Wall clock time and date at job start Sat Mar 6 2021 23:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36765 * 125.80489 * 2 1 4 4 C 1.47263 * 126.94000 * 359.97438 * 3 2 1 5 5 O 1.21631 * 120.00151 * 359.43720 * 4 3 2 6 6 N 1.34782 * 120.00133 * 179.71769 * 4 3 2 7 7 C 1.46503 * 120.00082 * 175.01535 * 6 4 3 8 8 C 1.50697 * 112.85035 * 291.23345 * 7 6 4 9 9 C 1.38240 * 119.99912 * 346.71181 * 8 7 6 10 10 C 1.38233 * 119.99963 * 179.80850 * 9 8 7 11 11 C 1.38238 * 119.99750 * 0.42006 * 10 9 8 12 12 C 1.38231 * 120.00317 * 359.81145 * 11 10 9 13 13 C 1.38229 * 120.00047 * 166.98239 * 8 7 6 14 14 C 1.53777 * 113.61336 * 159.92538 * 7 6 4 15 15 C 1.53782 * 87.08256 * 270.88795 * 14 7 6 16 16 H 1.09000 * 113.61204 * 220.02387 * 15 14 7 17 17 O 1.42898 * 113.69387 * 89.12708 * 15 14 7 18 18 C 1.53780 * 113.61342 * 62.42883 * 7 6 4 19 19 C 1.46684 * 106.11766 * 179.73690 * 3 2 1 20 20 C 1.34484 * 106.33254 * 0.25476 * 19 3 2 21 21 C 1.50700 * 125.57132 * 179.97438 * 20 19 3 22 22 O 1.42894 * 109.47442 * 300.00244 * 21 20 19 23 23 Si 1.86301 * 109.46975 * 180.02562 * 21 20 19 24 24 N 1.34658 * 125.79946 * 180.18461 * 2 1 3 25 25 H 1.08994 * 109.46780 * 90.00577 * 1 2 3 26 26 H 1.08994 * 109.47059 * 210.00523 * 1 2 3 27 27 H 1.08999 * 109.46668 * 330.00685 * 1 2 3 28 28 H 0.97002 * 119.99504 * 355.01247 * 6 4 3 29 29 H 1.08004 * 120.00111 * 0.02562 * 9 8 7 30 30 H 1.07992 * 120.00348 * 180.20726 * 10 9 8 31 31 H 1.08002 * 120.00180 * 179.78506 * 11 10 9 32 32 H 1.08000 * 120.00681 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.99931 * 359.97438 * 13 8 7 34 34 H 1.09001 * 113.61381 * 25.43176 * 14 7 6 35 35 H 1.08999 * 113.61662 * 156.33235 * 14 7 6 36 36 H 0.96702 * 113.99597 * 82.46645 * 17 15 14 37 37 H 1.08998 * 113.61489 * 203.66385 * 18 7 6 38 38 H 1.09007 * 113.61578 * 334.48862 * 18 7 6 39 39 H 1.08001 * 126.83519 * 180.25842 * 19 3 2 40 40 H 1.09001 * 109.47058 * 60.00581 * 21 20 19 41 41 H 0.96699 * 114.00106 * 179.97438 * 22 21 20 42 42 H 1.48509 * 109.99910 * 298.67905 * 23 21 20 43 43 H 1.48498 * 110.00336 * 60.00071 * 23 21 20 44 44 H 0.97000 * 124.85219 * 0.02834 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3072 1.1092 0.0000 4 6 1.8704 2.5155 -0.0005 5 8 0.6841 2.7839 -0.0114 6 7 2.7851 3.5054 0.0053 7 6 2.3546 4.9013 -0.1055 8 6 1.7923 5.2343 -1.4633 9 6 1.9741 4.3615 -2.5198 10 6 1.4549 4.6650 -3.7644 11 6 0.7614 5.8456 -3.9547 12 6 0.5837 6.7207 -2.8995 13 6 1.0996 6.4152 -1.6539 14 6 3.4020 5.9104 0.3940 15 6 2.7616 5.7675 1.7848 16 1 2.6840 6.7089 2.3286 17 8 3.3263 4.7169 2.5718 18 6 1.4659 5.3662 1.0602 19 6 3.6883 0.6150 0.0065 20 6 3.6096 -0.7275 0.0040 21 6 4.7820 -1.6744 0.0082 22 8 5.5814 -1.4478 -1.1543 23 14 4.1615 -3.4310 0.0018 24 7 2.2948 -1.0922 -0.0035 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3632 0.8901 0.5137 28 1 3.7285 3.2934 0.0829 29 1 2.5188 3.4406 -2.3718 30 1 1.5940 3.9816 -4.5889 31 1 0.3587 6.0845 -4.9280 32 1 0.0422 7.6432 -3.0483 33 1 0.9609 7.0990 -0.8295 34 1 4.4253 5.5383 0.3443 35 1 3.2909 6.9050 -0.0378 36 1 4.1415 4.9633 3.0300 37 1 0.8253 6.2120 0.8105 38 1 0.9250 4.5548 1.5475 39 1 4.5891 1.2108 0.0121 40 1 5.3832 -1.5043 0.9014 41 1 6.3558 -2.0234 -1.2174 42 1 3.3546 -3.6891 1.2216 43 1 3.3405 -3.6753 -1.2113 44 1 1.9734 -2.0074 -0.0069 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12891110_9865296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:52:45 Heat of formation + Delta-G solvation = -4.355499 kcal Electronic energy + Delta-G solvation = -28834.940278 eV Core-core repulsion = 24913.772454 eV Total energy + Delta-G solvation = -3921.167824 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.65975 -41.87654 -39.54604 -39.10715 -37.68062 -36.18442 -34.15868 -33.00131 -32.22370 -31.65881 -31.59436 -29.07468 -26.96266 -26.33030 -25.20929 -23.74143 -23.31310 -22.30060 -21.59615 -20.75795 -20.16281 -18.64622 -18.53183 -18.12619 -17.87887 -17.30168 -16.83265 -16.40377 -16.27313 -15.82094 -15.63309 -15.46388 -15.36443 -14.94076 -14.92718 -14.59411 -14.52951 -14.33382 -14.22345 -14.00795 -13.81951 -13.59044 -13.53283 -13.19929 -12.96297 -12.92523 -12.53024 -12.31711 -12.22032 -12.14524 -11.92452 -11.43249 -10.92034 -10.82738 -10.40056 -10.13998 -9.89845 -9.85174 -9.57884 -9.25971 -5.14006 0.39530 0.46490 0.58792 1.06562 1.19803 1.54026 1.78344 1.79836 2.27195 2.48414 2.78173 3.15807 3.39021 3.49254 3.63609 3.65400 3.73479 3.79060 3.83906 3.96422 4.05779 4.09608 4.13429 4.22778 4.37124 4.40679 4.43787 4.53102 4.59410 4.62473 4.65141 4.69289 4.83027 4.86543 4.88535 4.99451 5.03129 5.04856 5.11869 5.14290 5.46132 5.54419 5.57979 5.59214 5.71669 5.80048 6.07561 6.18128 6.62929 6.88525 6.92831 7.35573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.106 3.894 3 C -0.258 4.258 4 C 0.595 3.405 5 O -0.573 6.573 6 N -0.686 5.686 7 C 0.190 3.810 8 C -0.080 4.080 9 C -0.122 4.122 10 C -0.134 4.134 11 C -0.133 4.133 12 C -0.123 4.123 13 C -0.121 4.121 14 C -0.148 4.148 15 C 0.087 3.913 16 H 0.095 0.905 17 O -0.565 6.565 18 C -0.138 4.138 19 C -0.131 4.131 20 C 0.003 3.997 21 C -0.047 4.047 22 O -0.562 6.562 23 Si 0.776 3.224 24 N -0.550 5.550 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.409 0.591 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.397 0.603 37 H 0.115 0.885 38 H 0.054 0.946 39 H 0.162 0.838 40 H 0.109 0.891 41 H 0.407 0.593 42 H -0.281 1.281 43 H -0.295 1.295 44 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.081 -1.340 1.741 7.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.012 4.012 3 C -0.268 4.268 4 C 0.385 3.615 5 O -0.454 6.454 6 N -0.336 5.336 7 C 0.103 3.897 8 C -0.081 4.081 9 C -0.141 4.141 10 C -0.152 4.152 11 C -0.151 4.151 12 C -0.141 4.141 13 C -0.139 4.139 14 C -0.186 4.186 15 C 0.028 3.972 16 H 0.112 0.888 17 O -0.373 6.373 18 C -0.176 4.176 19 C -0.155 4.155 20 C -0.105 4.105 21 C -0.158 4.158 22 O -0.372 6.372 23 Si 0.681 3.319 24 N -0.150 5.150 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.246 0.754 29 H 0.124 0.876 30 H 0.143 0.857 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.247 0.753 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.179 0.821 40 H 0.126 0.874 41 H 0.259 0.741 42 H -0.208 1.208 43 H -0.222 1.222 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.630 -1.693 1.397 5.124 hybrid contribution 0.429 -0.044 0.085 0.440 sum 5.059 -1.737 1.482 5.551 Atomic orbital electron populations 1.20580 0.86092 1.04539 1.03837 1.20600 0.94375 0.85566 1.00684 1.20300 0.94105 0.91999 1.20356 1.17376 0.85100 0.84395 0.74638 1.90720 1.17839 1.84716 1.52121 1.45121 1.09971 1.04080 1.74408 1.19986 0.97168 0.81911 0.90642 1.20000 0.98481 0.95073 0.94537 1.21002 1.00521 0.99121 0.93412 1.21342 0.98629 0.97897 0.97285 1.21433 0.99128 0.94380 1.00155 1.21450 0.99596 1.00321 0.92751 1.21187 0.97860 0.96629 0.98222 1.24005 0.98590 0.99408 0.96583 1.22687 0.93264 0.90733 0.90496 0.88762 1.86513 1.45611 1.39422 1.65733 1.23557 0.96720 1.01922 0.95396 1.21963 0.95473 0.92863 1.05235 1.19817 0.83934 0.95150 1.11595 1.24144 0.92191 1.07029 0.92429 1.86450 1.42962 1.65537 1.42222 0.93583 0.85171 0.76661 0.76530 1.41800 1.05818 1.08350 1.59052 0.90060 0.89567 0.89580 0.75414 0.87633 0.85660 0.84505 0.83789 0.83918 0.88904 0.86195 0.75326 0.86730 0.92723 0.82051 0.87358 0.74097 1.20753 1.22179 0.74557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 9.87 71.24 0.70 0.09 16 2 C 0.11 0.97 7.17 41.78 0.30 1.27 16 3 C -0.26 -2.75 6.29 -19.04 -0.12 -2.87 16 4 C 0.59 7.50 6.29 86.62 0.55 8.04 16 5 O -0.57 -10.61 13.24 -4.13 -0.05 -10.66 16 6 N -0.69 -4.53 3.75 -427.29 -1.60 -6.13 16 7 C 0.19 0.92 0.94 3.38 0.00 0.93 16 8 C -0.08 -0.60 4.88 -19.87 -0.10 -0.70 16 9 C -0.12 -1.23 8.98 22.27 0.20 -1.03 16 10 C -0.13 -1.11 10.05 22.27 0.22 -0.88 16 11 C -0.13 -0.76 10.05 22.27 0.22 -0.53 16 12 C -0.12 -0.52 10.05 22.27 0.22 -0.30 16 13 C -0.12 -0.56 8.71 22.27 0.19 -0.37 16 14 C -0.15 0.32 7.13 31.12 0.22 0.54 16 15 C 0.09 -0.06 5.27 31.12 0.16 0.10 16 16 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 17 O -0.56 -0.67 13.09 -148.98 -1.95 -2.62 16 18 C -0.14 -0.75 6.56 31.12 0.20 -0.55 16 19 C -0.13 -0.86 10.44 23.62 0.25 -0.61 16 20 C 0.00 0.01 6.14 40.98 0.25 0.26 16 21 C -0.05 0.12 2.97 71.24 0.21 0.33 16 22 O -0.56 1.26 12.84 -148.98 -1.91 -0.66 16 23 Si 0.78 -3.80 30.94 68.60 2.12 -1.68 16 24 N -0.55 -3.07 5.41 -171.07 -0.93 -4.00 16 25 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 27 H 0.09 0.94 6.48 -2.39 -0.02 0.93 16 28 H 0.41 1.14 7.82 -92.71 -0.73 0.41 16 29 H 0.11 1.19 6.73 -2.91 -0.02 1.17 16 30 H 0.13 0.70 8.06 -2.91 -0.02 0.68 16 31 H 0.14 0.20 8.06 -2.91 -0.02 0.17 16 32 H 0.14 -0.12 8.06 -2.91 -0.02 -0.14 16 33 H 0.14 -0.07 6.55 -2.91 -0.02 -0.09 16 34 H 0.09 -0.39 8.10 -2.39 -0.02 -0.41 16 35 H 0.12 -0.59 7.79 -2.39 -0.02 -0.61 16 36 H 0.40 -3.13 9.12 -74.06 -0.68 -3.81 16 37 H 0.11 0.24 6.22 -2.39 -0.01 0.23 16 38 H 0.05 0.73 6.96 -2.38 -0.02 0.72 16 39 H 0.16 0.37 7.70 -2.91 -0.02 0.35 16 40 H 0.11 -0.77 7.96 -2.39 -0.02 -0.79 16 41 H 0.41 -5.36 8.74 -74.06 -0.65 -6.01 16 42 H -0.28 0.04 7.11 99.48 0.71 0.75 16 43 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 44 H 0.41 0.79 6.70 -92.71 -0.62 0.16 16 Total: 0.00 -26.08 360.75 -2.17 -28.25 By element: Atomic # 1 Polarization: -4.68 SS G_CDS: -1.55 Total: -6.23 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 3.70 Total: 3.73 kcal Atomic # 7 Polarization: -7.60 SS G_CDS: -2.53 Total: -10.13 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -3.92 Total: -13.94 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: 2.12 Total: -1.68 kcal Total: -26.08 -2.17 -28.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12891110_9865296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.899 kcal (2) G-P(sol) polarization free energy of solvation -26.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds