Wall clock time and date at job start Sat Mar 6 2021 23:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47386 * 2 1 4 4 C 1.50698 * 109.47096 * 239.99803 * 2 1 3 5 5 C 1.32771 * 124.71398 * 300.00607 * 4 2 1 6 6 C 1.44426 * 113.08540 * 179.97438 * 5 4 2 7 7 C 1.47189 * 123.45846 * 179.97438 * 6 5 4 8 8 O 1.21632 * 120.00385 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99639 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99773 * 185.02895 * 9 7 6 11 11 C 1.50702 * 112.84622 * 294.68223 * 10 9 7 12 12 C 1.38236 * 119.99601 * 134.08187 * 11 10 9 13 13 C 1.38239 * 119.99503 * 180.23060 * 12 11 10 14 14 C 1.38238 * 120.00113 * 359.49216 * 13 12 11 15 15 C 1.38231 * 120.00041 * 0.24909 * 14 13 12 16 16 C 1.38233 * 120.00157 * 313.79829 * 11 10 9 17 17 C 1.53782 * 113.61232 * 163.49058 * 10 9 7 18 18 C 1.53779 * 87.07943 * 270.79537 * 17 10 9 19 19 H 1.09002 * 113.61586 * 220.02255 * 18 17 10 20 20 O 1.42904 * 113.61415 * 89.11839 * 18 17 10 21 21 C 1.53780 * 87.08387 * 334.56766 * 18 17 10 22 22 C 1.36009 * 113.07468 * 0.26402 * 6 5 4 23 23 S 1.70441 * 110.82081 * 359.59381 * 22 6 5 24 24 H 0.96697 * 113.99730 * 300.00526 * 1 2 3 25 25 H 1.09003 * 109.46631 * 120.00099 * 2 1 3 26 26 H 1.48500 * 109.99773 * 299.99992 * 3 2 1 27 27 H 1.48503 * 109.99766 * 61.31620 * 3 2 1 28 28 H 1.08004 * 123.45534 * 0.02562 * 5 4 2 29 29 H 0.96999 * 120.00397 * 5.01978 * 9 7 6 30 30 H 1.07994 * 120.00370 * 359.97438 * 12 11 10 31 31 H 1.08000 * 119.99843 * 179.75865 * 13 12 11 32 32 H 1.07999 * 119.99649 * 180.27872 * 14 13 12 33 33 H 1.07998 * 119.99978 * 180.02562 * 15 14 13 34 34 H 1.08001 * 119.99854 * 0.02562 * 16 11 10 35 35 H 1.09000 * 113.61591 * 25.34701 * 17 10 9 36 36 H 1.09003 * 113.61405 * 156.16407 * 17 10 9 37 37 H 0.96703 * 113.99735 * 179.97438 * 20 18 17 38 38 H 1.08990 * 113.61542 * 270.88777 * 21 18 17 39 39 H 1.09004 * 113.61535 * 139.97690 * 21 18 17 40 40 H 1.08006 * 124.58877 * 179.71328 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6688 -1.9763 -1.5327 6 6 2.2771 -2.4005 -2.7721 7 6 2.1349 -3.7580 -3.3230 8 8 1.4776 -4.5903 -2.7275 9 7 2.7341 -4.0790 -4.4868 10 6 2.5036 -5.3936 -5.0911 11 6 3.0469 -6.5246 -4.2564 12 6 2.2747 -7.6484 -4.0287 13 6 2.7714 -8.6838 -3.2591 14 6 4.0441 -8.6000 -2.7261 15 6 4.8183 -7.4786 -2.9583 16 6 4.3197 -6.4409 -3.7235 17 6 2.9100 -5.4705 -6.5722 18 6 1.4816 -5.0094 -6.9068 19 1 1.0494 -5.5175 -7.7689 20 8 1.3383 -3.5890 -6.9687 21 6 1.0551 -5.6135 -5.5584 22 6 2.9999 -1.4185 -3.3746 23 16 2.9440 0.0208 -2.4633 24 1 -0.3933 0.4418 0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5616 2.4679 -1.2085 27 1 1.5879 2.4586 1.2242 28 1 1.0619 -2.6223 -0.9156 29 1 3.3178 -3.4397 -4.9244 30 1 1.2820 -7.7156 -4.4485 31 1 2.1667 -9.5601 -3.0779 32 1 4.4337 -9.4109 -2.1286 33 1 5.8127 -7.4133 -2.5422 34 1 4.9245 -5.5647 -3.9050 35 1 3.6783 -4.7498 -6.8522 36 1 3.1346 -6.4817 -6.9114 37 1 0.4420 -3.2929 -7.1791 38 1 0.7712 -6.6639 -5.6208 39 1 0.3259 -5.0081 -5.0199 40 1 3.5352 -1.5344 -4.3055 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_6894386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:52:29 Heat of formation + Delta-G solvation = -11.279716 kcal Electronic energy + Delta-G solvation = -26161.032102 eV Core-core repulsion = 22421.453657 eV Total energy + Delta-G solvation = -3739.578444 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.091 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.09996 -40.17984 -39.26284 -38.63284 -37.24016 -36.20690 -34.13452 -32.01271 -31.72211 -31.53020 -27.11503 -26.97645 -26.46975 -24.92587 -23.36739 -22.59986 -21.87300 -20.53257 -20.30164 -18.83157 -18.57341 -18.50979 -18.02141 -17.84825 -16.93470 -16.34651 -16.26514 -15.87130 -15.80748 -15.76063 -15.27943 -15.16093 -14.77793 -14.30935 -14.18759 -13.96977 -13.86353 -13.74206 -13.69492 -13.51590 -13.35971 -12.93998 -12.75299 -12.47702 -12.36958 -12.05638 -12.02134 -11.87623 -11.50347 -11.04650 -10.82317 -10.64980 -10.13558 -9.93772 -9.83735 -9.62200 -9.43524 -5.07251 -0.33332 0.36036 0.39353 0.48160 0.68906 0.83477 1.20267 1.56862 1.87062 2.04099 2.30386 2.82024 3.07839 3.28512 3.44983 3.55377 3.62272 3.66442 3.77654 3.94357 4.00113 4.10600 4.12083 4.22643 4.27322 4.36532 4.40657 4.59629 4.62241 4.69186 4.71860 4.75924 4.86139 4.94375 4.97849 4.99153 5.06805 5.13604 5.16248 5.45025 5.54700 5.60174 5.71159 6.08673 6.49595 6.51589 6.79954 7.21064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.051 4.051 3 Si 0.726 3.274 4 C -0.211 4.211 5 C -0.078 4.078 6 C -0.180 4.180 7 C 0.580 3.420 8 O -0.570 6.570 9 N -0.681 5.681 10 C 0.192 3.808 11 C -0.080 4.080 12 C -0.121 4.121 13 C -0.131 4.131 14 C -0.133 4.133 15 C -0.131 4.131 16 C -0.119 4.119 17 C -0.115 4.115 18 C 0.088 3.912 19 H 0.093 0.907 20 O -0.561 6.561 21 C -0.176 4.176 22 C -0.191 4.191 23 S 0.250 5.750 24 H 0.398 0.602 25 H 0.101 0.899 26 H -0.269 1.269 27 H -0.255 1.255 28 H 0.130 0.870 29 H 0.412 0.588 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.395 0.605 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 2.646 -2.735 5.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.161 4.161 3 Si 0.627 3.373 4 C -0.327 4.327 5 C -0.108 4.108 6 C -0.197 4.197 7 C 0.367 3.633 8 O -0.450 6.450 9 N -0.332 5.332 10 C 0.105 3.895 11 C -0.081 4.081 12 C -0.139 4.139 13 C -0.149 4.149 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.138 4.138 17 C -0.153 4.153 18 C 0.029 3.971 19 H 0.111 0.889 20 O -0.368 6.368 21 C -0.215 4.215 22 C -0.329 4.329 23 S 0.516 5.484 24 H 0.249 0.751 25 H 0.119 0.881 26 H -0.195 1.195 27 H -0.180 1.180 28 H 0.148 0.852 29 H 0.250 0.750 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.112 0.888 36 H 0.141 0.859 37 H 0.245 0.755 38 H 0.128 0.872 39 H 0.074 0.926 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.122 4.028 -2.929 7.144 hybrid contribution -2.413 -1.580 0.747 2.979 sum 2.709 2.449 -2.181 4.254 Atomic orbital electron populations 1.86570 1.18270 1.80710 1.51197 1.24419 0.84104 1.11448 0.96128 0.94504 0.90313 0.72344 0.80171 1.23832 1.08256 0.97709 1.02921 1.20937 0.99101 0.95191 0.95545 1.20123 1.06292 0.94971 0.98356 1.17778 0.78609 0.86488 0.80455 1.90788 1.42417 1.51283 1.60494 1.45249 1.49264 1.16039 1.22625 1.19978 0.96573 0.81141 0.91825 1.19893 0.94387 0.95052 0.98812 1.21271 0.99766 0.93784 0.99055 1.21421 0.96394 0.99339 0.97731 1.21449 0.94745 0.98754 1.00110 1.21407 1.00749 0.93986 0.98717 1.21085 0.95546 0.99064 0.98057 1.23399 0.97125 1.04036 0.90707 1.22674 0.96767 0.81948 0.95758 0.88924 1.86368 1.36444 1.20244 1.93771 1.24148 0.95954 1.02915 0.98458 1.26123 1.03020 0.98205 1.05584 1.82834 1.44679 1.09922 1.10967 0.75069 0.88144 1.19542 1.17967 0.85235 0.74995 0.85267 0.84697 0.84589 0.84620 0.85668 0.88799 0.85899 0.75527 0.87233 0.92560 0.78224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.20 12.82 -148.98 -1.91 -4.11 16 2 C -0.05 -0.04 2.94 71.24 0.21 0.17 16 3 Si 0.73 -1.79 30.91 68.60 2.12 0.33 16 4 C -0.21 -0.86 5.72 24.51 0.14 -0.72 16 5 C -0.08 -0.69 9.91 22.67 0.22 -0.46 16 6 C -0.18 -1.18 5.98 -19.87 -0.12 -1.30 16 7 C 0.58 5.63 7.29 86.59 0.63 6.26 16 8 O -0.57 -10.36 15.59 -4.13 -0.06 -10.42 16 9 N -0.68 -2.00 4.32 -427.36 -1.85 -3.84 16 10 C 0.19 0.50 0.82 3.38 0.00 0.50 16 11 C -0.08 -0.48 4.24 -19.87 -0.08 -0.57 16 12 C -0.12 -0.79 9.22 22.27 0.21 -0.58 16 13 C -0.13 -0.74 10.05 22.27 0.22 -0.52 16 14 C -0.13 -0.67 10.05 22.27 0.22 -0.44 16 15 C -0.13 -0.65 10.05 22.27 0.22 -0.43 16 16 C -0.12 -0.66 9.46 22.27 0.21 -0.45 16 17 C -0.12 0.32 7.19 31.12 0.22 0.54 16 18 C 0.09 -0.21 5.28 31.12 0.16 -0.05 16 19 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 20 O -0.56 0.84 13.09 -148.98 -1.95 -1.11 16 21 C -0.18 -0.42 6.38 31.12 0.20 -0.22 16 22 C -0.19 0.10 10.38 67.30 0.70 0.80 16 23 S 0.25 -0.34 20.18 -56.49 -1.14 -1.48 16 24 H 0.40 -1.95 8.74 -74.06 -0.65 -2.60 16 25 H 0.10 -0.26 7.96 -2.39 -0.02 -0.28 16 26 H -0.27 -0.90 7.11 99.48 0.71 -0.19 16 27 H -0.26 -0.08 7.11 99.48 0.71 0.62 16 28 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 29 H 0.41 -0.90 7.17 -92.71 -0.66 -1.56 16 30 H 0.13 0.54 5.70 -2.91 -0.02 0.52 16 31 H 0.14 0.25 8.06 -2.91 -0.02 0.23 16 32 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 33 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 34 H 0.13 0.32 8.02 -2.91 -0.02 0.29 16 35 H 0.09 -0.39 8.09 -2.39 -0.02 -0.41 16 36 H 0.12 -0.59 8.09 -2.39 -0.02 -0.61 16 37 H 0.39 -2.80 9.12 -74.06 -0.68 -3.47 16 38 H 0.11 0.04 5.85 -2.39 -0.01 0.03 16 39 H 0.06 0.46 7.57 -2.39 -0.02 0.44 16 40 H 0.20 -1.45 7.02 -2.91 -0.02 -1.47 16 Total: 0.00 -23.09 349.78 -2.25 -25.34 By element: Atomic # 1 Polarization: -6.40 SS G_CDS: -0.84 Total: -7.24 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 3.38 Total: 2.53 kcal Atomic # 7 Polarization: -2.00 SS G_CDS: -1.85 Total: -3.84 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -3.93 Total: -15.64 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: 2.12 Total: 0.33 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -1.14 Total: -1.48 kcal Total: -23.09 -2.25 -25.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_6894386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.065 kcal (2) G-P(sol) polarization free energy of solvation -23.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds