21 14 25 25 C 1.53783 * 113.61352 * 62.40724 * 14 13 11 26 26 C 1.38169 * 119.96978 * 299.99373 * 4 2 1 27 27 H 0.96693 * 114.00138 * 299.99572 * 1 2 3 28 28 H 1.08996 * 109.47322 * 119.99806 * 2 1 3 29 29 H 1.48501 * 109.99929 * 300.00430 * 3 2 1 30 30 H 1.48501 * 109.99898 * 61.31716 * 3 2 1 31 31 H 1.07997 * 119.95247 * 359.97438 * 5 4 2 32 32 H 1.07999 * 119.96720 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.02680 * 180.32692 * 7 6 5 34 34 H 1.09007 * 109.47385 * 300.00230 * 10 9 8 35 35 H 1.08995 * 109.46827 * 60.00481 * 10 9 8 36 36 H 0.96999 * 120.00240 * 355.06023 * 13 11 10 37 37 H 1.07998 * 120.00771 * 359.97438 * 16 15 14 38 38 H 1.07996 * 120.00266 * 180.20255 * 17 16 15 39 39 H 1.07997 * 120.00370 * 179.78722 * 18 17 16 40 40 H 1.08001 * 120.00786 * 179.97438 * 19 18 17 41 41 H 1.07992 * 119.99697 * 359.97438 * 20 15 14 42 42 H 1.08992 * 113.61480 * 25.43310 * 21 14 13 43 43 H 1.09006 * 113.61304 * 156.33993 * 21 14 13 44 44 H 0.96699 * 114.00232 * 82.46537 * 24 22 21 45 45 H 1.08996 * 113.61360 * 203.65971 * 25 14 13 46 46 H 1.09001 * 113.61439 * 334.56616 * 25 14 13 47 47 H 1.07993 * 120.02595 * 0.04786 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7264 -0.0380 -2.1399 6 6 3.1894 -0.6872 -3.2698 7 6 2.8637 -2.0114 -3.4890 8 6 2.0611 -2.6869 -2.5807 9 8 1.7343 -3.9880 -2.7972 10 6 2.2470 -4.5969 -3.9841 11 6 1.7835 -6.0291 -4.0544 12 8 1.0828 -6.4836 -3.1751 13 7 2.1469 -6.8046 -5.0951 14 6 1.7880 -8.2249 -5.1106 15 6 2.5271 -9.0267 -4.0704 16 6 3.6191 -8.4793 -3.4232 17 6 4.2947 -9.2133 -2.4662 18 6 3.8835 -10.4977 -2.1627 19 6 2.7945 -11.0468 -2.8133 20 6 2.1165 -10.3114 -3.7675 21 6 1.8212 -8.8533 -6.5138 22 6 0.3508 -8.4256 -6.6543 23 1 -0.2747 -9.1684 -7.1491 24 8 0.1838 -7.1124 -7.1925 25 6 0.2710 -8.4769 -5.1194 26 6 1.5973 -2.0332 -1.4486 27 1 -0.3933 0.4416 0.7650 28 1 1.7923 -0.5138 0.8900 29 1 1.5613 2.4679 -1.2085 30 1 1.5878 2.4586 1.2242 31 1 2.9865 0.9960 -1.9677 32 1 3.8101 -0.1596 -3.9789 33 1 3.2299 -2.5195 -4.3689 34 1 1.8835 -4.0544 -4.8569 35 1 3.3364 -4.5677 -3.9658 36 1 2.6461 -6.4224 -5.8337 37 1 3.9429 -7.4774 -3.6632 38 1 5.1458 -8.7846 -1.9581 39 1 4.4134 -11.0725 -1.4175 40 1 2.4734 -12.0504 -2.5765 41 1 1.2658 -10.7404 -4.2760 42 1 2.4923 -8.3433 -7.2048 43 1 1.9625 -9.9341 -6.5049 44 1 0.2330 -7.0736 -8.1575 45 1 -0.0114 -9.4547 -4.7294 46 1 -0.3093 -7.6630 -4.6848 47 1 0.9758 -2.5578 -0.7381 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_4860298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:51:50 Heat of formation + Delta-G solvation = -50.247601 kcal Electronic energy + Delta-G solvation = -31350.250841 eV Core-core repulsion = 27045.610565 eV Total energy + Delta-G solvation = -4304.640276 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.150 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.21074 -41.33350 -39.93546 -39.28934 -38.76817 -37.43407 -36.23410 -34.25169 -32.61795 -31.93150 -31.67614 -31.55973 -29.30182 -26.99575 -26.84549 -25.64140 -23.67751 -23.58841 -22.92549 -22.25994 -21.50467 -20.32652 -19.18573 -18.68845 -18.61027 -18.42571 -17.77734 -17.40770 -17.34459 -16.94882 -16.80322 -16.43015 -15.86000 -15.73852 -15.70683 -15.49891 -15.22457 -15.05737 -14.63594 -14.56036 -14.38117 -14.13373 -14.03590 -13.78762 -13.68779 -13.53772 -13.32695 -13.20459 -12.97902 -12.53028 -12.35180 -12.25969 -12.17017 -12.03867 -11.95443 -11.73866 -11.48095 -10.97875 -10.89063 -10.59630 -10.13073 -9.91382 -9.86742 -9.61123 -9.30709 -4.92744 0.18295 0.36995 0.37040 0.44969 1.25385 1.44105 1.45775 1.61534 1.94522 2.52472 2.61583 2.75655 3.11442 3.34374 3.41518 3.49330 3.60760 3.68008 3.76509 3.78248 3.83563 3.94866 4.03422 4.04148 4.08188 4.11518 4.21653 4.24815 4.25450 4.35961 4.46651 4.57750 4.59774 4.62652 4.66705 4.81285 4.84648 4.95425 4.95870 4.97961 5.03261 5.11133 5.21571 5.34423 5.36159 5.44052 5.51755 5.58051 5.65486 5.70886 6.05592 6.25324 6.45688 6.54435 6.90923 7.14486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.100 4.100 3 Si 0.785 3.215 4 C -0.047 4.047 5 C -0.159 4.159 6 C -0.069 4.069 7 C -0.203 4.203 8 C 0.113 3.887 9 O -0.322 6.322 10 C 0.039 3.961 11 C 0.516 3.484 12 O -0.558 6.558 13 N -0.682 5.682 14 C 0.193 3.807 15 C -0.085 4.085 16 C -0.123 4.123 17 C -0.132 4.132 18 C -0.134 4.134 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.143 4.143 22 C 0.087 3.913 23 H 0.092 0.908 24 O -0.565 6.565 25 C -0.144 4.144 26 C -0.151 4.151 27 H 0.395 0.605 28 H 0.090 0.910 29 H -0.293 1.293 30 H -0.287 1.287 31 H 0.149 0.851 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.420 0.580 37 H 0.118 0.882 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.399 0.601 45 H 0.112 0.888 46 H 0.051 0.949 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.083 -0.395 -6.581 9.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.207 4.207 3 Si 0.689 3.311 4 C -0.047 4.047 5 C -0.176 4.176 6 C -0.086 4.086 7 C -0.222 4.222 8 C 0.068 3.932 9 O -0.235 6.235 10 C -0.039 4.039 11 C 0.302 3.698 12 O -0.435 6.435 13 N -0.336 5.336 14 C 0.106 3.894 15 C -0.086 4.086 16 C -0.141 4.141 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.181 4.181 22 C 0.028 3.972 23 H 0.110 0.890 24 O -0.373 6.373 25 C -0.182 4.182 26 C -0.170 4.170 27 H 0.245 0.755 28 H 0.108 0.892 29 H -0.220 1.220 30 H -0.214 1.214 31 H 0.166 0.834 32 H 0.184 0.816 33 H 0.178 0.822 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.258 0.742 37 H 0.136 0.864 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.119 0.881 43 H 0.137 0.863 44 H 0.249 0.751 45 H 0.130 0.870 46 H 0.070 0.930 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.298 -0.184 -5.760 8.537 hybrid contribution -1.183 -0.220 0.082 1.207 sum 5.114 -0.405 -5.678 7.652 Atomic orbital electron populations 1.86557 1.18689 1.80919 1.50943 1.25292 0.84097 1.13053 0.98238 0.93959 0.89967 0.70669 0.76547 1.19294 0.96980 0.92530 0.95939 1.21181 1.00551 1.00759 0.95136 1.21331 0.97352 0.93392 0.96560 1.21623 1.02437 0.96938 1.01181 1.19198 0.95756 0.82942 0.95307 1.86121 1.71370 1.23271 1.42752 1.22696 1.01737 0.90867 0.88605 1.20415 0.79879 0.87716 0.81822 1.90760 1.37447 1.75190 1.40096 1.45142 1.57933 1.08121 1.22359 1.19975 0.93992 0.80089 0.95379 1.20005 0.95866 0.94903 0.97874 1.21063 0.96134 0.99832 0.97082 1.21402 1.00531 0.95197 0.97900 1.21463 0.97646 0.95789 1.00339 1.21446 0.95732 1.00860 0.96293 1.21180 1.00380 0.93836 0.98699 1.23984 0.98310 1.02875 0.92918 1.22678 0.95634 0.85257 0.93661 0.89013 1.86476 1.95179 1.27863 1.27805 1.23593 0.95352 1.03050 0.96190 1.20283 1.03816 0.95085 0.97849 0.75478 0.89239 1.22044 1.21381 0.83363 0.81610 0.82181 0.86363 0.85745 0.74170 0.86437 0.85100 0.84600 0.84089 0.84202 0.88054 0.86337 0.75062 0.87009 0.93017 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.74 12.74 -148.98 -1.90 -5.64 16 2 C -0.10 -0.31 2.81 71.24 0.20 -0.11 16 3 Si 0.78 -0.76 29.79 68.60 2.04 1.28 16 4 C -0.05 -0.29 5.42 -19.88 -0.11 -0.40 16 5 C -0.16 -0.24 8.67 22.28 0.19 -0.04 16 6 C -0.07 0.09 10.04 22.26 0.22 0.31 16 7 C -0.20 -0.12 9.04 22.37 0.20 0.08 16 8 C 0.11 0.91 6.69 22.51 0.15 1.06 16 9 O -0.32 -3.48 9.67 -73.34 -0.71 -4.19 16 10 C 0.04 0.05 5.22 71.24 0.37 0.42 16 11 C 0.52 3.50 6.40 87.66 0.56 4.06 16 12 O -0.56 -10.05 14.91 16.01 0.24 -9.81 16 13 N -0.68 0.16 3.76 -423.92 -1.59 -1.43 16 14 C 0.19 0.19 0.94 3.38 0.00 0.19 16 15 C -0.09 -0.38 4.89 -19.87 -0.10 -0.48 16 16 C -0.12 -0.70 8.98 22.27 0.20 -0.50 16 17 C -0.13 -0.68 10.05 22.27 0.22 -0.45 16 18 C -0.13 -0.53 10.05 22.27 0.22 -0.30 16 19 C -0.13 -0.38 10.05 22.27 0.22 -0.15 16 20 C -0.12 -0.37 8.71 22.27 0.19 -0.18 16 21 C -0.14 0.85 7.13 31.12 0.22 1.07 16 22 C 0.09 -0.29 5.27 31.12 0.16 -0.13 16 23 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 24 O -0.56 1.38 13.09 -148.98 -1.95 -0.57 16 25 C -0.14 -0.51 6.56 31.12 0.20 -0.30 16 26 C -0.15 -1.59 9.55 22.37 0.21 -1.38 16 27 H 0.39 -0.79 8.74 -74.06 -0.65 -1.44 16 28 H 0.09 0.01 7.96 -2.39 -0.02 -0.01 16 29 H -0.29 -1.59 7.11 99.48 0.71 -0.89 16 30 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 31 H 0.15 -0.49 4.87 -2.91 -0.01 -0.50 16 32 H 0.17 -1.37 8.06 -2.91 -0.02 -1.39 16 33 H 0.16 -1.04 6.30 -2.91 -0.02 -1.06 16 34 H 0.12 -0.50 7.68 -2.38 -0.02 -0.51 16 35 H 0.12 -0.73 7.65 -2.39 -0.02 -0.74 16 36 H 0.42 -3.07 8.69 -92.71 -0.81 -3.88 16 37 H 0.12 0.42 6.73 -2.91 -0.02 0.40 16 38 H 0.13 0.23 8.06 -2.91 -0.02 0.21 16 39 H 0.14 0.01 8.06 -2.91 -0.02 -0.02 16 40 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 41 H 0.14 -0.21 6.55 -2.91 -0.02 -0.23 16 42 H 0.10 -0.94 8.10 -2.39 -0.02 -0.96 16 43 H 0.12 -0.92 7.79 -2.38 -0.02 -0.94 16 44 H 0.40 -4.56 9.12 -74.06 -0.68 -5.24 16 45 H 0.11 0.13 6.22 -2.39 -0.01 0.12 16 46 H 0.05 0.63 6.95 -2.39 -0.02 0.61 16 47 H 0.11 1.50 8.06 -2.91 -0.02 1.48 16 Total: 0.00 -32.26 386.41 -1.35 -33.60 By element: Atomic # 1 Polarization: -14.96 SS G_CDS: -1.05 Total: -16.01 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 3.57 Total: 2.75 kcal Atomic # 7 Polarization: 0.16 SS G_CDS: -1.59 Total: -1.43 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -4.32 Total: -20.20 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: 2.04 Total: 1.28 kcal Total: -32.26 -1.35 -33.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_4860298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.645 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds