Wall clock time and date at job start Sat Mar 6 2021 23:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86306 * 109.47226 * 2 1 4 4 C 1.50696 * 109.47266 * 239.99960 * 2 1 3 5 5 C 1.35457 * 125.56709 * 120.02530 * 4 2 1 6 6 C 1.39830 * 107.86787 * 179.97438 * 5 4 2 7 7 C 1.37874 * 107.08534 * 359.97438 * 6 5 4 8 8 C 1.46673 * 126.23472 * 179.97438 * 7 6 5 9 9 O 1.21689 * 120.00322 * 0.03062 * 8 7 6 10 10 N 1.34780 * 119.99935 * 180.02562 * 8 7 6 11 11 C 1.46509 * 119.99928 * 174.76599 * 10 8 7 12 12 C 1.50693 * 112.85093 * 292.11252 * 11 10 8 13 13 C 1.38241 * 120.00085 * 165.14243 * 12 11 10 14 14 C 1.38235 * 120.00172 * 179.76457 * 13 12 11 15 15 C 1.38231 * 119.99657 * 0.51003 * 14 13 12 16 16 C 1.38236 * 120.00446 * 359.74343 * 15 14 13 17 17 C 1.38236 * 119.99917 * 0.02562 * 16 15 14 18 18 C 1.53777 * 113.61369 * 160.80314 * 11 10 8 19 19 C 1.53787 * 87.08261 * 270.88983 * 18 11 10 20 20 H 1.09004 * 113.61070 * 220.01949 * 19 18 11 21 21 O 1.42896 * 113.61675 * 89.11612 * 19 18 11 22 22 C 1.53784 * 113.60981 * 63.30755 * 11 10 8 23 23 N 1.35533 * 125.56306 * 299.71617 * 4 2 1 24 24 H 0.96705 * 113.99981 * 60.00273 * 1 2 3 25 25 H 1.08999 * 109.47430 * 119.99608 * 2 1 3 26 26 H 1.48496 * 110.00035 * 59.99710 * 3 2 1 27 27 H 1.48500 * 110.00149 * 181.31650 * 3 2 1 28 28 H 1.07999 * 126.06047 * 359.96343 * 5 4 2 29 29 H 1.08000 * 126.46085 * 179.97438 * 6 5 4 30 30 H 0.97002 * 120.00299 * 354.77660 * 10 8 7 31 31 H 1.08007 * 119.99510 * 0.02562 * 13 12 11 32 32 H 1.07994 * 120.00056 * 180.23145 * 14 13 12 33 33 H 1.08001 * 119.99804 * 179.72367 * 15 14 13 34 34 H 1.07994 * 120.00191 * 179.97438 * 16 15 14 35 35 H 1.07995 * 120.00177 * 179.97438 * 17 16 15 36 36 H 1.09003 * 113.61175 * 25.43516 * 18 11 10 37 37 H 1.09000 * 113.61542 * 156.34031 * 18 11 10 38 38 H 0.96698 * 114.00014 * 82.49934 * 21 19 18 39 39 H 1.08994 * 113.61086 * 203.66327 * 22 11 10 40 40 H 1.09003 * 113.61512 * 334.48616 * 22 11 10 41 41 H 0.96997 * 125.67609 * 0.02977 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7138 -0.1637 -2.1915 6 6 2.9578 -1.1461 -3.1563 7 6 2.3032 -2.2881 -2.7461 8 6 2.2798 -3.5744 -3.4505 9 8 2.8785 -3.7033 -4.5021 10 7 1.5953 -4.6137 -2.9330 11 6 1.4759 -5.8621 -3.6905 12 6 0.6320 -5.7160 -4.9303 13 6 0.6660 -6.6921 -5.9086 14 6 -0.1118 -6.5605 -7.0438 15 6 -0.9156 -5.4475 -7.2055 16 6 -0.9456 -4.4688 -6.2297 17 6 -0.1714 -4.6028 -5.0924 18 6 1.0962 -7.0745 -2.8239 19 6 2.6030 -7.2897 -2.6037 20 1 2.9017 -8.3378 -2.6230 21 8 3.1232 -6.5836 -1.4755 22 6 2.8223 -6.5619 -3.9406 23 7 1.6788 -2.0023 -1.5530 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5138 0.8900 26 1 1.5615 2.4679 1.2084 27 1 3.5346 1.7703 -0.0321 28 1 3.0834 0.8509 -2.2095 29 1 3.5478 -1.0318 -4.0536 30 1 1.1815 -4.5352 -2.0592 31 1 1.2971 -7.5597 -5.7840 32 1 -0.0881 -7.3249 -7.8063 33 1 -1.5199 -5.3425 -8.0944 34 1 -1.5733 -3.5992 -6.3563 35 1 -0.1946 -3.8380 -4.3302 36 1 0.5557 -6.8094 -1.9152 37 1 0.6175 -7.8782 -3.3833 38 1 2.9882 -7.0364 -0.6318 39 1 2.8154 -7.2255 -4.8052 40 1 3.6750 -5.8829 -3.9348 41 1 1.1453 -2.6218 -1.0311 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_6580494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:52:19 Heat of formation + Delta-G solvation = -3.218051 kcal Electronic energy + Delta-G solvation = -26615.412744 eV Core-core repulsion = 22849.831863 eV Total energy + Delta-G solvation = -3765.580881 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.66198 -41.86120 -39.62818 -39.19669 -37.67588 -36.29489 -34.30447 -32.19531 -31.81455 -31.68177 -31.22482 -27.24560 -26.96990 -25.62123 -23.72274 -23.32663 -22.34543 -21.62094 -21.14712 -20.28093 -19.91536 -18.67726 -18.14197 -17.84576 -17.05321 -16.69045 -16.46076 -16.26758 -15.95207 -15.59454 -15.41370 -15.25343 -15.15183 -14.82032 -14.49518 -14.42916 -14.34000 -14.06070 -13.95553 -13.69558 -13.60155 -13.25202 -12.98476 -12.38907 -12.27595 -12.20716 -12.07196 -11.95835 -11.58799 -11.13011 -11.02938 -10.67484 -10.20275 -10.09340 -9.86691 -9.61927 -9.28345 -4.91526 0.30327 0.37149 0.45187 1.22342 1.53442 1.72082 1.87628 1.95458 2.19722 2.28287 2.75418 3.08133 3.41048 3.45420 3.54457 3.58965 3.64702 3.69272 3.84400 4.04053 4.07497 4.21765 4.23957 4.29225 4.34480 4.43894 4.56709 4.59377 4.65334 4.76401 4.78620 4.93041 4.93767 4.96566 5.02633 5.09203 5.11118 5.33494 5.51645 5.56638 5.58488 5.69021 5.77664 6.05641 6.26370 6.44861 6.65779 6.84510 7.07560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.054 4.054 3 Si 0.804 3.196 4 C 0.029 3.971 5 C -0.205 4.205 6 C -0.120 4.120 7 C -0.063 4.063 8 C 0.593 3.407 9 O -0.558 6.558 10 N -0.689 5.689 11 C 0.190 3.810 12 C -0.083 4.083 13 C -0.121 4.121 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.131 4.131 17 C -0.122 4.122 18 C -0.146 4.146 19 C 0.086 3.914 20 H 0.095 0.905 21 O -0.566 6.566 22 C -0.140 4.140 23 N -0.511 5.511 24 H 0.398 0.602 25 H 0.116 0.884 26 H -0.293 1.293 27 H -0.286 1.286 28 H 0.169 0.831 29 H 0.143 0.857 30 H 0.407 0.593 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.397 0.603 39 H 0.117 0.883 40 H 0.054 0.946 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 -1.901 2.530 5.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.164 4.164 3 Si 0.708 3.292 4 C -0.090 4.090 5 C -0.229 4.229 6 C -0.147 4.147 7 C -0.177 4.177 8 C 0.381 3.619 9 O -0.436 6.436 10 N -0.339 5.339 11 C 0.103 3.897 12 C -0.085 4.085 13 C -0.139 4.139 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.149 4.149 17 C -0.140 4.140 18 C -0.184 4.184 19 C 0.027 3.973 20 H 0.113 0.887 21 O -0.375 6.375 22 C -0.178 4.178 23 N -0.108 5.108 24 H 0.249 0.751 25 H 0.133 0.867 26 H -0.221 1.221 27 H -0.212 1.212 28 H 0.186 0.814 29 H 0.160 0.840 30 H 0.244 0.756 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.139 0.861 38 H 0.248 0.752 39 H 0.135 0.865 40 H 0.073 0.927 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.223 -1.457 2.365 4.255 hybrid contribution -0.299 -1.049 1.006 1.484 sum -3.523 -2.506 3.371 5.482 Atomic orbital electron populations 1.86470 1.16818 1.82147 1.50755 1.25064 0.85394 1.11292 0.94659 0.92964 0.77845 0.73808 0.84588 1.21358 1.03082 0.84949 0.99617 1.20921 1.05230 1.01184 0.95544 1.21451 1.00913 0.91637 1.00691 1.20359 1.09048 0.96243 0.92029 1.17162 0.78247 0.82470 0.84004 1.90839 1.45044 1.83518 1.24243 1.45231 1.54908 1.12229 1.21524 1.20008 0.95399 0.84225 0.90021 1.19946 0.97075 0.95363 0.96078 1.21188 0.99726 0.99443 0.93587 1.21454 0.96237 0.98487 0.98005 1.21464 0.99653 0.94370 0.99529 1.21375 0.99538 0.99739 0.94240 1.20996 0.97243 0.97538 0.98268 1.24007 0.98069 0.95933 1.00409 1.22713 0.92518 0.95719 0.86371 0.88728 1.86489 1.81834 1.51021 1.18110 1.23591 0.96829 0.99474 0.97926 1.41882 1.39913 1.11196 1.17837 0.75101 0.86657 1.22075 1.21249 0.81416 0.83962 0.75646 0.84061 0.83920 0.84457 0.85183 0.87219 0.88725 0.86093 0.75247 0.86528 0.92743 0.73471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.05 12.88 -148.98 -1.92 0.13 16 2 C -0.05 0.20 3.08 71.23 0.22 0.42 16 3 Si 0.80 -3.53 30.54 68.60 2.10 -1.44 16 4 C 0.03 -0.02 6.47 41.34 0.27 0.25 16 5 C -0.20 -0.23 9.32 22.01 0.21 -0.03 16 6 C -0.12 -0.76 10.65 22.57 0.24 -0.52 16 7 C -0.06 -0.36 7.05 40.35 0.28 -0.08 16 8 C 0.59 5.24 6.30 86.45 0.54 5.79 16 9 O -0.56 -9.53 15.33 -4.31 -0.07 -9.60 16 10 N -0.69 -1.55 3.76 -427.84 -1.61 -3.16 16 11 C 0.19 0.37 0.94 3.38 0.00 0.37 16 12 C -0.08 -0.40 4.84 -19.87 -0.10 -0.49 16 13 C -0.12 -0.33 8.80 22.27 0.20 -0.14 16 14 C -0.12 -0.31 10.05 22.27 0.22 -0.08 16 15 C -0.13 -0.46 10.05 22.27 0.22 -0.24 16 16 C -0.13 -0.68 10.05 22.27 0.22 -0.46 16 17 C -0.12 -0.79 8.97 22.27 0.20 -0.59 16 18 C -0.15 0.70 7.13 31.12 0.22 0.92 16 19 C 0.09 -0.24 5.28 31.12 0.16 -0.08 16 20 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 21 O -0.57 0.64 13.09 -148.98 -1.95 -1.30 16 22 C -0.14 -0.47 6.56 31.12 0.20 -0.27 16 23 N -0.51 0.18 5.99 -171.93 -1.03 -0.85 16 24 H 0.40 -4.28 8.70 -74.05 -0.64 -4.92 16 25 H 0.12 -0.40 7.96 -2.39 -0.02 -0.42 16 26 H -0.29 -0.70 7.11 99.48 0.71 0.00 16 27 H -0.29 -0.37 7.11 99.48 0.71 0.33 16 28 H 0.17 -0.58 6.17 -2.91 -0.02 -0.60 16 29 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 30 H 0.41 -1.21 7.82 -92.71 -0.73 -1.93 16 31 H 0.14 -0.28 6.45 -2.91 -0.02 -0.30 16 32 H 0.14 -0.30 8.06 -2.91 -0.02 -0.33 16 33 H 0.14 -0.07 8.06 -2.91 -0.02 -0.10 16 34 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 35 H 0.11 0.66 6.78 -2.91 -0.02 0.64 16 36 H 0.09 -0.69 8.10 -2.39 -0.02 -0.71 16 37 H 0.12 -0.86 7.85 -2.39 -0.02 -0.88 16 38 H 0.40 -3.94 9.12 -74.06 -0.68 -4.62 16 39 H 0.12 0.03 6.14 -2.39 -0.01 0.02 16 40 H 0.05 0.63 7.02 -2.39 -0.02 0.61 16 41 H 0.43 -2.14 8.20 -92.71 -0.76 -2.90 16 Total: 0.00 -24.13 342.00 -2.80 -26.93 By element: Atomic # 1 Polarization: -13.82 SS G_CDS: -1.65 Total: -15.47 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 3.33 Total: 4.76 kcal Atomic # 7 Polarization: -1.37 SS G_CDS: -2.64 Total: -4.01 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -3.93 Total: -10.78 kcal Atomic # 14 Polarization: -3.53 SS G_CDS: 2.10 Total: -1.44 kcal Total: -24.13 -2.80 -26.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_6580494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.711 kcal (2) G-P(sol) polarization free energy of solvation -24.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds