Wall clock time and date at job start Sat Mar 6 2021 23:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86303 * 109.47340 * 2 1 4 4 C 1.50710 * 109.47096 * 119.99674 * 2 1 3 5 5 C 1.34225 * 126.50159 * 255.02466 * 4 2 1 6 6 N 1.36835 * 109.93816 * 180.02562 * 5 4 2 7 7 C 1.46505 * 125.06569 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46614 * 265.02382 * 7 6 5 9 9 O 1.21279 * 120.00395 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99831 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00451 * 185.22848 * 10 8 7 12 12 C 1.50705 * 112.90415 * 54.36536 * 11 10 8 13 13 C 1.38233 * 120.00230 * 215.71797 * 12 11 10 14 14 C 1.38234 * 119.99941 * 179.81724 * 13 12 11 15 15 C 1.38231 * 119.99911 * 0.39131 * 14 13 12 16 16 C 1.38237 * 120.00215 * 359.86485 * 15 14 13 17 17 C 1.38235 * 119.99922 * 359.94924 * 16 15 14 18 18 C 1.53954 * 113.61583 * 283.04570 * 11 10 8 19 19 C 1.53779 * 87.11063 * 270.83982 * 18 11 10 20 20 H 1.09001 * 113.68554 * 220.07612 * 19 18 11 21 21 O 1.42897 * 113.61569 * 89.18622 * 19 18 11 22 22 C 1.53777 * 113.61814 * 185.62019 * 11 10 8 23 23 C 1.37690 * 109.87478 * 0.26225 * 6 5 4 24 24 C 1.39079 * 133.51699 * 179.73449 * 23 6 5 25 25 C 1.37788 * 119.78323 * 180.02562 * 24 23 6 26 26 C 1.38795 * 120.66142 * 359.97438 * 25 24 23 27 27 C 1.36667 * 120.52883 * 359.58408 * 26 25 24 28 28 C 1.39586 * 119.76133 * 0.65025 * 27 26 25 29 29 H 0.96702 * 113.99672 * 59.99990 * 1 2 3 30 30 H 1.08994 * 109.47609 * 239.99882 * 2 1 3 31 31 H 1.48490 * 110.00022 * 298.67997 * 3 2 1 32 32 H 1.48497 * 110.00013 * 59.99974 * 3 2 1 33 33 H 1.08004 * 125.03738 * 359.97438 * 5 4 2 34 34 H 1.08994 * 109.46913 * 145.02156 * 7 6 5 35 35 H 1.09001 * 109.46938 * 25.02355 * 7 6 5 36 36 H 0.97007 * 119.99394 * 5.23177 * 10 8 7 37 37 H 1.08003 * 119.99864 * 359.97438 * 13 12 11 38 38 H 1.07997 * 119.99657 * 180.23366 * 14 13 12 39 39 H 1.08003 * 119.99684 * 179.83808 * 15 14 13 40 40 H 1.07995 * 119.99788 * 179.97438 * 16 15 14 41 41 H 1.07997 * 120.00164 * 180.02562 * 17 16 15 42 42 H 1.08998 * 113.53745 * 156.28540 * 18 11 10 43 43 H 1.09000 * 113.73977 * 25.42097 * 18 11 10 44 44 H 0.96707 * 113.99920 * 82.49797 * 21 19 18 45 45 H 1.08996 * 113.61287 * 334.56861 * 22 11 10 46 46 H 1.09007 * 113.61346 * 203.74933 * 22 11 10 47 47 H 1.08005 * 120.11072 * 359.97438 * 24 23 6 48 48 H 1.07994 * 119.67195 * 179.97438 * 25 24 23 49 49 H 1.08001 * 119.73009 * 179.97438 * 26 25 24 50 50 H 1.08004 * 120.11420 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 2.4603 -0.1376 2.3231 6 7 2.8030 -1.0990 3.2345 7 6 3.4071 -0.8403 4.5439 8 6 4.9055 -0.9606 4.4383 9 8 5.4183 -1.2358 3.3742 10 7 5.6758 -0.7624 5.5263 11 6 7.1354 -0.7659 5.4011 12 6 7.6374 0.2059 4.3643 13 6 8.7391 -0.1141 3.5931 14 6 9.1972 0.7758 2.6395 15 6 8.5586 1.9889 2.4628 16 6 7.4601 2.3111 3.2378 17 6 6.9996 1.4197 4.1887 18 6 7.7399 -2.1758 5.2704 19 6 7.8197 -2.1991 6.8060 20 1 8.7340 -2.6517 7.1900 21 8 6.6418 -2.7105 7.4327 22 6 7.8697 -0.6632 6.7483 23 6 2.5004 -2.3461 2.7355 24 6 2.6428 -3.6370 3.2330 25 6 2.2347 -4.7120 2.4738 26 6 1.6812 -4.5204 1.2155 27 6 1.5236 -3.2601 0.7110 28 6 1.9349 -2.1571 1.4610 29 1 -0.3933 0.4417 -0.7651 30 1 1.7923 -0.5138 -0.8899 31 1 1.5880 2.4585 -1.2242 32 1 1.5615 2.4679 1.2085 33 1 2.5962 0.9248 2.4621 34 1 3.0342 -1.5668 5.2659 35 1 3.1455 0.1655 4.8724 36 1 5.2637 -0.6175 6.3924 37 1 9.2403 -1.0603 3.7337 38 1 10.0556 0.5241 2.0344 39 1 8.9181 2.6852 1.7196 40 1 6.9615 3.2591 3.1000 41 1 6.1412 1.6713 4.7938 42 1 8.7143 -2.1880 4.7822 43 1 7.0504 -2.9123 4.8578 44 1 6.6046 -3.6760 7.4719 45 1 7.2839 -0.1778 7.5289 46 1 8.8798 -0.2620 6.6656 47 1 3.0728 -3.7965 4.2109 48 1 2.3465 -5.7137 2.8617 49 1 1.3667 -5.3739 0.6331 50 1 1.0925 -3.1188 -0.2692 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:52:42 Heat of formation + Delta-G solvation = 31.211799 kcal Electronic energy + Delta-G solvation = -35665.250104 eV Core-core repulsion = 31205.408554 eV Total energy + Delta-G solvation = -4459.841550 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.58183 -41.92249 -39.76598 -39.20198 -38.09482 -37.69964 -36.16863 -34.37786 -33.81580 -31.82104 -31.65043 -31.35116 -30.29441 -29.00526 -27.00540 -26.14632 -25.26500 -23.79222 -23.39456 -22.90382 -22.38671 -21.56198 -20.55255 -20.27204 -18.73333 -18.48984 -18.34502 -18.10076 -17.80674 -17.68856 -16.88583 -16.45476 -16.31814 -16.09729 -15.84113 -15.66458 -15.57167 -15.28981 -15.05909 -14.87050 -14.78897 -14.71820 -14.42910 -14.25734 -14.14243 -13.76781 -13.60141 -13.54680 -13.47614 -13.17757 -12.88690 -12.74581 -12.56773 -12.49726 -12.41746 -12.10545 -11.98898 -11.86822 -11.73622 -11.48137 -11.09331 -10.79707 -10.54785 -10.36725 -10.05942 -9.79227 -9.53966 -9.16324 -8.63990 -4.90598 0.13233 0.44764 0.52809 0.64141 1.30264 1.41154 1.54111 1.56854 1.61871 1.90279 2.18708 2.85135 2.93968 3.09821 3.49705 3.51618 3.56240 3.60815 3.65385 3.73930 3.76377 3.82384 3.90070 3.99795 4.09715 4.10366 4.14225 4.21877 4.26087 4.26801 4.39061 4.39173 4.56160 4.62855 4.65822 4.69515 4.71921 4.77894 4.79151 4.88479 4.89701 4.97615 5.00243 5.10932 5.12951 5.18152 5.45771 5.50416 5.58806 5.65113 5.65691 5.72462 5.74814 5.75457 6.13210 6.16794 6.23680 6.52682 6.66284 6.82964 7.22332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.051 4.051 3 Si 0.755 3.245 4 C -0.179 4.179 5 C 0.073 3.927 6 N -0.463 5.463 7 C 0.087 3.913 8 C 0.496 3.504 9 O -0.546 6.546 10 N -0.686 5.686 11 C 0.195 3.805 12 C -0.073 4.073 13 C -0.125 4.125 14 C -0.130 4.130 15 C -0.133 4.133 16 C -0.127 4.127 17 C -0.119 4.119 18 C -0.175 4.175 19 C 0.088 3.912 20 H 0.088 0.912 21 O -0.560 6.560 22 C -0.118 4.118 23 C 0.093 3.907 24 C -0.133 4.133 25 C -0.106 4.106 26 C -0.153 4.153 27 C -0.087 4.087 28 C -0.117 4.117 29 H 0.390 0.610 30 H 0.073 0.927 31 H -0.280 1.280 32 H -0.278 1.278 33 H 0.189 0.811 34 H 0.138 0.862 35 H 0.153 0.847 36 H 0.417 0.583 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.396 0.604 45 H 0.092 0.908 46 H 0.118 0.882 47 H 0.131 0.869 48 H 0.147 0.853 49 H 0.139 0.861 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 1.092 5.333 6.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.159 4.159 3 Si 0.658 3.342 4 C -0.186 4.186 5 C -0.053 4.053 6 N -0.145 5.145 7 C -0.038 4.038 8 C 0.281 3.719 9 O -0.422 6.422 10 N -0.339 5.339 11 C 0.108 3.892 12 C -0.074 4.074 13 C -0.143 4.143 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.145 4.145 17 C -0.138 4.138 18 C -0.214 4.214 19 C 0.029 3.971 20 H 0.106 0.894 21 O -0.368 6.368 22 C -0.156 4.156 23 C -0.012 4.012 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.172 4.172 27 C -0.105 4.105 28 C -0.121 4.121 29 H 0.239 0.761 30 H 0.091 0.909 31 H -0.206 1.206 32 H -0.204 1.204 33 H 0.205 0.795 34 H 0.156 0.844 35 H 0.170 0.830 36 H 0.255 0.745 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.142 0.858 42 H 0.122 0.878 43 H 0.077 0.923 44 H 0.247 0.753 45 H 0.111 0.889 46 H 0.136 0.864 47 H 0.149 0.851 48 H 0.165 0.835 49 H 0.157 0.843 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.317 2.137 5.497 7.309 hybrid contribution -1.220 -0.793 -0.623 1.582 sum 3.097 1.344 4.874 5.929 Atomic orbital electron populations 1.86592 1.19076 1.80675 1.50527 1.24317 0.83426 1.11433 0.96756 0.94124 0.90635 0.71648 0.77805 1.19730 1.09970 0.91539 0.97398 1.21853 1.00015 0.94883 0.88565 1.43365 1.52057 1.03848 1.15259 1.21921 0.89642 1.08288 0.83959 1.21154 0.89855 0.76720 0.84155 1.90810 1.75142 1.46750 1.29496 1.45420 1.04630 1.72888 1.10958 1.19932 0.80488 0.93910 0.94853 1.19770 0.95802 0.94731 0.97128 1.21231 0.97150 0.99853 0.96103 1.21394 1.00587 0.94456 0.98314 1.21427 0.96353 0.97345 0.99959 1.21389 0.96997 1.00156 0.95967 1.21039 0.99967 0.93914 0.98842 1.24203 1.02041 0.96522 0.98613 1.22652 0.88781 0.95113 0.90594 0.89383 1.86347 1.41807 1.28008 1.80650 1.23406 1.02252 0.95417 0.94486 1.18400 1.01570 0.86933 0.94335 1.20225 1.04715 0.89019 1.01376 1.21132 0.98106 0.98931 0.94305 1.20926 1.02253 0.96963 0.97014 1.20447 0.99029 0.91573 0.99482 1.19338 1.04101 0.93654 0.95035 0.76081 0.90868 1.20630 1.20433 0.79457 0.84445 0.82963 0.74454 0.85198 0.84914 0.84763 0.84646 0.85845 0.87795 0.92332 0.75350 0.88922 0.86362 0.85129 0.83545 0.84311 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.21 12.86 -148.98 -1.92 -6.12 16 2 C -0.05 -0.29 3.05 71.24 0.22 -0.08 16 3 Si 0.76 1.06 30.79 68.60 2.11 3.18 16 4 C -0.18 -1.73 5.61 -18.63 -0.10 -1.84 16 5 C 0.07 0.44 9.89 83.00 0.82 1.26 16 6 N -0.46 -2.49 2.27 -519.99 -1.18 -3.67 16 7 C 0.09 -0.25 6.48 85.63 0.56 0.30 16 8 C 0.50 0.70 7.12 87.66 0.62 1.32 16 9 O -0.55 -6.12 15.43 -3.03 -0.05 -6.17 16 10 N -0.69 2.28 4.15 -423.67 -1.76 0.53 16 11 C 0.20 -0.28 0.89 3.44 0.00 -0.28 16 12 C -0.07 -0.18 3.95 -19.86 -0.08 -0.26 16 13 C -0.13 -0.41 9.28 22.27 0.21 -0.21 16 14 C -0.13 -0.40 10.05 22.27 0.22 -0.18 16 15 C -0.13 -0.34 10.05 22.27 0.22 -0.11 16 16 C -0.13 -0.27 10.05 22.27 0.22 -0.05 16 17 C -0.12 -0.27 8.94 22.27 0.20 -0.07 16 18 C -0.18 0.21 6.79 31.18 0.21 0.42 16 19 C 0.09 -0.48 5.28 31.12 0.16 -0.31 16 20 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 21 O -0.56 2.98 13.08 -148.98 -1.95 1.03 16 22 C -0.12 0.63 7.16 31.12 0.22 0.85 16 23 C 0.09 0.92 6.80 39.03 0.27 1.19 16 24 C -0.13 -0.94 9.99 22.37 0.22 -0.72 16 25 C -0.11 -0.63 10.01 22.30 0.22 -0.41 16 26 C -0.15 -1.13 9.97 22.04 0.22 -0.91 16 27 C -0.09 -0.93 10.05 22.23 0.22 -0.71 16 28 C -0.12 -1.46 6.35 -20.20 -0.13 -1.59 16 29 H 0.39 -0.45 8.74 -74.06 -0.65 -1.10 16 30 H 0.07 0.31 7.96 -2.39 -0.02 0.29 16 31 H -0.28 -1.31 7.11 99.48 0.71 -0.60 16 32 H -0.28 -1.44 7.04 99.48 0.70 -0.74 16 33 H 0.19 0.07 6.30 -2.91 -0.02 0.05 16 34 H 0.14 -0.99 8.14 -2.39 -0.02 -1.01 16 35 H 0.15 -1.49 8.12 -2.39 -0.02 -1.51 16 36 H 0.42 -3.37 8.61 -92.70 -0.80 -4.17 16 37 H 0.13 0.08 5.67 -2.91 -0.02 0.06 16 38 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 39 H 0.13 -0.15 8.06 -2.91 -0.02 -0.18 16 40 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 41 H 0.12 -0.10 7.74 -2.91 -0.02 -0.13 16 42 H 0.10 -0.22 5.66 -2.39 -0.01 -0.23 16 43 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.40 -4.36 9.12 -74.05 -0.68 -5.04 16 45 H 0.09 -0.59 8.10 -2.39 -0.02 -0.61 16 46 H 0.12 -0.78 8.09 -2.38 -0.02 -0.80 16 47 H 0.13 0.34 8.06 -2.91 -0.02 0.31 16 48 H 0.15 0.06 8.06 -2.91 -0.02 0.04 16 49 H 0.14 0.38 8.06 -2.91 -0.02 0.36 16 50 H 0.12 1.06 8.06 -2.91 -0.02 1.04 16 Total: 0.00 -27.33 415.43 -1.08 -28.41 By element: Atomic # 1 Polarization: -13.73 SS G_CDS: -1.08 Total: -14.82 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.74 Total: -2.37 kcal Atomic # 7 Polarization: -0.21 SS G_CDS: -2.94 Total: -3.14 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -3.91 Total: -11.26 kcal Atomic # 14 Polarization: 1.06 SS G_CDS: 2.11 Total: 3.18 kcal Total: -27.33 -1.08 -28.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.625 kcal (2) G-P(sol) polarization free energy of solvation -27.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds