Wall clock time and date at job start Sat Mar 6 2021 23:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33820 * 122.44760 * 2 1 4 4 C 1.50696 * 124.52491 * 0.03419 * 3 2 1 5 5 O 1.42901 * 109.46929 * 245.18197 * 4 3 2 6 6 Si 1.86299 * 109.47557 * 125.17766 * 4 3 2 7 7 S 1.70621 * 110.95222 * 179.78506 * 3 2 1 8 8 C 1.75836 * 91.56399 * 0.31131 * 7 3 2 9 9 C 1.46575 * 125.45458 * 179.97438 * 8 7 3 10 10 O 1.21711 * 119.99706 * 179.69385 * 9 8 7 11 11 N 1.34770 * 120.00796 * 359.69332 * 9 8 7 12 12 C 1.46494 * 120.00550 * 185.45310 * 11 9 8 13 13 C 1.50696 * 112.85176 * 284.46569 * 12 11 9 14 14 C 1.38235 * 120.00195 * 166.76028 * 13 12 11 15 15 C 1.38233 * 120.00033 * 179.81530 * 14 13 12 16 16 C 1.38243 * 120.00150 * 0.39293 * 15 14 13 17 17 C 1.38235 * 119.99542 * 359.86140 * 16 15 14 18 18 C 1.38232 * 119.99940 * 347.03746 * 13 12 11 19 19 C 1.53782 * 113.61536 * 153.16018 * 12 11 9 20 20 C 1.53783 * 87.08296 * 270.88364 * 19 12 11 21 21 H 1.08995 * 113.68911 * 220.00560 * 20 19 12 22 22 O 1.42901 * 113.61112 * 89.11638 * 20 19 12 23 23 C 1.53785 * 87.08061 * 334.56790 * 20 19 12 24 24 C 1.36652 * 109.08097 * 359.69460 * 8 7 3 25 25 H 1.09000 * 109.46765 * 265.32323 * 1 2 3 26 26 H 1.08999 * 109.47192 * 25.31746 * 1 2 3 27 27 H 1.08993 * 109.47232 * 145.32453 * 1 2 3 28 28 H 1.09000 * 109.47133 * 5.17155 * 4 3 2 29 29 H 0.96702 * 113.99534 * 299.99893 * 5 4 3 30 30 H 1.48501 * 109.99760 * 58.68132 * 6 4 3 31 31 H 1.48499 * 109.99678 * 179.97438 * 6 4 3 32 32 H 0.97006 * 119.99538 * 5.45652 * 11 9 8 33 33 H 1.07999 * 119.99953 * 0.02562 * 14 13 12 34 34 H 1.08000 * 120.00520 * 180.23251 * 15 14 13 35 35 H 1.07991 * 119.99880 * 179.83748 * 16 15 14 36 36 H 1.07999 * 119.99645 * 179.97438 * 17 16 15 37 37 H 1.08002 * 120.00119 * 359.97438 * 18 13 12 38 38 H 1.08996 * 113.61594 * 156.33411 * 19 12 11 39 39 H 1.09004 * 113.61582 * 25.43575 * 19 12 11 40 40 H 0.96694 * 114.00078 * 82.50136 * 22 20 19 41 41 H 1.08998 * 113.61228 * 139.97682 * 23 20 19 42 42 H 1.09002 * 113.61191 * 270.88380 * 23 20 19 43 43 H 1.07998 * 123.35087 * 180.20610 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5162 0.0007 5 8 1.9691 3.1761 -1.2221 6 14 2.3245 3.4832 1.4363 7 16 3.8970 0.7893 0.0060 8 6 3.5938 -0.9427 -0.0010 9 6 4.6232 -1.9861 -0.0007 10 8 4.3002 -3.1596 -0.0002 11 7 5.9274 -1.6463 -0.0008 12 6 6.9547 -2.6836 -0.1210 13 6 7.1502 -3.4640 1.1532 14 6 7.8723 -4.6427 1.1380 15 6 8.0548 -5.3566 2.3076 16 6 7.5085 -4.8961 3.4910 17 6 6.7820 -3.7201 3.5052 18 6 6.6027 -3.0042 2.3363 19 6 8.2673 -2.1813 -0.7454 20 6 7.6644 -2.5451 -2.1125 21 1 8.3790 -2.9977 -2.7999 22 8 6.9165 -1.4835 -2.7091 23 6 6.7926 -3.5697 -1.3674 24 6 2.2446 -1.1601 -0.0006 25 1 -0.3633 -0.0838 1.0243 26 1 -0.3633 0.9289 -0.4395 27 1 -0.3633 -0.8451 -0.5846 28 1 0.5515 2.4502 0.0939 29 1 2.9198 3.2702 -1.3715 30 1 3.8046 3.5532 1.3378 31 1 1.7513 4.8530 1.4477 32 1 6.1857 -0.7146 0.0788 33 1 8.2966 -5.0041 0.2129 34 1 8.6221 -6.2756 2.2964 35 1 7.6489 -5.4552 4.4041 36 1 6.3548 -3.3605 4.4296 37 1 6.0351 -2.0854 2.3475 38 1 9.1362 -2.7823 -0.4776 39 1 8.4333 -1.1123 -0.6119 40 1 7.4593 -0.8359 -3.1792 41 1 5.7682 -3.6215 -1.7360 42 1 7.2585 -4.5503 -1.2696 43 1 1.8019 -2.1451 -0.0011 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_6739946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:52:26 Heat of formation + Delta-G solvation = -16.385970 kcal Electronic energy + Delta-G solvation = -28302.205755 eV Core-core repulsion = 24406.868267 eV Total energy + Delta-G solvation = -3895.337487 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.17927 -40.31325 -39.52894 -39.15087 -37.70127 -36.26236 -34.27649 -32.43546 -31.71603 -31.66435 -29.82636 -27.30402 -26.95501 -25.53747 -24.32315 -23.48033 -22.51335 -21.83201 -20.52020 -20.09630 -19.51046 -18.68441 -17.99705 -17.80131 -17.47812 -16.91753 -16.45988 -16.34071 -16.01232 -15.83617 -15.55067 -15.48667 -15.27036 -14.87465 -14.70700 -14.43292 -14.31318 -14.06250 -14.03764 -13.62888 -13.47853 -13.26071 -13.17783 -13.02144 -12.97627 -12.48394 -12.35919 -12.29664 -12.24425 -11.94060 -11.79571 -11.56786 -11.08997 -11.02017 -10.95927 -10.20074 -9.85304 -9.72864 -9.60409 -9.44848 -5.01098 -0.69618 0.26979 0.38304 0.46568 0.68326 1.08307 1.25935 1.50677 1.86494 1.88287 2.08133 2.76400 3.09728 3.24048 3.39975 3.50219 3.56879 3.63251 3.65160 3.83252 4.03860 4.08115 4.09606 4.22733 4.23291 4.33774 4.42946 4.47885 4.57671 4.60993 4.65695 4.77657 4.78494 4.80094 4.85611 4.94870 4.95940 4.98953 5.04038 5.12430 5.29964 5.34245 5.39503 5.53679 5.59666 5.69686 6.07063 6.29501 6.31020 6.87686 7.03051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.099 4.099 3 C -0.232 4.232 4 C -0.050 4.050 5 O -0.540 6.540 6 Si 0.740 3.260 7 S 0.224 5.776 8 C -0.276 4.276 9 C 0.595 3.405 10 O -0.557 6.557 11 N -0.686 5.686 12 C 0.188 3.812 13 C -0.084 4.084 14 C -0.121 4.121 15 C -0.124 4.124 16 C -0.132 4.132 17 C -0.131 4.131 18 C -0.123 4.123 19 C -0.147 4.147 20 C 0.086 3.914 21 H 0.096 0.904 22 O -0.566 6.566 23 C -0.139 4.139 24 C -0.057 4.057 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.141 0.859 29 H 0.384 0.616 30 H -0.259 1.259 31 H -0.277 1.277 32 H 0.407 0.593 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.397 0.603 41 H 0.054 0.946 42 H 0.118 0.882 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 2.622 1.551 5.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.112 4.112 3 C -0.351 4.351 4 C -0.161 4.161 5 O -0.348 6.348 6 Si 0.641 3.359 7 S 0.494 5.506 8 C -0.396 4.396 9 C 0.382 3.618 10 O -0.437 6.437 11 N -0.336 5.336 12 C 0.102 3.898 13 C -0.085 4.085 14 C -0.139 4.139 15 C -0.142 4.142 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.141 4.141 19 C -0.185 4.185 20 C 0.027 3.973 21 H 0.114 0.886 22 O -0.374 6.374 23 C -0.177 4.177 24 C -0.091 4.091 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.159 0.841 29 H 0.233 0.767 30 H -0.184 1.184 31 H -0.203 1.203 32 H 0.244 0.756 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.129 0.871 38 H 0.141 0.859 39 H 0.112 0.888 40 H 0.248 0.752 41 H 0.073 0.927 42 H 0.136 0.864 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.540 3.120 1.973 5.851 hybrid contribution -0.503 -0.267 -1.163 1.294 sum 4.037 2.853 0.810 5.009 Atomic orbital electron populations 1.20696 0.87693 1.03644 1.03987 1.18797 0.99136 0.90224 1.03053 1.24567 0.98781 1.01040 1.10724 1.24849 1.06218 0.89180 0.95820 1.86650 1.30099 1.79123 1.38882 0.93876 0.79185 0.79037 0.83800 1.82636 1.02999 0.96726 1.68252 1.24507 0.97878 0.97805 1.19385 1.17055 0.82152 0.87129 0.75420 1.90829 1.82167 1.19656 1.51039 1.45210 1.04045 1.10224 1.74110 1.20058 0.89588 0.88784 0.91404 1.19974 0.98238 0.96069 0.94246 1.21176 0.99269 0.94112 0.99342 1.21453 0.99796 1.00450 0.92497 1.21464 0.97884 0.96490 0.99200 1.21379 0.99212 0.95857 0.98428 1.21022 0.99801 1.00316 0.92973 1.24023 0.95069 1.03871 0.95550 1.22714 0.92973 0.88495 0.93141 0.88623 1.86494 1.38321 1.39238 1.73347 1.23573 1.01307 0.98571 0.94213 1.20782 0.91176 1.00397 0.96732 0.88929 0.90437 0.91030 0.84109 0.76698 1.18374 1.20307 0.75595 0.84032 0.83943 0.84488 0.85123 0.87128 0.85937 0.88759 0.75227 0.92670 0.86363 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.23 9.75 71.24 0.69 0.93 16 2 C -0.10 -0.20 5.78 -21.05 -0.12 -0.32 16 3 C -0.23 -0.12 4.80 24.68 0.12 0.00 16 4 C -0.05 0.07 2.78 71.23 0.20 0.27 16 5 O -0.54 -0.80 12.88 -148.98 -1.92 -2.72 16 6 Si 0.74 -2.30 32.18 68.60 2.21 -0.10 16 7 S 0.22 0.00 20.90 -56.49 -1.18 -1.18 16 8 C -0.28 -1.68 6.45 24.08 0.16 -1.52 16 9 C 0.60 5.60 6.65 86.42 0.57 6.17 16 10 O -0.56 -9.44 15.24 -4.38 -0.07 -9.51 16 11 N -0.69 -2.45 3.55 -427.95 -1.52 -3.97 16 12 C 0.19 0.47 0.95 3.39 0.00 0.47 16 13 C -0.08 -0.41 4.98 -19.87 -0.10 -0.51 16 14 C -0.12 -0.31 8.72 22.27 0.19 -0.12 16 15 C -0.12 -0.29 10.05 22.27 0.22 -0.06 16 16 C -0.13 -0.45 10.05 22.27 0.22 -0.22 16 17 C -0.13 -0.67 10.05 22.27 0.22 -0.44 16 18 C -0.12 -0.81 9.15 22.27 0.20 -0.61 16 19 C -0.15 0.63 7.14 31.12 0.22 0.85 16 20 C 0.09 -0.21 5.28 31.12 0.16 -0.04 16 21 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 22 O -0.57 0.31 13.09 -148.98 -1.95 -1.64 16 23 C -0.14 -0.50 6.52 31.12 0.20 -0.30 16 24 C -0.06 -0.33 9.80 21.72 0.21 -0.12 16 25 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.08 -0.26 6.45 -2.39 -0.02 -0.28 16 27 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.14 -0.53 5.99 -2.39 -0.01 -0.54 16 29 H 0.38 -1.53 8.70 -74.06 -0.64 -2.17 16 30 H -0.26 0.18 7.11 99.48 0.71 0.89 16 31 H -0.28 -0.85 7.11 99.48 0.71 -0.14 16 32 H 0.41 -0.26 7.88 -92.70 -0.73 -0.99 16 33 H 0.14 -0.32 6.54 -2.91 -0.02 -0.34 16 34 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 35 H 0.14 -0.09 8.06 -2.92 -0.02 -0.11 16 36 H 0.13 0.24 8.06 -2.91 -0.02 0.22 16 37 H 0.11 0.69 6.94 -2.91 -0.02 0.67 16 38 H 0.12 -0.86 7.79 -2.39 -0.02 -0.88 16 39 H 0.09 -0.61 8.13 -2.39 -0.02 -0.63 16 40 H 0.40 -3.72 9.12 -74.06 -0.68 -4.39 16 41 H 0.05 0.64 6.72 -2.39 -0.02 0.63 16 42 H 0.12 0.04 6.22 -2.39 -0.01 0.03 16 43 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 Total: 0.00 -21.48 368.06 -1.96 -23.43 By element: Atomic # 1 Polarization: -7.83 SS G_CDS: -0.93 Total: -8.75 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 3.39 Total: 4.44 kcal Atomic # 7 Polarization: -2.45 SS G_CDS: -1.52 Total: -3.97 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -3.94 Total: -13.87 kcal Atomic # 14 Polarization: -2.30 SS G_CDS: 2.21 Total: -0.10 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.18 Total: -1.18 kcal Total: -21.48 -1.96 -23.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_6739946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.049 kcal (2) G-P(sol) polarization free energy of solvation -21.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds