Wall clock time and date at job start Sat Mar 6 2021 23:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47386 * 2 1 4 4 C 1.50698 * 109.47096 * 239.99803 * 2 1 3 5 5 C 1.32771 * 124.71398 * 300.00607 * 4 2 1 6 6 C 1.44426 * 113.08540 * 179.97438 * 5 4 2 7 7 C 1.47189 * 123.45846 * 179.97438 * 6 5 4 8 8 O 1.21632 * 120.00385 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99639 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99773 * 185.02895 * 9 7 6 11 11 C 1.50702 * 112.84622 * 294.68223 * 10 9 7 12 12 C 1.38236 * 119.99601 * 134.08187 * 11 10 9 13 13 C 1.38239 * 119.99503 * 180.23060 * 12 11 10 14 14 C 1.38238 * 120.00113 * 359.49216 * 13 12 11 15 15 C 1.38231 * 120.00041 * 0.24909 * 14 13 12 16 16 C 1.38233 * 120.00157 * 313.79829 * 11 10 9 17 17 C 1.53782 * 113.61232 * 163.49058 * 10 9 7 18 18 C 1.53779 * 87.07943 * 270.79537 * 17 10 9 19 19 H 1.09002 * 113.61586 * 220.02255 * 18 17 10 20 20 O 1.42904 * 113.61415 * 89.11839 * 18 17 10 21 21 C 1.53780 * 87.08387 * 334.56766 * 18 17 10 22 22 C 1.36009 * 113.07468 * 0.26402 * 6 5 4 23 23 S 1.70441 * 110.82081 * 359.59381 * 22 6 5 24 24 H 0.96697 * 113.99730 * 300.00526 * 1 2 3 25 25 H 1.09003 * 109.46631 * 120.00099 * 2 1 3 26 26 H 1.48500 * 109.99773 * 299.99992 * 3 2 1 27 27 H 1.48503 * 109.99766 * 61.31620 * 3 2 1 28 28 H 1.08004 * 123.45534 * 0.02562 * 5 4 2 29 29 H 0.96999 * 120.00397 * 5.01978 * 9 7 6 30 30 H 1.07994 * 120.00370 * 359.97438 * 12 11 10 31 31 H 1.08000 * 119.99843 * 179.75865 * 13 12 11 32 32 H 1.07999 * 119.99649 * 180.27872 * 14 13 12 33 33 H 1.07998 * 119.99978 * 180.02562 * 15 14 13 34 34 H 1.08001 * 119.99854 * 0.02562 * 16 11 10 35 35 H 1.09000 * 113.61591 * 25.34701 * 17 10 9 36 36 H 1.09003 * 113.61405 * 156.16407 * 17 10 9 37 37 H 0.96703 * 113.99735 * 179.97438 * 20 18 17 38 38 H 1.08990 * 113.61542 * 270.88777 * 21 18 17 39 39 H 1.09004 * 113.61535 * 139.97690 * 21 18 17 40 40 H 1.08006 * 124.58877 * 179.71328 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6688 -1.9763 -1.5327 6 6 2.2771 -2.4005 -2.7721 7 6 2.1349 -3.7580 -3.3230 8 8 1.4776 -4.5903 -2.7275 9 7 2.7341 -4.0790 -4.4868 10 6 2.5036 -5.3936 -5.0911 11 6 3.0469 -6.5246 -4.2564 12 6 2.2747 -7.6484 -4.0287 13 6 2.7714 -8.6838 -3.2591 14 6 4.0441 -8.6000 -2.7261 15 6 4.8183 -7.4786 -2.9583 16 6 4.3197 -6.4409 -3.7235 17 6 2.9100 -5.4705 -6.5722 18 6 1.4816 -5.0094 -6.9068 19 1 1.0494 -5.5175 -7.7689 20 8 1.3383 -3.5890 -6.9687 21 6 1.0551 -5.6135 -5.5584 22 6 2.9999 -1.4185 -3.3746 23 16 2.9440 0.0208 -2.4633 24 1 -0.3933 0.4418 0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5616 2.4679 -1.2085 27 1 1.5879 2.4586 1.2242 28 1 1.0619 -2.6223 -0.9156 29 1 3.3178 -3.4397 -4.9244 30 1 1.2820 -7.7156 -4.4485 31 1 2.1667 -9.5601 -3.0779 32 1 4.4337 -9.4109 -2.1286 33 1 5.8127 -7.4133 -2.5422 34 1 4.9245 -5.5647 -3.9050 35 1 3.6783 -4.7498 -6.8522 36 1 3.1346 -6.4817 -6.9114 37 1 0.4420 -3.2929 -7.1791 38 1 0.7712 -6.6639 -5.6208 39 1 0.3259 -5.0081 -5.0199 40 1 3.5352 -1.5344 -4.3055 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12891110_6894386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:52:30 Heat of formation + Delta-G solvation = -10.257638 kcal Electronic energy + Delta-G solvation = -26160.987781 eV Core-core repulsion = 22421.453657 eV Total energy + Delta-G solvation = -3739.534124 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.091 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.01475 -40.01891 -39.20396 -38.53249 -37.12389 -36.17643 -33.99237 -31.91828 -31.62366 -31.43101 -27.10643 -26.91215 -26.38024 -24.84258 -23.25040 -22.51861 -21.78553 -20.47516 -20.14169 -18.79824 -18.55254 -18.44340 -17.91672 -17.81025 -16.85749 -16.27715 -16.19588 -15.75190 -15.64568 -15.62885 -15.18936 -15.09476 -14.69135 -14.21410 -14.13457 -13.90727 -13.78581 -13.68039 -13.62244 -13.46650 -13.31252 -12.87770 -12.68912 -12.41014 -12.31170 -11.99531 -11.93267 -11.80637 -11.48545 -10.92816 -10.71870 -10.60921 -9.98191 -9.85992 -9.68756 -9.49646 -9.38038 -5.13232 -0.25153 0.39961 0.52713 0.63247 0.75712 1.00445 1.21658 1.53410 1.85240 2.14241 2.51611 2.93462 2.96841 3.23909 3.46279 3.55783 3.65264 3.68596 3.76858 3.95014 4.07090 4.20459 4.20946 4.29092 4.31437 4.34681 4.42903 4.60242 4.65058 4.69663 4.73033 4.82058 4.86744 4.97530 5.01856 5.12471 5.17819 5.24385 5.32013 5.56301 5.67823 5.74308 5.83516 6.20275 6.35233 6.57679 6.62951 7.39490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.034 4.034 3 Si 0.647 3.353 4 C -0.199 4.199 5 C -0.054 4.054 6 C -0.152 4.152 7 C 0.582 3.418 8 O -0.522 6.522 9 N -0.695 5.695 10 C 0.202 3.798 11 C -0.073 4.073 12 C -0.103 4.103 13 C -0.119 4.119 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.106 4.106 17 C -0.124 4.124 18 C 0.080 3.920 19 H 0.074 0.926 20 O -0.548 6.548 21 C -0.173 4.173 22 C -0.205 4.205 23 S 0.201 5.799 24 H 0.383 0.617 25 H 0.087 0.913 26 H -0.234 1.234 27 H -0.238 1.238 28 H 0.154 0.846 29 H 0.402 0.598 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.383 0.617 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 1.626 -1.706 3.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.146 4.146 3 Si 0.545 3.455 4 C -0.315 4.315 5 C -0.083 4.083 6 C -0.170 4.170 7 C 0.368 3.632 8 O -0.398 6.398 9 N -0.347 5.347 10 C 0.115 3.885 11 C -0.074 4.074 12 C -0.121 4.121 13 C -0.137 4.137 14 C -0.138 4.138 15 C -0.138 4.138 16 C -0.124 4.124 17 C -0.162 4.162 18 C 0.021 3.979 19 H 0.092 0.908 20 O -0.354 6.354 21 C -0.212 4.212 22 C -0.343 4.343 23 S 0.467 5.533 24 H 0.231 0.769 25 H 0.104 0.896 26 H -0.158 1.158 27 H -0.161 1.161 28 H 0.171 0.829 29 H 0.237 0.763 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.231 0.769 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.775 3.008 -1.888 5.183 hybrid contribution -1.965 -1.318 0.405 2.400 sum 1.810 1.690 -1.483 2.887 Atomic orbital electron populations 1.86617 1.17373 1.80027 1.49910 1.24030 0.84531 1.09946 0.96055 0.95366 0.91718 0.75256 0.83179 1.23511 1.08204 0.97915 1.01909 1.20998 0.97996 0.94519 0.94771 1.20219 1.04249 0.94801 0.97762 1.17526 0.79182 0.86350 0.80182 1.90824 1.40114 1.49869 1.59015 1.45358 1.50033 1.15734 1.23536 1.19789 0.96152 0.81722 0.90874 1.19678 0.94298 0.94689 0.98733 1.21051 0.99282 0.93313 0.98496 1.21149 0.95945 0.98824 0.97770 1.21178 0.94659 0.98134 0.99832 1.21124 0.99943 0.93993 0.98784 1.20869 0.95260 0.98520 0.97745 1.23390 0.96902 1.03127 0.92785 1.22673 0.96914 0.82049 0.96287 0.90794 1.86411 1.35240 1.19995 1.93745 1.24119 0.96833 1.02785 0.97417 1.25785 1.04663 0.98803 1.05082 1.83006 1.46441 1.11202 1.12627 0.76890 0.89572 1.15817 1.16133 0.82863 0.76253 0.85829 0.86001 0.86122 0.86135 0.86624 0.89641 0.87004 0.76876 0.87874 0.89815 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.78 12.82 -35.23 -0.45 -1.23 16 2 C -0.03 -0.01 2.94 36.00 0.11 0.10 16 3 Si 0.65 -0.62 30.91 -169.99 -5.25 -5.87 16 4 C -0.20 -0.33 5.72 -36.18 -0.21 -0.54 16 5 C -0.05 -0.18 9.91 -39.02 -0.39 -0.56 16 6 C -0.15 -0.41 5.98 -104.63 -0.63 -1.03 16 7 C 0.58 2.29 7.29 -12.62 -0.09 2.20 16 8 O -0.52 -3.92 15.59 5.25 0.08 -3.84 16 9 N -0.70 -0.81 4.32 -49.06 -0.21 -1.02 16 10 C 0.20 0.20 0.82 -132.16 -0.11 0.09 16 11 C -0.07 -0.18 4.24 -104.62 -0.44 -0.62 16 12 C -0.10 -0.27 9.22 -39.58 -0.37 -0.63 16 13 C -0.12 -0.27 10.05 -39.58 -0.40 -0.67 16 14 C -0.12 -0.26 10.05 -39.58 -0.40 -0.66 16 15 C -0.12 -0.27 10.05 -39.58 -0.40 -0.66 16 16 C -0.11 -0.26 9.46 -39.58 -0.37 -0.63 16 17 C -0.12 0.12 7.19 -25.92 -0.19 -0.06 16 18 C 0.08 -0.08 5.28 -25.92 -0.14 -0.21 16 19 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 20 O -0.55 0.24 13.09 -35.23 -0.46 -0.22 16 21 C -0.17 -0.11 6.38 -25.92 -0.17 -0.28 16 22 C -0.21 -0.01 10.38 29.93 0.31 0.30 16 23 S 0.20 -0.05 20.18 -107.50 -2.17 -2.22 16 24 H 0.38 -1.07 8.74 45.56 0.40 -0.68 16 25 H 0.09 -0.13 7.96 -51.93 -0.41 -0.54 16 26 H -0.23 -0.42 7.11 56.52 0.40 -0.02 16 27 H -0.24 -0.11 7.11 56.52 0.40 0.29 16 28 H 0.15 0.65 8.06 -52.48 -0.42 0.22 16 29 H 0.40 -0.34 7.17 -40.82 -0.29 -0.63 16 30 H 0.12 0.15 5.70 -52.49 -0.30 -0.15 16 31 H 0.12 0.06 8.06 -52.49 -0.42 -0.36 16 32 H 0.12 0.04 8.06 -52.49 -0.42 -0.38 16 33 H 0.12 0.05 8.06 -52.49 -0.42 -0.37 16 34 H 0.12 0.13 8.02 -52.49 -0.42 -0.29 16 35 H 0.08 -0.11 8.09 -51.93 -0.42 -0.53 16 36 H 0.11 -0.21 8.09 -51.93 -0.42 -0.63 16 37 H 0.38 -1.29 9.12 45.56 0.42 -0.88 16 38 H 0.10 -0.04 5.85 -51.93 -0.30 -0.34 16 39 H 0.08 0.24 7.57 -51.93 -0.39 -0.15 16 40 H 0.17 -0.45 7.02 -52.48 -0.37 -0.81 16 LS Contribution 349.78 15.07 5.27 5.27 Total: 0.00 -8.97 349.78 -10.89 -19.86 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: -3.83 Total: -6.86 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.87 Total: -3.87 kcal Atomic # 7 Polarization: -0.81 SS G_CDS: -0.21 Total: -1.02 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.83 Total: -5.29 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.25 Total: -5.87 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.17 Total: -2.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -8.97 -10.89 -19.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_6894386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.604 kcal (2) G-P(sol) polarization free energy of solvation -8.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds