Wall clock time and date at job start Sat Mar 6 2021 23:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35987 * 116.99794 * 2 1 4 4 C 1.39152 * 120.07513 * 180.02562 * 3 2 1 5 5 O 1.36000 * 120.06931 * 359.97438 * 4 3 2 6 6 C 1.42904 * 116.99837 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46905 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00352 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99766 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00198 * 175.26486 * 9 7 6 11 11 C 1.50701 * 112.84690 * 72.62957 * 10 9 7 12 12 C 1.38241 * 119.99840 * 192.97446 * 11 10 9 13 13 C 1.38234 * 119.99395 * 179.79325 * 12 11 10 14 14 C 1.38230 * 120.00201 * 0.46345 * 13 12 11 15 15 C 1.38231 * 120.00288 * 359.76807 * 14 13 12 16 16 C 1.38228 * 119.99705 * 0.02562 * 15 14 13 17 17 C 1.53785 * 113.61354 * 301.44112 * 10 9 7 18 18 C 1.53775 * 87.08136 * 270.88114 * 17 10 9 19 19 H 1.08997 * 113.61811 * 220.02330 * 18 17 10 20 20 O 1.42902 * 113.61688 * 89.11546 * 18 17 10 21 21 C 1.53780 * 113.61911 * 203.94207 * 10 9 7 22 22 C 1.38562 * 119.85951 * 179.97438 * 4 3 2 23 23 C 1.38250 * 119.99764 * 359.72240 * 22 4 3 24 24 C 1.38254 * 120.14266 * 0.55251 * 23 22 4 25 25 C 1.50699 * 119.92601 * 179.72296 * 24 23 22 26 26 O 1.42904 * 109.47232 * 119.72159 * 25 24 23 27 27 Si 1.86299 * 109.47048 * 359.72612 * 25 24 23 28 28 C 1.38244 * 120.14814 * 359.44713 * 24 23 22 29 29 H 1.09011 * 109.47041 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47264 * 299.99898 * 1 2 3 31 31 H 1.08996 * 109.46926 * 60.00532 * 1 2 3 32 32 H 1.08997 * 109.46549 * 299.99470 * 6 5 4 33 33 H 1.08996 * 109.47154 * 59.99589 * 6 5 4 34 34 H 0.97001 * 120.00458 * 355.26687 * 9 7 6 35 35 H 1.07996 * 120.00106 * 0.02562 * 12 11 10 36 36 H 1.08003 * 119.99533 * 180.25237 * 13 12 11 37 37 H 1.08003 * 119.99825 * 179.79290 * 14 13 12 38 38 H 1.08001 * 119.99869 * 179.97438 * 15 14 13 39 39 H 1.08007 * 120.00068 * 179.97438 * 16 15 14 40 40 H 1.09002 * 113.61347 * 25.43107 * 17 10 9 41 41 H 1.08997 * 113.61547 * 156.32730 * 17 10 9 42 42 H 0.96699 * 113.99714 * 180.02562 * 20 18 17 43 43 H 1.08998 * 113.61175 * 203.66487 * 21 10 9 44 44 H 1.08999 * 113.60939 * 334.56771 * 21 10 9 45 45 H 1.08004 * 120.00359 * 179.97438 * 22 4 3 46 46 H 1.07997 * 119.92832 * 180.29396 * 23 22 4 47 47 H 1.08997 * 109.47390 * 239.72634 * 25 24 23 48 48 H 0.96694 * 114.00090 * 179.97438 * 26 25 24 49 49 H 1.48498 * 110.00187 * 59.99987 * 27 25 24 50 50 H 1.48500 * 110.00035 * 181.31908 * 27 25 24 51 51 H 1.08003 * 120.00054 * 180.25822 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1795 0.1477 -0.0005 6 6 5.6003 0.3007 -0.0005 7 6 6.2519 -1.0581 0.0001 8 8 5.5671 -2.0591 0.0010 9 7 7.5957 -1.1611 -0.0003 10 6 8.2296 -2.4777 0.1050 11 6 8.1001 -3.2920 -1.1564 12 6 8.4000 -4.6414 -1.1417 13 6 8.2771 -5.3892 -2.2978 14 6 7.8636 -4.7857 -3.4707 15 6 7.5684 -3.4354 -3.4865 16 6 7.6871 -2.6885 -2.3294 17 6 7.8415 -3.2481 1.3781 18 6 9.0339 -2.5602 2.0634 19 1 9.5912 -3.2162 2.7320 20 8 8.7040 -1.3055 2.6625 21 6 9.6609 -2.4293 0.6652 22 6 4.0602 2.5234 -0.0011 23 6 3.3028 3.6799 -0.0069 24 6 1.9223 3.6057 -0.0006 25 6 1.1015 4.8696 -0.0007 26 8 0.2767 4.9019 -1.1672 27 14 2.2363 6.3470 -0.0015 28 6 1.2931 2.3748 -0.0001 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 5.9064 0.8504 -0.8906 33 1 5.9065 0.8506 0.8894 34 1 8.1432 -0.3635 -0.0703 35 1 8.7266 -5.1121 -0.2263 36 1 8.5075 -6.4443 -2.2854 37 1 7.7709 -5.3694 -4.3747 38 1 7.2457 -2.9639 -4.4030 39 1 7.4569 -1.6333 -2.3418 40 1 6.8745 -2.9559 1.7876 41 1 7.9543 -4.3283 1.2862 42 1 9.4502 -0.8678 3.0948 43 1 10.2711 -3.2857 0.3784 44 1 10.1627 -1.4760 0.4992 45 1 5.1386 2.5840 -0.0011 46 1 3.7906 4.6434 -0.0121 47 1 0.4730 4.8947 0.8895 48 1 -0.2806 5.6893 -1.2332 49 1 3.0986 6.3245 -1.2103 50 1 1.4394 7.5996 0.0306 51 1 0.2145 2.3196 0.0006 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_60476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:52:05 Heat of formation + Delta-G solvation = -82.783869 kcal Electronic energy + Delta-G solvation = -36087.355258 eV Core-core repulsion = 31307.084293 eV Total energy + Delta-G solvation = -4780.270966 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.165 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.18942 -41.69133 -40.17433 -39.35209 -39.04066 -38.74393 -37.14254 -36.18743 -34.19498 -32.18048 -31.80990 -31.66068 -31.46306 -29.53799 -28.47885 -26.97020 -26.24365 -25.60062 -23.75181 -23.44671 -22.65382 -22.33080 -21.63035 -20.31520 -19.69697 -18.71706 -18.64587 -18.46044 -18.20062 -17.75024 -17.47114 -17.38759 -16.93970 -16.61807 -16.41742 -16.11217 -15.93677 -15.76244 -15.64058 -15.57331 -15.35864 -15.10249 -14.73500 -14.44102 -14.32531 -14.06222 -14.05589 -13.97509 -13.63916 -13.51651 -13.47976 -13.20320 -12.96074 -12.81073 -12.56727 -12.31066 -12.25768 -12.22913 -12.18914 -11.96790 -11.93559 -11.72073 -11.45177 -10.93961 -10.85678 -10.51341 -10.09461 -9.85636 -9.79175 -9.59312 -8.92834 -4.90060 0.15054 0.25461 0.38533 0.46236 1.31380 1.43978 1.53083 1.63483 1.97393 2.28768 2.50606 2.54226 2.77012 3.14704 3.35169 3.43482 3.53974 3.64095 3.68554 3.70014 3.82077 3.87203 3.88979 4.01816 4.06108 4.09010 4.10314 4.15321 4.22135 4.25479 4.28362 4.32891 4.38088 4.46711 4.58859 4.61532 4.61605 4.63207 4.68934 4.84138 4.88373 4.97662 4.97952 4.99438 5.04746 5.09184 5.12577 5.36729 5.38871 5.53005 5.56509 5.58869 5.72292 5.95096 6.06879 6.42411 6.53590 6.58939 6.95614 7.19927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.084 3.916 5 O -0.312 6.312 6 C 0.036 3.964 7 C 0.516 3.484 8 O -0.557 6.557 9 N -0.682 5.682 10 C 0.192 3.808 11 C -0.084 4.084 12 C -0.123 4.123 13 C -0.126 4.126 14 C -0.135 4.135 15 C -0.135 4.135 16 C -0.121 4.121 17 C -0.143 4.143 18 C 0.089 3.911 19 H 0.093 0.907 20 O -0.563 6.563 21 C -0.144 4.144 22 C -0.160 4.160 23 C -0.111 4.111 24 C -0.081 4.081 25 C -0.088 4.088 26 O -0.560 6.560 27 Si 0.773 3.227 28 C -0.152 4.152 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.420 0.580 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.051 0.949 41 H 0.112 0.888 42 H 0.399 0.601 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.175 0.825 46 H 0.158 0.842 47 H 0.094 0.906 48 H 0.395 0.605 49 H -0.293 1.293 50 H -0.288 1.288 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.043 5.163 3.712 9.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.031 3.969 4 C 0.038 3.962 5 O -0.226 6.226 6 C -0.042 4.042 7 C 0.302 3.698 8 O -0.434 6.434 9 N -0.335 5.335 10 C 0.105 3.895 11 C -0.085 4.085 12 C -0.141 4.141 13 C -0.144 4.144 14 C -0.153 4.153 15 C -0.153 4.153 16 C -0.140 4.140 17 C -0.181 4.181 18 C 0.030 3.970 19 H 0.110 0.890 20 O -0.371 6.371 21 C -0.182 4.182 22 C -0.178 4.178 23 C -0.129 4.129 24 C -0.082 4.082 25 C -0.196 4.196 26 O -0.370 6.370 27 Si 0.678 3.322 28 C -0.171 4.171 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.258 0.742 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.070 0.930 41 H 0.130 0.870 42 H 0.250 0.750 43 H 0.135 0.865 44 H 0.119 0.881 45 H 0.192 0.808 46 H 0.175 0.825 47 H 0.112 0.888 48 H 0.245 0.755 49 H -0.220 1.220 50 H -0.215 1.215 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.504 4.074 2.995 8.239 hybrid contribution -1.097 0.585 -0.813 1.485 sum 5.408 4.659 2.183 7.464 Atomic orbital electron populations 1.23288 0.76805 1.05205 1.02097 1.86189 1.23047 1.26554 1.89113 1.18643 0.89876 0.85622 1.02750 1.18589 0.88254 0.86534 1.02802 1.86224 1.18099 1.28957 1.89269 1.22733 0.79428 0.95504 1.06554 1.20399 0.82879 0.90713 0.75797 1.90773 1.63890 1.39765 1.48954 1.45131 1.04958 1.09066 1.74393 1.19990 0.95662 0.82927 0.90887 1.20045 0.99226 0.94656 0.94596 1.21191 1.00653 0.92996 0.99228 1.21442 0.99307 1.00886 0.92717 1.21444 0.99614 0.95057 0.99201 1.21384 1.00238 0.95009 0.98643 1.21041 0.99830 1.00129 0.92956 1.23575 0.99112 1.00547 0.94838 1.22648 0.95040 0.86298 0.93016 0.88965 1.86470 1.40984 1.34473 1.75196 1.23988 0.92923 1.05661 0.95585 1.21343 1.02185 0.89313 1.04960 1.20959 0.92328 0.98993 1.00608 1.19279 0.93839 0.93436 1.01611 1.25093 0.99879 1.04054 0.90573 1.86548 1.58486 1.48049 1.43925 0.94078 0.79632 0.72265 0.86263 1.21014 1.00563 0.90515 1.04963 0.87054 0.91378 0.92111 0.86119 0.85762 0.74195 0.84073 0.84058 0.84709 0.85407 0.86648 0.93013 0.87005 0.75036 0.86462 0.88053 0.80773 0.82532 0.88799 0.75460 1.22032 1.21498 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.21 16 2 O -0.33 -4.66 10.28 -79.53 -0.82 -5.48 16 3 C 0.08 0.87 6.70 22.57 0.15 1.02 16 4 C 0.08 0.76 6.70 22.57 0.15 0.91 16 5 O -0.31 -3.78 9.46 -67.14 -0.63 -4.41 16 6 C 0.04 0.06 5.22 71.24 0.37 0.43 16 7 C 0.52 3.73 6.58 87.66 0.58 4.31 16 8 O -0.56 -10.43 14.97 16.01 0.24 -10.19 16 9 N -0.68 0.08 3.64 -423.92 -1.54 -1.47 16 10 C 0.19 0.22 0.94 3.38 0.00 0.22 16 11 C -0.08 -0.43 4.86 -19.86 -0.10 -0.53 16 12 C -0.12 -0.44 8.71 22.27 0.19 -0.24 16 13 C -0.13 -0.47 10.05 22.27 0.22 -0.25 16 14 C -0.14 -0.68 10.05 22.27 0.22 -0.46 16 15 C -0.13 -0.89 10.05 22.27 0.22 -0.66 16 16 C -0.12 -0.85 9.05 22.27 0.20 -0.65 16 17 C -0.14 -0.46 6.55 31.12 0.20 -0.26 16 18 C 0.09 -0.35 5.28 31.12 0.16 -0.19 16 19 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 20 O -0.56 1.97 13.09 -148.98 -1.95 0.02 16 21 C -0.14 0.87 7.14 31.12 0.22 1.09 16 22 C -0.16 -0.19 9.04 22.35 0.20 0.01 16 23 C -0.11 -0.07 8.66 22.28 0.19 0.12 16 24 C -0.08 -0.31 5.42 -19.86 -0.11 -0.42 16 25 C -0.09 0.02 2.81 71.24 0.20 0.22 16 26 O -0.56 -1.47 12.74 -148.98 -1.90 -3.37 16 27 Si 0.77 -2.40 29.78 68.60 2.04 -0.36 16 28 C -0.15 -1.07 8.60 22.35 0.19 -0.88 16 29 H 0.11 0.19 8.14 -2.38 -0.02 0.18 16 30 H 0.07 0.09 7.66 -2.39 -0.02 0.08 16 31 H 0.06 0.18 7.66 -2.39 -0.02 0.16 16 32 H 0.12 -0.62 7.66 -2.39 -0.02 -0.64 16 33 H 0.12 -0.58 7.66 -2.39 -0.02 -0.60 16 34 H 0.42 -3.10 8.72 -92.71 -0.81 -3.91 16 35 H 0.14 -0.19 6.56 -2.91 -0.02 -0.21 16 36 H 0.14 -0.12 8.06 -2.91 -0.02 -0.14 16 37 H 0.14 0.16 8.06 -2.91 -0.02 0.14 16 38 H 0.13 0.47 8.06 -2.91 -0.02 0.44 16 39 H 0.12 0.62 6.86 -2.91 -0.02 0.60 16 40 H 0.05 0.60 6.94 -2.39 -0.02 0.58 16 41 H 0.11 0.12 6.23 -2.39 -0.01 0.10 16 42 H 0.40 -4.98 9.12 -74.06 -0.68 -5.65 16 43 H 0.12 -0.90 7.79 -2.39 -0.02 -0.92 16 44 H 0.10 -0.95 8.11 -2.39 -0.02 -0.97 16 45 H 0.18 -1.22 6.30 -2.91 -0.02 -1.24 16 46 H 0.16 -0.80 4.87 -2.91 -0.01 -0.81 16 47 H 0.09 -0.38 7.96 -2.39 -0.02 -0.40 16 48 H 0.39 -2.23 8.74 -74.06 -0.65 -2.87 16 49 H -0.29 -1.01 7.11 99.48 0.71 -0.30 16 50 H -0.29 -0.34 7.11 99.48 0.71 0.36 16 51 H 0.14 0.68 6.30 -2.91 -0.02 0.66 16 Total: 0.00 -35.26 415.96 -1.03 -36.29 By element: Atomic # 1 Polarization: -14.96 SS G_CDS: -1.08 Total: -16.04 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 4.61 Total: 5.00 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -1.54 Total: -1.47 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -5.06 Total: -23.43 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: 2.04 Total: -0.36 kcal Total: -35.26 -1.03 -36.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_60476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.494 kcal (2) G-P(sol) polarization free energy of solvation -35.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds