Wall clock time and date at job start Sat Mar 6 2021 23:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37935 * 120.07583 * 2 1 4 4 C 1.38380 * 120.14360 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.85306 * 179.97438 * 4 3 2 6 6 C 1.38342 * 120.29407 * 359.97438 * 4 3 2 7 7 C 1.50692 * 119.92546 * 180.02562 * 6 4 3 8 8 O 1.42902 * 109.47440 * 74.99915 * 7 6 4 9 9 Si 1.86297 * 109.46889 * 194.99650 * 7 6 4 10 10 C 1.37976 * 120.14134 * 0.28860 * 6 4 3 11 11 C 1.39553 * 119.85646 * 359.46572 * 10 6 4 12 12 C 1.47843 * 120.14680 * 180.29433 * 11 10 6 13 13 O 1.21559 * 119.99946 * 186.51740 * 12 11 10 14 14 N 1.34776 * 120.00006 * 6.51122 * 12 11 10 15 15 C 1.46503 * 119.99838 * 185.30627 * 14 12 11 16 16 C 1.50702 * 112.84651 * 283.58650 * 15 14 12 17 17 C 1.38237 * 119.99926 * 2.69384 * 16 15 14 18 18 C 1.38237 * 119.99737 * 179.76414 * 17 16 15 19 19 C 1.38238 * 120.00218 * 0.50642 * 18 17 16 20 20 C 1.38236 * 119.99723 * 359.74618 * 19 18 17 21 21 C 1.38231 * 119.99870 * 182.96319 * 16 15 14 22 22 C 1.53782 * 113.61352 * 152.28839 * 15 14 12 23 23 C 1.53784 * 87.07785 * 270.87669 * 22 15 14 24 24 H 1.09001 * 113.69498 * 220.00497 * 23 22 15 25 25 O 1.42905 * 113.61148 * 89.11776 * 23 22 15 26 26 C 1.53778 * 113.61698 * 54.78603 * 15 14 12 27 27 H 1.08996 * 109.46694 * 96.97429 * 1 2 3 28 28 H 1.08997 * 109.47152 * 216.98070 * 1 2 3 29 29 H 1.09000 * 109.46482 * 336.97586 * 1 2 3 30 30 H 1.07999 * 119.92815 * 359.95516 * 3 2 1 31 31 H 1.09002 * 109.47044 * 269.98389 * 5 4 3 32 32 H 1.09007 * 109.46932 * 29.97806 * 5 4 3 33 33 H 1.09000 * 109.46895 * 149.98050 * 5 4 3 34 34 H 1.08999 * 109.47434 * 314.99514 * 7 6 4 35 35 H 0.96696 * 113.99680 * 180.02562 * 8 7 6 36 36 H 1.48499 * 110.00147 * 299.99906 * 9 7 6 37 37 H 1.48500 * 110.00271 * 61.31896 * 9 7 6 38 38 H 1.08000 * 120.06919 * 179.70568 * 10 6 4 39 39 H 0.97000 * 119.99865 * 5.30491 * 14 12 11 40 40 H 1.07998 * 120.00254 * 359.97438 * 17 16 15 41 41 H 1.07995 * 120.00376 * 180.23174 * 18 17 16 42 42 H 1.08001 * 120.00288 * 179.72664 * 19 18 17 43 43 H 1.07999 * 120.00144 * 179.97438 * 20 19 18 44 44 H 1.07996 * 120.00423 * 0.02562 * 21 16 15 45 45 H 1.09003 * 113.61486 * 25.42420 * 22 15 14 46 46 H 1.08999 * 113.61672 * 156.33239 * 22 15 14 47 47 H 0.96697 * 114.00291 * 82.50037 * 25 23 22 48 48 H 1.09007 * 113.61294 * 203.66487 * 26 15 14 49 49 H 1.09000 * 113.61529 * 334.48186 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1936 0.0000 4 6 3.5822 1.1953 0.0005 5 6 4.3308 2.5032 -0.0001 6 6 4.2814 0.0016 0.0016 7 6 5.7883 0.0131 0.0028 8 8 6.2610 0.3660 1.3043 9 14 6.4225 -1.6790 -0.4505 10 6 3.6021 -1.1993 -0.0039 11 6 2.2066 -1.2081 0.0008 12 6 1.4722 -2.4912 0.0016 13 8 0.2621 -2.4990 -0.1139 14 7 2.1443 -3.6523 0.1301 15 6 1.4323 -4.9275 0.0145 16 6 0.6332 -5.2653 1.2468 17 6 0.5856 -4.3768 2.3048 18 6 -0.1513 -4.6845 3.4331 19 6 -0.8322 -5.8853 3.5077 20 6 -0.7804 -6.7760 2.4519 21 6 -0.0476 -6.4660 1.3214 22 6 2.3156 -6.0831 -0.4850 23 6 1.9144 -5.6690 -1.9107 24 1 1.7258 -6.5123 -2.5751 25 8 2.7816 -4.6909 -2.4881 26 6 0.6379 -5.0731 -1.2940 27 1 -0.3632 -0.1248 -1.0200 28 1 -0.3633 -0.8209 0.6182 29 1 -0.3632 0.9458 0.4020 30 1 1.6584 2.1290 -0.0007 31 1 4.5119 2.8177 -1.0279 32 1 3.7384 3.2611 0.5127 33 1 5.2833 2.3768 0.5145 34 1 6.1467 0.7421 -0.7240 35 1 7.2247 0.3935 1.3786 36 1 5.9408 -2.6821 0.5328 37 1 5.9642 -2.0445 -1.8149 38 1 4.1491 -2.1305 -0.0078 39 1 3.0994 -3.6437 0.2992 40 1 1.1215 -3.4408 2.2484 41 1 -0.1916 -3.9888 4.2581 42 1 -1.4044 -6.1276 4.3911 43 1 -1.3120 -7.7143 2.5103 44 1 -0.0066 -7.1622 0.4968 45 1 3.3758 -5.9457 -0.2725 46 1 1.9493 -7.0685 -0.1972 47 1 3.5862 -5.0596 -2.8776 48 1 -0.1871 -5.7825 -1.2274 49 1 0.3424 -4.1205 -1.7338 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_9599494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:52:38 Heat of formation + Delta-G solvation = -19.760315 kcal Electronic energy + Delta-G solvation = -32792.135275 eV Core-core repulsion = 28651.961600 eV Total energy + Delta-G solvation = -4140.173675 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.42406 -41.19356 -39.64756 -39.26506 -37.60366 -36.39922 -34.73282 -34.50579 -33.13710 -31.80954 -31.72450 -29.46804 -28.61022 -27.06713 -26.02768 -25.42578 -23.84991 -23.63279 -22.91121 -22.24560 -21.00110 -20.33647 -18.88385 -18.69486 -18.40025 -18.01256 -17.45376 -16.78090 -16.56671 -16.48783 -16.27476 -16.15733 -15.60952 -15.44109 -15.17186 -15.01001 -14.94769 -14.75335 -14.58046 -14.37156 -14.13916 -13.99300 -13.94955 -13.67134 -13.51087 -13.31976 -13.19045 -13.01353 -12.91732 -12.74210 -12.65426 -12.41715 -12.28669 -12.11471 -12.02098 -11.91156 -11.54226 -11.09143 -10.72164 -10.29735 -10.23923 -10.03138 -9.91140 -9.73030 -9.66111 -4.99465 -0.37267 0.02172 0.32135 0.40347 1.25504 1.57658 1.66153 1.86842 1.92661 2.50578 2.70376 3.02121 3.25622 3.33371 3.40085 3.47002 3.53252 3.58362 3.68954 3.75669 3.87556 3.95865 4.02435 4.03493 4.12051 4.17988 4.27697 4.37098 4.42632 4.48185 4.52434 4.55220 4.56745 4.58928 4.65883 4.71696 4.73559 4.76040 4.79827 4.88253 4.89769 4.95165 4.98158 5.05635 5.06632 5.19846 5.30963 5.36430 5.37886 5.47830 5.53544 5.66211 5.70082 6.00962 6.27021 6.76764 6.90893 7.02575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.028 4.028 3 C -0.136 4.136 4 C -0.031 4.031 5 C -0.123 4.123 6 C -0.107 4.107 7 C -0.074 4.074 8 O -0.558 6.558 9 Si 0.762 3.238 10 C -0.088 4.088 11 C -0.164 4.164 12 C 0.562 3.438 13 O -0.544 6.544 14 N -0.693 5.693 15 C 0.186 3.814 16 C -0.085 4.085 17 C -0.121 4.121 18 C -0.134 4.134 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.151 4.151 23 C 0.086 3.914 24 H 0.100 0.900 25 O -0.569 6.569 26 C -0.132 4.132 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.403 0.597 36 H -0.287 1.287 37 H -0.288 1.288 38 H 0.124 0.876 39 H 0.402 0.598 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.087 0.913 46 H 0.129 0.871 47 H 0.396 0.604 48 H 0.118 0.882 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.564 -1.787 -1.255 7.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.029 4.029 3 C -0.153 4.153 4 C -0.031 4.031 5 C -0.179 4.179 6 C -0.107 4.107 7 C -0.184 4.184 8 O -0.369 6.369 9 Si 0.668 3.332 10 C -0.106 4.106 11 C -0.167 4.167 12 C 0.352 3.648 13 O -0.424 6.424 14 N -0.343 5.343 15 C 0.099 3.901 16 C -0.086 4.086 17 C -0.139 4.139 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.189 4.189 23 C 0.027 3.973 24 H 0.118 0.882 25 O -0.377 6.377 26 C -0.170 4.170 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.171 0.829 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.255 0.745 36 H -0.214 1.214 37 H -0.215 1.215 38 H 0.142 0.858 39 H 0.238 0.762 40 H 0.115 0.885 41 H 0.143 0.857 42 H 0.157 0.843 43 H 0.166 0.834 44 H 0.166 0.834 45 H 0.105 0.895 46 H 0.147 0.853 47 H 0.246 0.754 48 H 0.136 0.864 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.429 -2.180 -1.264 5.985 hybrid contribution 0.147 0.218 0.042 0.266 sum 5.576 -1.962 -1.222 6.036 Atomic orbital electron populations 1.20984 0.89713 1.03272 1.03006 1.20267 0.97225 0.91791 0.93652 1.21291 0.93803 0.98023 1.02229 1.20361 0.93548 0.96181 0.93051 1.21022 1.01044 0.92047 1.03753 1.19484 0.95371 0.92451 1.03389 1.24713 0.91305 1.12746 0.89623 1.86466 1.29116 1.92796 1.28474 0.94560 0.89046 0.73459 0.76154 1.21171 0.93175 0.97934 0.98331 1.19758 0.93510 0.93520 1.09871 1.18275 0.86872 0.83928 0.75766 1.90727 1.14286 1.87313 1.50032 1.45367 1.11735 1.04349 1.72869 1.20097 0.93727 0.84223 0.92008 1.19984 0.98790 0.95128 0.94723 1.20949 0.99852 0.98796 0.94343 1.21338 0.97790 0.97983 0.98079 1.21458 0.99428 0.93966 0.99893 1.21480 0.98801 1.00371 0.93240 1.21171 0.97119 0.95984 0.99219 1.24091 1.00551 0.97930 0.96346 1.22753 0.90390 0.91097 0.93104 0.88224 1.86503 1.36736 1.36442 1.78016 1.23496 0.97181 1.02385 0.93950 0.91233 0.90642 0.90375 0.82893 0.89257 0.90243 0.89486 0.88528 0.74519 1.21431 1.21455 0.85849 0.76200 0.88539 0.85734 0.84313 0.83444 0.83440 0.89463 0.85332 0.75414 0.86361 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 8.72 71.24 0.62 -0.45 16 2 C -0.03 -0.28 5.91 -19.60 -0.12 -0.40 16 3 C -0.14 -0.79 9.31 22.23 0.21 -0.59 16 4 C -0.03 -0.14 5.89 -19.81 -0.12 -0.26 16 5 C -0.12 0.16 9.31 71.24 0.66 0.82 16 6 C -0.11 -0.61 5.29 -19.90 -0.11 -0.71 16 7 C -0.07 0.09 1.87 71.23 0.13 0.22 16 8 O -0.56 1.03 11.89 -148.98 -1.77 -0.74 16 9 Si 0.76 -2.11 30.18 68.60 2.07 -0.04 16 10 C -0.09 -0.74 8.11 22.52 0.18 -0.56 16 11 C -0.16 -1.86 5.87 -20.09 -0.12 -1.98 16 12 C 0.56 7.14 5.77 86.79 0.50 7.64 16 13 O -0.54 -9.40 11.32 -3.90 -0.04 -9.45 16 14 N -0.69 -5.44 3.78 -426.75 -1.61 -7.05 16 15 C 0.19 0.95 0.97 3.38 0.00 0.96 16 16 C -0.08 -0.60 5.14 -19.87 -0.10 -0.70 16 17 C -0.12 -1.27 8.79 22.27 0.20 -1.07 16 18 C -0.13 -1.09 10.05 22.27 0.22 -0.86 16 19 C -0.13 -0.62 10.05 22.27 0.22 -0.40 16 20 C -0.12 -0.33 10.05 22.27 0.22 -0.11 16 21 C -0.12 -0.35 8.41 22.27 0.19 -0.16 16 22 C -0.15 0.29 7.07 31.12 0.22 0.51 16 23 C 0.09 -0.03 5.28 31.12 0.16 0.13 16 24 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 25 O -0.57 -1.42 13.09 -148.98 -1.95 -3.37 16 26 C -0.13 -0.71 6.56 31.12 0.20 -0.51 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 1.04 5.89 -2.39 -0.01 1.03 16 29 H 0.08 0.37 8.04 -2.39 -0.02 0.36 16 30 H 0.15 0.14 8.05 -2.91 -0.02 0.12 16 31 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.08 -0.21 8.08 -2.38 -0.02 -0.23 16 33 H 0.09 -0.15 6.18 -2.39 -0.01 -0.16 16 34 H 0.10 -0.53 7.37 -2.39 -0.02 -0.55 16 35 H 0.40 -5.02 8.74 -74.06 -0.65 -5.67 16 36 H -0.29 -0.84 6.75 99.48 0.67 -0.16 16 37 H -0.29 -0.96 7.11 99.48 0.71 -0.26 16 38 H 0.12 0.80 3.34 -2.91 -0.01 0.79 16 39 H 0.40 2.22 6.89 -92.71 -0.64 1.58 16 40 H 0.10 1.25 6.16 -2.91 -0.02 1.23 16 41 H 0.12 0.72 8.06 -2.91 -0.02 0.69 16 42 H 0.14 0.07 8.06 -2.91 -0.02 0.05 16 43 H 0.15 -0.38 8.06 -2.91 -0.02 -0.40 16 44 H 0.15 -0.44 6.74 -2.91 -0.02 -0.46 16 45 H 0.09 -0.26 8.13 -2.39 -0.02 -0.28 16 46 H 0.13 -0.76 6.78 -2.39 -0.02 -0.78 16 47 H 0.40 -2.46 9.12 -74.06 -0.68 -3.14 16 48 H 0.12 0.23 7.16 -2.38 -0.02 0.21 16 49 H 0.06 0.75 6.64 -2.39 -0.02 0.74 16 Total: 0.00 -23.77 384.43 -0.85 -24.62 By element: Atomic # 1 Polarization: -4.55 SS G_CDS: -0.94 Total: -5.48 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 3.40 Total: 1.52 kcal Atomic # 7 Polarization: -5.44 SS G_CDS: -1.61 Total: -7.05 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -3.77 Total: -13.56 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: 2.07 Total: -0.04 kcal Total: -23.77 -0.85 -24.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_9599494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.858 kcal (2) G-P(sol) polarization free energy of solvation -23.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds